RNA–Protein interactions for RNA: ENST00000460431.1

SMARCD3-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 673 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-204ENST00000460431 STRCP1A6NGW2 1772 aa24.59■■□□□ 1.53
SMARCD3-204ENST00000460431 ILDR2Q71H61 639 aa24.58■■□□□ 1.53
SMARCD3-204ENST00000460431 ACIN1Q9UKV3 1341 aaKnown RBP24.58■■□□□ 1.52
SMARCD3-204ENST00000460431 SCAF1Q9H7N4 1312 aaKnown RBP24.57■■□□□ 1.52
SMARCD3-204ENST00000460431 HSPA1LP34931 641 aa24.56■■□□□ 1.52
SMARCD3-204ENST00000460431 ALKQ9UM73 1620 aa24.55■■□□□ 1.52
SMARCD3-204ENST00000460431 CHGAP10645 457 aaKnown RBP24.55■■□□□ 1.52
SMARCD3-204ENST00000460431 ZFYVE9O95405 1425 aa24.53■■□□□ 1.52
SMARCD3-204ENST00000460431 HDGFP51858 240 aaKnown RBP24.53■■□□□ 1.52
SMARCD3-204ENST00000460431 TRPM2O94759 1503 aa24.52■■□□□ 1.52
SMARCD3-204ENST00000460431 MPHOSPH9Q99550 1183 aa24.52■■□□□ 1.52
SMARCD3-204ENST00000460431 RIMS2Q9UQ26 1411 aa24.52■■□□□ 1.52
SMARCD3-204ENST00000460431 RAB3GAP2Q9H2M9 1393 aa24.5■■□□□ 1.51
SMARCD3-204ENST00000460431 CLTCL1P53675 1640 aa24.5■■□□□ 1.51
SMARCD3-204ENST00000460431 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.48■■□□□ 1.51
SMARCD3-204ENST00000460431 KIF1BO60333 1816 aa24.47■■□□□ 1.51
SMARCD3-204ENST00000460431 FOXD1Q16676 465 aa24.46■■□□□ 1.51
SMARCD3-204ENST00000460431 SLC26A8Q96RN1 970 aa24.46■■□□□ 1.51
SMARCD3-204ENST00000460431 HRCP23327 699 aa24.45■■□□□ 1.5
SMARCD3-204ENST00000460431 PLEKHG1Q9ULL1 1385 aa24.44■■□□□ 1.5
SMARCD3-204ENST00000460431 PPP1R15AO75807 674 aaPredicted RBP24.44■■□□□ 1.5
SMARCD3-204ENST00000460431 KCNA6P17658 529 aa24.44■■□□□ 1.5
SMARCD3-204ENST00000460431 NUTM2DQ5VT03 806 aaPredicted RBP24.41■■□□□ 1.5
SMARCD3-204ENST00000460431 BCANQ96GW7 911 aa24.41■■□□□ 1.5
SMARCD3-204ENST00000460431 ZNF326Q5BKZ1 582 aaKnown RBP24.4■■□□□ 1.5
SMARCD3-204ENST00000460431 TMEM94Q12767 1356 aa24.39■■□□□ 1.49
SMARCD3-204ENST00000460431 SOCS7O14512 581 aa24.37■■□□□ 1.49
SMARCD3-204ENST00000460431 SENP3Q9H4L4 574 aaPredicted RBP24.37■■□□□ 1.49
SMARCD3-204ENST00000460431 XIRP1Q702N8 1843 aaKnown RBP24.36■■□□□ 1.49
SMARCD3-204ENST00000460431 TBX22Q9Y458 520 aa24.36■■□□□ 1.49
SMARCD3-204ENST00000460431 PROSER2Q86WR7 435 aaPredicted RBP24.35■■□□□ 1.49
SMARCD3-204ENST00000460431 NEXMIFQ5QGS0 1516 aa24.34■■□□□ 1.49
SMARCD3-204ENST00000460431 CCDC144AA2RUR9 1427 aa24.34■■□□□ 1.49
SMARCD3-204ENST00000460431 ADAMTS13Q76LX8 1427 aa24.34■■□□□ 1.49
SMARCD3-204ENST00000460431 RBM33Q96EV2 1170 aaKnown RBP24.33■■□□□ 1.49
SMARCD3-204ENST00000460431 CHD2O14647 1828 aaKnown RBP24.33■■□□□ 1.48
SMARCD3-204ENST00000460431 RPGRIP1LQ68CZ1 1315 aa24.32■■□□□ 1.48
SMARCD3-204ENST00000460431 NWD1Q149M9 1564 aa24.31■■□□□ 1.48
SMARCD3-204ENST00000460431 NKTRP30414 1462 aaKnown RBP24.31■■□□□ 1.48
SMARCD3-204ENST00000460431 DIP2AQ14689 1571 aa24.3■■□□□ 1.48
SMARCD3-204ENST00000460431 MED1Q15648 1581 aaPredicted RBP24.3■■□□□ 1.48
SMARCD3-204ENST00000460431 FAM135BQ49AJ0 1406 aa24.28■■□□□ 1.48
SMARCD3-204ENST00000460431 SETBP1Q9Y6X0 1596 aa24.28■■□□□ 1.48
SMARCD3-204ENST00000460431 NRXN3Q9Y4C0 1643 aa24.28■■□□□ 1.48
SMARCD3-204ENST00000460431 PPLO60437 1756 aa24.27■■□□□ 1.48
SMARCD3-204ENST00000460431 VGFO15240 615 aaPredicted RBP24.27■■□□□ 1.48
SMARCD3-204ENST00000460431 PIK3R4Q99570 1358 aa24.27■■□□□ 1.48
SMARCD3-204ENST00000460431 SPATA31E1Q6ZUB1 1445 aa24.27■■□□□ 1.48
SMARCD3-204ENST00000460431 ANKRD30BQ9BXX2 1392 aa24.24■■□□□ 1.47
SMARCD3-204ENST00000460431 RGL3Q3MIN7 710 aa24.23■■□□□ 1.47
SMARCD3-204ENST00000460431 MSH6P52701 1360 aa24.2■■□□□ 1.46
SMARCD3-204ENST00000460431 PTPRUQ92729 1446 aa24.18■■□□□ 1.46
SMARCD3-204ENST00000460431 IFT172Q9UG01 1749 aa24.18■■□□□ 1.46
SMARCD3-204ENST00000460431 AMOTL2Q9Y2J4 779 aa24.18■■□□□ 1.46
SMARCD3-204ENST00000460431 METP08581 1390 aa24.17■■□□□ 1.46
SMARCD3-204ENST00000460431 SLAIN2Q9P270 581 aa24.17■■□□□ 1.46
SMARCD3-204ENST00000460431 NCOA3Q9Y6Q9 1424 aa24.16■■□□□ 1.46
SMARCD3-204ENST00000460431 PHF23Q9BUL5 403 aaPredicted RBP24.15■■□□□ 1.46
SMARCD3-204ENST00000460431 ADGRF5Q8IZF2 1346 aa24.14■■□□□ 1.46
SMARCD3-204ENST00000460431 SETD1AO15047 1707 aaKnown RBP24.14■■□□□ 1.45
SMARCD3-204ENST00000460431 TRIM26Q12899 539 aaPredicted RBP24.14■■□□□ 1.45
SMARCD3-204ENST00000460431 ROBO1Q9Y6N7 1651 aa24.14■■□□□ 1.45
SMARCD3-204ENST00000460431 XRN1Q8IZH2 1706 aaKnown RBP24.13■■□□□ 1.45
SMARCD3-204ENST00000460431 C19orf44Q9H6X5 657 aa24.1■■□□□ 1.45
SMARCD3-204ENST00000460431 C14orf37Q86TY3 774 aa24.09■■□□□ 1.45
SMARCD3-204ENST00000460431 RGS17Q9UGC6 210 aaPredicted RBP24.08■■□□□ 1.45
SMARCD3-204ENST00000460431 PIK3C2GO75747 1445 aa24.05■■□□□ 1.44
SMARCD3-204ENST00000460431 CADPS2Q86UW7 1296 aa24.05■■□□□ 1.44
SMARCD3-204ENST00000460431 MYOM2P54296 1465 aa24.04■■□□□ 1.44
SMARCD3-204ENST00000460431 NRXN1Q9ULB1 1477 aa24.03■■□□□ 1.44
SMARCD3-204ENST00000460431 ATF3P18847 181 aa24.03■■□□□ 1.44
SMARCD3-204ENST00000460431 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.02■■□□□ 1.44
SMARCD3-204ENST00000460431 PRAG1Q86YV5 1406 aa24.01■■□□□ 1.43
SMARCD3-204ENST00000460431 STAC3Q96MF2 364 aa24■■□□□ 1.43
SMARCD3-204ENST00000460431 C14orf93Q9H972 538 aaKnown RBP24■■□□□ 1.43
SMARCD3-204ENST00000460431 DCAF11Q8TEB1 546 aa23.99■■□□□ 1.43
SMARCD3-204ENST00000460431 PTCH1Q13635 1447 aa23.99■■□□□ 1.43
SMARCD3-204ENST00000460431 ROBO2Q9HCK4 1378 aa23.98■■□□□ 1.43
SMARCD3-204ENST00000460431 JCADQ9P266 1359 aa23.98■■□□□ 1.43
SMARCD3-204ENST00000460431 DHX57Q6P158 1386 aaKnown RBP23.97■■□□□ 1.43
SMARCD3-204ENST00000460431 PHLPP1O60346 1717 aa23.96■■□□□ 1.43
SMARCD3-204ENST00000460431 DCCP43146 1447 aa23.96■■□□□ 1.43
SMARCD3-204ENST00000460431 TMEM132EQ6IEE7 984 aa23.96■■□□□ 1.43
SMARCD3-204ENST00000460431 KDM2AQ9Y2K7 1162 aa23.96■■□□□ 1.43
SMARCD3-204ENST00000460431 ASXL1Q8IXJ9 1541 aa23.95■■□□□ 1.43
SMARCD3-204ENST00000460431 CFAP70Q5T0N1 1121 aa23.95■■□□□ 1.42
SMARCD3-204ENST00000460431 LAMC1P11047 1609 aa23.95■■□□□ 1.42
SMARCD3-204ENST00000460431 COL16A1Q07092 1604 aaPredicted RBP23.95■■□□□ 1.42
SMARCD3-204ENST00000460431 LRPPRCP42704 1394 aaKnown RBP23.94■■□□□ 1.42
SMARCD3-204ENST00000460431 BRINP3Q76B58 766 aa23.94■■□□□ 1.42
SMARCD3-204ENST00000460431 ABCC11Q96J66 1382 aa23.93■■□□□ 1.42
SMARCD3-204ENST00000460431 TECPR2O15040 1411 aa23.93■■□□□ 1.42
SMARCD3-204ENST00000460431 ADGRL3Q9HAR2 1447 aa23.93■■□□□ 1.42
SMARCD3-204ENST00000460431 POTEAQ6S8J7 498 aa23.92■■□□□ 1.42
SMARCD3-204ENST00000460431 STK26Q9P289 416 aa23.92■■□□□ 1.42
SMARCD3-204ENST00000460431 NALCNQ8IZF0 1738 aa23.92■■□□□ 1.42
SMARCD3-204ENST00000460431 YTHDC2Q9H6S0 1430 aaKnown RBP23.91■■□□□ 1.42
SMARCD3-204ENST00000460431 AHDC1Q5TGY3 1603 aaPredicted RBP23.91■■□□□ 1.42
SMARCD3-204ENST00000460431 KNDC1Q76NI1 1749 aa23.9■■□□□ 1.42
SMARCD3-204ENST00000460431 MST1RQ04912 1400 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms