RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 SLC26A8Q96RN1 970 aa34.38■■■■□ 3.09
PTPN4-208ENST00000460289 MYO5BQ9ULV0 1848 aa34.38■■■■□ 3.09
PTPN4-208ENST00000460289 SPHKAPQ2M3C7 1700 aa34.38■■■■□ 3.09
PTPN4-208ENST00000460289 PLEKHG1Q9ULL1 1385 aa34.36■■■■□ 3.09
PTPN4-208ENST00000460289 ACIN1Q9UKV3 1341 aaKnown RBP34.35■■■■□ 3.09
PTPN4-208ENST00000460289 TOM1O60784 492 aa34.35■■■■□ 3.09
PTPN4-208ENST00000460289 STRCP1A6NGW2 1772 aa34.32■■■■□ 3.08
PTPN4-208ENST00000460289 LRRC7Q96NW7 1537 aa34.32■■■■□ 3.08
PTPN4-208ENST00000460289 KCNA6P17658 529 aa34.32■■■■□ 3.08
PTPN4-208ENST00000460289 TRPM2O94759 1503 aa34.3■■■■□ 3.08
PTPN4-208ENST00000460289 NUTM2DQ5VT03 806 aaPredicted RBP34.29■■■■□ 3.08
PTPN4-208ENST00000460289 ZNF326Q5BKZ1 582 aaKnown RBP34.28■■■■□ 3.08
PTPN4-208ENST00000460289 SENP3Q9H4L4 574 aaPredicted RBP34.27■■■■□ 3.08
PTPN4-208ENST00000460289 TBX22Q9Y458 520 aa34.27■■■■□ 3.08
PTPN4-208ENST00000460289 SETD5Q9C0A6 1442 aa34.27■■■■□ 3.08
PTPN4-208ENST00000460289 MPHOSPH9Q99550 1183 aa34.23■■■■□ 3.07
PTPN4-208ENST00000460289 CLTCL1P53675 1640 aa34.22■■■■□ 3.07
PTPN4-208ENST00000460289 PIP4K2BP78356 416 aa34.2■■■■□ 3.07
PTPN4-208ENST00000460289 PROSER2Q86WR7 435 aaPredicted RBP34.19■■■■□ 3.06
PTPN4-208ENST00000460289 SCAF1Q9H7N4 1312 aaKnown RBP34.19■■■■□ 3.06
PTPN4-208ENST00000460289 FOXD1Q16676 465 aa34.17■■■■□ 3.06
PTPN4-208ENST00000460289 ADAMTS13Q76LX8 1427 aa34.15■■■■□ 3.06
PTPN4-208ENST00000460289 KIF1BO60333 1816 aa34.14■■■■□ 3.06
PTPN4-208ENST00000460289 TMEM94Q12767 1356 aa34.13■■■■□ 3.05
PTPN4-208ENST00000460289 NKTRP30414 1462 aaKnown RBP34.13■■■■□ 3.05
PTPN4-208ENST00000460289 PIK3R4Q99570 1358 aa34.12■■■■□ 3.05
PTPN4-208ENST00000460289 DIP2AQ14689 1571 aa34.12■■■■□ 3.05
PTPN4-208ENST00000460289 NWD1Q149M9 1564 aa34.12■■■■□ 3.05
PTPN4-208ENST00000460289 RAB3GAP2Q9H2M9 1393 aa34.11■■■■□ 3.05
PTPN4-208ENST00000460289 RPGRIP1LQ68CZ1 1315 aa34.09■■■■□ 3.05
PTPN4-208ENST00000460289 CHD2O14647 1828 aaKnown RBP34.07■■■■□ 3.04
PTPN4-208ENST00000460289 VGFO15240 615 aaPredicted RBP34.07■■■■□ 3.04
PTPN4-208ENST00000460289 CCDC144AA2RUR9 1427 aa34.06■■■■□ 3.04
PTPN4-208ENST00000460289 NEXMIFQ5QGS0 1516 aa34.06■■■■□ 3.04
PTPN4-208ENST00000460289 ALKQ9UM73 1620 aa34.05■■■■□ 3.04
PTPN4-208ENST00000460289 RBM33Q96EV2 1170 aaKnown RBP34.05■■■■□ 3.04
PTPN4-208ENST00000460289 XIRP1Q702N8 1843 aaKnown RBP34.04■■■■□ 3.04
PTPN4-208ENST00000460289 SETBP1Q9Y6X0 1596 aa34.03■■■■□ 3.04
PTPN4-208ENST00000460289 HRCP23327 699 aa34.03■■■■□ 3.04
PTPN4-208ENST00000460289 HSPA1LP34931 641 aa34.01■■■■□ 3.03
PTPN4-208ENST00000460289 AMOTL2Q9Y2J4 779 aa34.01■■■■□ 3.03
PTPN4-208ENST00000460289 NCOA3Q9Y6Q9 1424 aa33.98■■■■□ 3.03
PTPN4-208ENST00000460289 MSH6P52701 1360 aa33.98■■■■□ 3.03
PTPN4-208ENST00000460289 NRXN3Q9Y4C0 1643 aa33.97■■■■□ 3.03
PTPN4-208ENST00000460289 RGL3Q3MIN7 710 aa33.93■■■■□ 3.02
PTPN4-208ENST00000460289 C14orf37Q86TY3 774 aa33.93■■■■□ 3.02
PTPN4-208ENST00000460289 METP08581 1390 aa33.93■■■■□ 3.02
PTPN4-208ENST00000460289 PTPRUQ92729 1446 aa33.93■■■■□ 3.02
PTPN4-208ENST00000460289 SPATA31E1Q6ZUB1 1445 aa33.9■■■■□ 3.02
PTPN4-208ENST00000460289 FAM135BQ49AJ0 1406 aa33.88■■■■□ 3.01
PTPN4-208ENST00000460289 C19orf44Q9H6X5 657 aa33.87■■■■□ 3.01
PTPN4-208ENST00000460289 ANKRD30BQ9BXX2 1392 aa33.85■■■■□ 3.01
PTPN4-208ENST00000460289 PPLO60437 1756 aa33.85■■■■□ 3.01
PTPN4-208ENST00000460289 SLAIN2Q9P270 581 aa33.85■■■■□ 3.01
PTPN4-208ENST00000460289 CADPS2Q86UW7 1296 aa33.82■■■■□ 3
PTPN4-208ENST00000460289 ATF3P18847 181 aa33.81■■■■□ 3
PTPN4-208ENST00000460289 XRN1Q8IZH2 1706 aaKnown RBP33.81■■■■□ 3
PTPN4-208ENST00000460289 DISP3Q9P2K9 1392 aa33.8■■■■□ 3
PTPN4-208ENST00000460289 ADGRF5Q8IZF2 1346 aa33.79■■■■□ 3
PTPN4-208ENST00000460289 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.72■■■□□ 2.99
PTPN4-208ENST00000460289 ROBO1Q9Y6N7 1651 aa33.71■■■□□ 2.99
PTPN4-208ENST00000460289 SETD1AO15047 1707 aaKnown RBP33.7■■■□□ 2.99
PTPN4-208ENST00000460289 IFT172Q9UG01 1749 aa33.7■■■□□ 2.98
PTPN4-208ENST00000460289 DCCP43146 1447 aa33.7■■■□□ 2.98
PTPN4-208ENST00000460289 PTCH1Q13635 1447 aa33.68■■■□□ 2.98
PTPN4-208ENST00000460289 PIK3C2GO75747 1445 aa33.66■■■□□ 2.98
PTPN4-208ENST00000460289 PRAG1Q86YV5 1406 aa33.65■■■□□ 2.98
PTPN4-208ENST00000460289 ADGRL3Q9HAR2 1447 aa33.64■■■□□ 2.98
PTPN4-208ENST00000460289 ROBO2Q9HCK4 1378 aa33.64■■■□□ 2.98
PTPN4-208ENST00000460289 C14orf93Q9H972 538 aaKnown RBP33.61■■■□□ 2.97
PTPN4-208ENST00000460289 MYOM2P54296 1465 aa33.61■■■□□ 2.97
PTPN4-208ENST00000460289 NRXN1Q9ULB1 1477 aa33.58■■■□□ 2.97
PTPN4-208ENST00000460289 TMEM132EQ6IEE7 984 aa33.58■■■□□ 2.97
PTPN4-208ENST00000460289 STAC3Q96MF2 364 aa33.58■■■□□ 2.97
PTPN4-208ENST00000460289 STK26Q9P289 416 aa33.58■■■□□ 2.97
PTPN4-208ENST00000460289 LRPPRCP42704 1394 aaKnown RBP33.57■■■□□ 2.96
PTPN4-208ENST00000460289 BRINP3Q76B58 766 aa33.55■■■□□ 2.96
PTPN4-208ENST00000460289 ABCC11Q96J66 1382 aa33.55■■■□□ 2.96
PTPN4-208ENST00000460289 MED1Q15648 1581 aaPredicted RBP33.55■■■□□ 2.96
PTPN4-208ENST00000460289 MST1RQ04912 1400 aa33.54■■■□□ 2.96
PTPN4-208ENST00000460289 CFAP70Q5T0N1 1121 aa33.54■■■□□ 2.96
PTPN4-208ENST00000460289 DCAF11Q8TEB1 546 aa33.54■■■□□ 2.96
PTPN4-208ENST00000460289 TECPR2O15040 1411 aa33.53■■■□□ 2.96
PTPN4-208ENST00000460289 NALCNQ8IZF0 1738 aa33.51■■■□□ 2.96
PTPN4-208ENST00000460289 KDM2AQ9Y2K7 1162 aa33.51■■■□□ 2.95
PTPN4-208ENST00000460289 PHLPP1O60346 1717 aa33.5■■■□□ 2.95
PTPN4-208ENST00000460289 DHX57Q6P158 1386 aaKnown RBP33.5■■■□□ 2.95
PTPN4-208ENST00000460289 YTHDC2Q9H6S0 1430 aaKnown RBP33.5■■■□□ 2.95
PTPN4-208ENST00000460289 SIRT1Q96EB6 747 aa33.49■■■□□ 2.95
PTPN4-208ENST00000460289 ASXL1Q8IXJ9 1541 aa33.48■■■□□ 2.95
PTPN4-208ENST00000460289 WAPLQ7Z5K2 1190 aa33.47■■■□□ 2.95
PTPN4-208ENST00000460289 PHF23Q9BUL5 403 aaPredicted RBP33.47■■■□□ 2.95
PTPN4-208ENST00000460289 JCADQ9P266 1359 aa33.47■■■□□ 2.95
PTPN4-208ENST00000460289 LAMC1P11047 1609 aa33.46■■■□□ 2.95
PTPN4-208ENST00000460289 ILDR2Q71H61 639 aa33.45■■■□□ 2.95
PTPN4-208ENST00000460289 AHDC1Q5TGY3 1603 aaPredicted RBP33.45■■■□□ 2.95
PTPN4-208ENST00000460289 C1orf167Q5SNV9 1468 aa33.43■■■□□ 2.94
PTPN4-208ENST00000460289 COL16A1Q07092 1604 aaPredicted RBP33.41■■■□□ 2.94
PTPN4-208ENST00000460289 KNDC1Q76NI1 1749 aa33.41■■■□□ 2.94
PTPN4-208ENST00000460289 PLEKHH1Q9ULM0 1364 aa33.37■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms