RNA–Protein interactions for RNA: ENST00000455069.1

HDAC9-217, Transcript of histone deacetylase 9, humanhuman

TSL 4

Gene HDAC9, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-217ENST00000455069 KIF1BO60333 1816 aa16.95■□□□□ 0.3
HDAC9-217ENST00000455069 TXNDC2Q86VQ3 553 aa16.94■□□□□ 0.3
HDAC9-217ENST00000455069 PIAS4Q8N2W9 510 aaPredicted RBP16.93■□□□□ 0.3
HDAC9-217ENST00000455069 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
HDAC9-217ENST00000455069 RIMS2Q9UQ26 1411 aa16.92■□□□□ 0.3
HDAC9-217ENST00000455069 UBAP1LF5GYI3 381 aa16.91■□□□□ 0.3
HDAC9-217ENST00000455069 DISP3Q9P2K9 1392 aa16.9■□□□□ 0.3
HDAC9-217ENST00000455069 EID1Q9Y6B2 187 aa16.9■□□□□ 0.3
HDAC9-217ENST00000455069 CPS1P31327 1500 aa16.9■□□□□ 0.3
HDAC9-217ENST00000455069 CHGAP10645 457 aaKnown RBP16.89■□□□□ 0.29
HDAC9-217ENST00000455069 NEXMIFQ5QGS0 1516 aa16.88■□□□□ 0.29
HDAC9-217ENST00000455069 MPHOSPH9Q99550 1183 aa16.88■□□□□ 0.29
HDAC9-217ENST00000455069 NRXN3Q9Y4C0 1643 aa16.87■□□□□ 0.29
HDAC9-217ENST00000455069 PLEKHG1Q9ULL1 1385 aa16.87■□□□□ 0.29
HDAC9-217ENST00000455069 XIRP1Q702N8 1843 aaKnown RBP16.86■□□□□ 0.29
HDAC9-217ENST00000455069 PPLO60437 1756 aa16.85■□□□□ 0.29
HDAC9-217ENST00000455069 MSH5O43196 834 aa16.85■□□□□ 0.29
HDAC9-217ENST00000455069 NWD1Q149M9 1564 aa16.85■□□□□ 0.29
HDAC9-217ENST00000455069 NUTM2DQ5VT03 806 aaPredicted RBP16.84■□□□□ 0.29
HDAC9-217ENST00000455069 ILDR2Q71H61 639 aa16.84■□□□□ 0.29
HDAC9-217ENST00000455069 CHD2O14647 1828 aaKnown RBP16.84■□□□□ 0.29
HDAC9-217ENST00000455069 ADAMTS13Q76LX8 1427 aa16.83■□□□□ 0.28
HDAC9-217ENST00000455069 IFT172Q9UG01 1749 aa16.83■□□□□ 0.28
HDAC9-217ENST00000455069 DIP2AQ14689 1571 aa16.82■□□□□ 0.28
HDAC9-217ENST00000455069 SETBP1Q9Y6X0 1596 aa16.82■□□□□ 0.28
HDAC9-217ENST00000455069 LRRC7Q96NW7 1537 aa16.82■□□□□ 0.28
HDAC9-217ENST00000455069 ACIN1Q9UKV3 1341 aaKnown RBP16.81■□□□□ 0.28
HDAC9-217ENST00000455069 SLC26A8Q96RN1 970 aa16.81■□□□□ 0.28
HDAC9-217ENST00000455069 CCDC144AA2RUR9 1427 aa16.8■□□□□ 0.28
HDAC9-217ENST00000455069 SETD1AO15047 1707 aaKnown RBP16.8■□□□□ 0.28
HDAC9-217ENST00000455069 TOM1O60784 492 aa16.8■□□□□ 0.28
HDAC9-217ENST00000455069 PPP1R15AO75807 674 aaPredicted RBP16.8■□□□□ 0.28
HDAC9-217ENST00000455069 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.8■□□□□ 0.28
HDAC9-217ENST00000455069 ALKQ9UM73 1620 aa16.8■□□□□ 0.28
HDAC9-217ENST00000455069 SPATA31E1Q6ZUB1 1445 aa16.79■□□□□ 0.28
HDAC9-217ENST00000455069 HRCP23327 699 aa16.79■□□□□ 0.28
HDAC9-217ENST00000455069 HDGFP51858 240 aaKnown RBP16.77■□□□□ 0.28
HDAC9-217ENST00000455069 ZNF326Q5BKZ1 582 aaKnown RBP16.77■□□□□ 0.28
HDAC9-217ENST00000455069 NKTRP30414 1462 aaKnown RBP16.76■□□□□ 0.27
HDAC9-217ENST00000455069 HSPA1LP34931 641 aa16.76■□□□□ 0.27
HDAC9-217ENST00000455069 PIP4K2BP78356 416 aa16.76■□□□□ 0.27
HDAC9-217ENST00000455069 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
HDAC9-217ENST00000455069 XRN1Q8IZH2 1706 aaKnown RBP16.75■□□□□ 0.27
HDAC9-217ENST00000455069 BCANQ96GW7 911 aa16.74■□□□□ 0.27
HDAC9-217ENST00000455069 ANKRD30BQ9BXX2 1392 aa16.74■□□□□ 0.27
HDAC9-217ENST00000455069 PTPRUQ92729 1446 aa16.73■□□□□ 0.27
HDAC9-217ENST00000455069 SOCS7O14512 581 aa16.73■□□□□ 0.27
HDAC9-217ENST00000455069 KCNA6P17658 529 aa16.73■□□□□ 0.27
HDAC9-217ENST00000455069 TBX22Q9Y458 520 aa16.73■□□□□ 0.27
HDAC9-217ENST00000455069 METP08581 1390 aa16.7■□□□□ 0.26
HDAC9-217ENST00000455069 PIK3R4Q99570 1358 aa16.7■□□□□ 0.26
HDAC9-217ENST00000455069 RPGRIP1LQ68CZ1 1315 aa16.7■□□□□ 0.26
HDAC9-217ENST00000455069 TMEM94Q12767 1356 aa16.69■□□□□ 0.26
HDAC9-217ENST00000455069 RGL3Q3MIN7 710 aa16.68■□□□□ 0.26
HDAC9-217ENST00000455069 RBM33Q96EV2 1170 aaKnown RBP16.68■□□□□ 0.26
HDAC9-217ENST00000455069 ADGRF5Q8IZF2 1346 aa16.67■□□□□ 0.26
HDAC9-217ENST00000455069 VGFO15240 615 aaPredicted RBP16.66■□□□□ 0.26
HDAC9-217ENST00000455069 MED1Q15648 1581 aaPredicted RBP16.66■□□□□ 0.26
HDAC9-217ENST00000455069 ASXL1Q8IXJ9 1541 aa16.65■□□□□ 0.26
HDAC9-217ENST00000455069 PIK3C2GO75747 1445 aa16.65■□□□□ 0.26
HDAC9-217ENST00000455069 MYOM2P54296 1465 aa16.65■□□□□ 0.26
HDAC9-217ENST00000455069 NRXN1Q9ULB1 1477 aa16.65■□□□□ 0.26
HDAC9-217ENST00000455069 PROSER2Q86WR7 435 aaPredicted RBP16.64■□□□□ 0.25
HDAC9-217ENST00000455069 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.63■□□□□ 0.25
HDAC9-217ENST00000455069 TRIM26Q12899 539 aaPredicted RBP16.63■□□□□ 0.25
HDAC9-217ENST00000455069 AMOTL2Q9Y2J4 779 aa16.63■□□□□ 0.25
HDAC9-217ENST00000455069 NALCNQ8IZF0 1738 aa16.62■□□□□ 0.25
HDAC9-217ENST00000455069 PRAG1Q86YV5 1406 aa16.62■□□□□ 0.25
HDAC9-217ENST00000455069 LAMC1P11047 1609 aa16.61■□□□□ 0.25
HDAC9-217ENST00000455069 KNDC1Q76NI1 1749 aa16.6■□□□□ 0.25
HDAC9-217ENST00000455069 NCOA3Q9Y6Q9 1424 aa16.6■□□□□ 0.25
HDAC9-217ENST00000455069 DHX57Q6P158 1386 aaKnown RBP16.59■□□□□ 0.25
HDAC9-217ENST00000455069 PTCH1Q13635 1447 aa16.59■□□□□ 0.25
HDAC9-217ENST00000455069 ROBO1Q9Y6N7 1651 aa16.58■□□□□ 0.24
HDAC9-217ENST00000455069 MSH6P52701 1360 aa16.57■□□□□ 0.24
HDAC9-217ENST00000455069 ROBO2Q9HCK4 1378 aa16.56■□□□□ 0.24
HDAC9-217ENST00000455069 FAM135BQ49AJ0 1406 aa16.55■□□□□ 0.24
HDAC9-217ENST00000455069 ADGRB1O14514 1584 aa16.54■□□□□ 0.24
HDAC9-217ENST00000455069 TECPR2O15040 1411 aa16.53■□□□□ 0.24
HDAC9-217ENST00000455069 ADGRL3Q9HAR2 1447 aa16.53■□□□□ 0.24
HDAC9-217ENST00000455069 DCCP43146 1447 aa16.53■□□□□ 0.24
HDAC9-217ENST00000455069 C14orf93Q9H972 538 aaKnown RBP16.52■□□□□ 0.24
HDAC9-217ENST00000455069 LRPPRCP42704 1394 aaKnown RBP16.51■□□□□ 0.23
HDAC9-217ENST00000455069 CFAP70Q5T0N1 1121 aa16.51■□□□□ 0.23
HDAC9-217ENST00000455069 TMEM132EQ6IEE7 984 aa16.51■□□□□ 0.23
HDAC9-217ENST00000455069 DCAF11Q8TEB1 546 aa16.51■□□□□ 0.23
HDAC9-217ENST00000455069 YTHDC2Q9H6S0 1430 aaKnown RBP16.51■□□□□ 0.23
HDAC9-217ENST00000455069 C14orf37Q86TY3 774 aa16.5■□□□□ 0.23
HDAC9-217ENST00000455069 C19orf44Q9H6X5 657 aa16.5■□□□□ 0.23
HDAC9-217ENST00000455069 KDM2AQ9Y2K7 1162 aa16.49■□□□□ 0.23
HDAC9-217ENST00000455069 ABCC11Q96J66 1382 aa16.49■□□□□ 0.23
HDAC9-217ENST00000455069 KIAA1210Q9ULL0 1709 aa16.48■□□□□ 0.23
HDAC9-217ENST00000455069 MST1RQ04912 1400 aa16.48■□□□□ 0.23
HDAC9-217ENST00000455069 SIN3AQ96ST3 1273 aa16.48■□□□□ 0.23
HDAC9-217ENST00000455069 PLEKHH1Q9ULM0 1364 aa16.48■□□□□ 0.23
HDAC9-217ENST00000455069 CDC42BPGQ6DT37 1551 aa16.47■□□□□ 0.23
HDAC9-217ENST00000455069 SLAIN2Q9P270 581 aa16.47■□□□□ 0.23
HDAC9-217ENST00000455069 STK26Q9P289 416 aa16.47■□□□□ 0.23
HDAC9-217ENST00000455069 PHLPP1O60346 1717 aa16.47■□□□□ 0.23
HDAC9-217ENST00000455069 CADPS2Q86UW7 1296 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms