RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 SLC26A8Q96RN1 970 aa32.7■■■□□ 2.83
C9orf3-208ENST00000451893 RIMS2Q9UQ26 1411 aa32.66■■■□□ 2.82
C9orf3-208ENST00000451893 TMEM131LA2VDJ0 1609 aa32.66■■■□□ 2.82
C9orf3-208ENST00000451893 HSPA1LP34931 641 aa32.65■■■□□ 2.82
C9orf3-208ENST00000451893 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.63■■■□□ 2.81
C9orf3-208ENST00000451893 KCNA6P17658 529 aa32.61■■■□□ 2.81
C9orf3-208ENST00000451893 PLEKHG1Q9ULL1 1385 aa32.58■■■□□ 2.81
C9orf3-208ENST00000451893 SPHKAPQ2M3C7 1700 aa32.58■■■□□ 2.81
C9orf3-208ENST00000451893 PROSER2Q86WR7 435 aaPredicted RBP32.58■■■□□ 2.81
C9orf3-208ENST00000451893 ZFYVE9O95405 1425 aa32.58■■■□□ 2.81
C9orf3-208ENST00000451893 XIRP1Q702N8 1843 aaKnown RBP32.56■■■□□ 2.8
C9orf3-208ENST00000451893 NUTM2DQ5VT03 806 aaPredicted RBP32.56■■■□□ 2.8
C9orf3-208ENST00000451893 TRIM52Q96A61 297 aa32.55■■■□□ 2.8
C9orf3-208ENST00000451893 TMEM94Q12767 1356 aa32.54■■■□□ 2.8
C9orf3-208ENST00000451893 ALKQ9UM73 1620 aa32.52■■■□□ 2.8
C9orf3-208ENST00000451893 NAIPQ13075 1403 aa32.51■■■□□ 2.8
C9orf3-208ENST00000451893 NKTRP30414 1462 aaKnown RBP32.51■■■□□ 2.79
C9orf3-208ENST00000451893 ZNF326Q5BKZ1 582 aaKnown RBP32.51■■■□□ 2.79
C9orf3-208ENST00000451893 NWD1Q149M9 1564 aa32.49■■■□□ 2.79
C9orf3-208ENST00000451893 RBM33Q96EV2 1170 aaKnown RBP32.47■■■□□ 2.79
C9orf3-208ENST00000451893 CHD2O14647 1828 aaKnown RBP32.46■■■□□ 2.79
C9orf3-208ENST00000451893 MSH6P52701 1360 aa32.45■■■□□ 2.78
C9orf3-208ENST00000451893 HFM1A2PYH4 1435 aa32.44■■■□□ 2.78
C9orf3-208ENST00000451893 C14orf37Q86TY3 774 aa32.43■■■□□ 2.78
C9orf3-208ENST00000451893 TBX22Q9Y458 520 aa32.43■■■□□ 2.78
C9orf3-208ENST00000451893 DIP2AQ14689 1571 aa32.43■■■□□ 2.78
C9orf3-208ENST00000451893 ILDR2Q71H61 639 aa32.42■■■□□ 2.78
C9orf3-208ENST00000451893 MED1Q15648 1581 aaPredicted RBP32.4■■■□□ 2.78
C9orf3-208ENST00000451893 KIF1BO60333 1816 aa32.4■■■□□ 2.78
C9orf3-208ENST00000451893 PHF23Q9BUL5 403 aaPredicted RBP32.39■■■□□ 2.78
C9orf3-208ENST00000451893 TRPM2O94759 1503 aa32.37■■■□□ 2.77
C9orf3-208ENST00000451893 SLC4A1APQ9BWU0 796 aaKnown RBP32.37■■■□□ 2.77
C9orf3-208ENST00000451893 CLTCL1P53675 1640 aa32.36■■■□□ 2.77
C9orf3-208ENST00000451893 ADAMTS13Q76LX8 1427 aa32.34■■■□□ 2.77
C9orf3-208ENST00000451893 PIK3R4Q99570 1358 aa32.33■■■□□ 2.77
C9orf3-208ENST00000451893 ROBO1Q9Y6N7 1651 aa32.31■■■□□ 2.76
C9orf3-208ENST00000451893 FAM135BQ49AJ0 1406 aa32.31■■■□□ 2.76
C9orf3-208ENST00000451893 AMOTL2Q9Y2J4 779 aa32.26■■■□□ 2.75
C9orf3-208ENST00000451893 SOCS7O14512 581 aa32.25■■■□□ 2.75
C9orf3-208ENST00000451893 NCOA3Q9Y6Q9 1424 aa32.25■■■□□ 2.75
C9orf3-208ENST00000451893 SLAIN2Q9P270 581 aa32.24■■■□□ 2.75
C9orf3-208ENST00000451893 SETBP1Q9Y6X0 1596 aa32.24■■■□□ 2.75
C9orf3-208ENST00000451893 ATF3P18847 181 aa32.23■■■□□ 2.75
C9orf3-208ENST00000451893 NEXMIFQ5QGS0 1516 aa32.21■■■□□ 2.75
C9orf3-208ENST00000451893 NRXN3Q9Y4C0 1643 aa32.2■■■□□ 2.75
C9orf3-208ENST00000451893 CADPS2Q86UW7 1296 aa32.19■■■□□ 2.74
C9orf3-208ENST00000451893 C19orf44Q9H6X5 657 aa32.18■■■□□ 2.74
C9orf3-208ENST00000451893 VGFO15240 615 aaPredicted RBP32.17■■■□□ 2.74
C9orf3-208ENST00000451893 PHLPP1O60346 1717 aa32.17■■■□□ 2.74
C9orf3-208ENST00000451893 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.17■■■□□ 2.74
C9orf3-208ENST00000451893 PTPRUQ92729 1446 aa32.16■■■□□ 2.74
C9orf3-208ENST00000451893 FOXD1Q16676 465 aa32.15■■■□□ 2.74
C9orf3-208ENST00000451893 XRN1Q8IZH2 1706 aaKnown RBP32.12■■■□□ 2.73
C9orf3-208ENST00000451893 CCDC144AA2RUR9 1427 aa32.12■■■□□ 2.73
C9orf3-208ENST00000451893 RPGRIP1LQ68CZ1 1315 aa32.11■■■□□ 2.73
C9orf3-208ENST00000451893 METP08581 1390 aa32.1■■■□□ 2.73
C9orf3-208ENST00000451893 ACIN1Q9UKV3 1341 aaKnown RBP32.1■■■□□ 2.73
C9orf3-208ENST00000451893 MPHOSPH9Q99550 1183 aa32.09■■■□□ 2.73
C9orf3-208ENST00000451893 PPLO60437 1756 aa32.07■■■□□ 2.72
C9orf3-208ENST00000451893 SETD5Q9C0A6 1442 aa32.03■■■□□ 2.72
C9orf3-208ENST00000451893 DCCP43146 1447 aa32.02■■■□□ 2.72
C9orf3-208ENST00000451893 RGL3Q3MIN7 710 aa32.02■■■□□ 2.72
C9orf3-208ENST00000451893 JCADQ9P266 1359 aa32.01■■■□□ 2.71
C9orf3-208ENST00000451893 ADGRL3Q9HAR2 1447 aa31.96■■■□□ 2.71
C9orf3-208ENST00000451893 COL16A1Q07092 1604 aaPredicted RBP31.95■■■□□ 2.71
C9orf3-208ENST00000451893 SETD1AO15047 1707 aaKnown RBP31.94■■■□□ 2.7
C9orf3-208ENST00000451893 NALCNQ8IZF0 1738 aa31.94■■■□□ 2.7
C9orf3-208ENST00000451893 BRINP3Q76B58 766 aa31.93■■■□□ 2.7
C9orf3-208ENST00000451893 AHDC1Q5TGY3 1603 aaPredicted RBP31.93■■■□□ 2.7
C9orf3-208ENST00000451893 MEX3CQ5U5Q3 659 aaKnown RBP31.92■■■□□ 2.7
C9orf3-208ENST00000451893 PTCH1Q13635 1447 aa31.92■■■□□ 2.7
C9orf3-208ENST00000451893 ANKRD30BQ9BXX2 1392 aa31.9■■■□□ 2.7
C9orf3-208ENST00000451893 RAB3GAP2Q9H2M9 1393 aa31.9■■■□□ 2.7
C9orf3-208ENST00000451893 TRIM26Q12899 539 aaPredicted RBP31.89■■■□□ 2.7
C9orf3-208ENST00000451893 MST1RQ04912 1400 aa31.89■■■□□ 2.7
C9orf3-208ENST00000451893 ASXL1Q8IXJ9 1541 aa31.89■■■□□ 2.7
C9orf3-208ENST00000451893 ADGRF5Q8IZF2 1346 aa31.86■■■□□ 2.69
C9orf3-208ENST00000451893 IFT172Q9UG01 1749 aa31.86■■■□□ 2.69
C9orf3-208ENST00000451893 SPATA31E1Q6ZUB1 1445 aa31.85■■■□□ 2.69
C9orf3-208ENST00000451893 ROBO2Q9HCK4 1378 aa31.85■■■□□ 2.69
C9orf3-208ENST00000451893 SPATA31A6Q5VVP1 1343 aa31.85■■■□□ 2.69
C9orf3-208ENST00000451893 SHPRHQ149N8 1683 aa31.83■■■□□ 2.69
C9orf3-208ENST00000451893 STK26Q9P289 416 aa31.82■■■□□ 2.68
C9orf3-208ENST00000451893 RGS17Q9UGC6 210 aaPredicted RBP31.82■■■□□ 2.68
C9orf3-208ENST00000451893 NHSL1Q5SYE7 1610 aa31.79■■■□□ 2.68
C9orf3-208ENST00000451893 NUTM2BA6NNL0 878 aaPredicted RBP31.78■■■□□ 2.68
C9orf3-208ENST00000451893 NUTM2EB1AL46 878 aaPredicted RBP31.78■■■□□ 2.68
C9orf3-208ENST00000451893 NUTM2AQ8IVF1 878 aaPredicted RBP31.78■■■□□ 2.68
C9orf3-208ENST00000451893 LRRC59Q96AG4 307 aaKnown RBP31.76■■■□□ 2.67
C9orf3-208ENST00000451893 C1orf167Q5SNV9 1468 aa31.76■■■□□ 2.67
C9orf3-208ENST00000451893 PRAG1Q86YV5 1406 aa31.75■■■□□ 2.67
C9orf3-208ENST00000451893 PIK3C2GO75747 1445 aa31.73■■■□□ 2.67
C9orf3-208ENST00000451893 TMEM132EQ6IEE7 984 aa31.72■■■□□ 2.67
C9orf3-208ENST00000451893 POTEAQ6S8J7 498 aa31.72■■■□□ 2.67
C9orf3-208ENST00000451893 DDX17Q92841 729 aaKnown RBP31.72■■■□□ 2.67
C9orf3-208ENST00000451893 LRP6O75581 1613 aa31.71■■■□□ 2.67
C9orf3-208ENST00000451893 LRPPRCP42704 1394 aaKnown RBP31.7■■■□□ 2.67
C9orf3-208ENST00000451893 KNDC1Q76NI1 1749 aa31.69■■■□□ 2.66
C9orf3-208ENST00000451893 ZNF772Q68DY9 489 aaPredicted RBP31.68■■■□□ 2.66
C9orf3-208ENST00000451893 LAMC1P11047 1609 aa31.67■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms