RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, human

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
C9orf3-208	ENST00000451893	SLC26A8	Q96RN1	970 aa		32.7	■■■□□ 2.83
C9orf3-208	ENST00000451893	RIMS2	Q9UQ26	1411 aa		32.66	■■■□□ 2.82
C9orf3-208	ENST00000451893	TMEM131L	A2VDJ0	1609 aa		32.66	■■■□□ 2.82
C9orf3-208	ENST00000451893	HSPA1L	P34931	641 aa		32.65	■■■□□ 2.82
C9orf3-208	ENST00000451893	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.63	■■■□□ 2.81
C9orf3-208	ENST00000451893	KCNA6	P17658	529 aa		32.61	■■■□□ 2.81
C9orf3-208	ENST00000451893	PLEKHG1	Q9ULL1	1385 aa		32.58	■■■□□ 2.81
C9orf3-208	ENST00000451893	SPHKAP	Q2M3C7	1700 aa		32.58	■■■□□ 2.81
C9orf3-208	ENST00000451893	PROSER2	Q86WR7	435 aa	Predicted RBP	32.58	■■■□□ 2.81
C9orf3-208	ENST00000451893	ZFYVE9	O95405	1425 aa		32.58	■■■□□ 2.81
C9orf3-208	ENST00000451893	XIRP1	Q702N8	1843 aa	Known RBP	32.56	■■■□□ 2.8
C9orf3-208	ENST00000451893	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.56	■■■□□ 2.8
C9orf3-208	ENST00000451893	TRIM52	Q96A61	297 aa		32.55	■■■□□ 2.8
C9orf3-208	ENST00000451893	TMEM94	Q12767	1356 aa		32.54	■■■□□ 2.8
C9orf3-208	ENST00000451893	ALK	Q9UM73	1620 aa		32.52	■■■□□ 2.8
C9orf3-208	ENST00000451893	NAIP	Q13075	1403 aa		32.51	■■■□□ 2.8
C9orf3-208	ENST00000451893	NKTR	P30414	1462 aa	Known RBP	32.51	■■■□□ 2.79
C9orf3-208	ENST00000451893	ZNF326	Q5BKZ1	582 aa	Known RBP	32.51	■■■□□ 2.79
C9orf3-208	ENST00000451893	NWD1	Q149M9	1564 aa		32.49	■■■□□ 2.79
C9orf3-208	ENST00000451893	RBM33	Q96EV2	1170 aa	Known RBP	32.47	■■■□□ 2.79
C9orf3-208	ENST00000451893	CHD2	O14647	1828 aa	Known RBP	32.46	■■■□□ 2.79
C9orf3-208	ENST00000451893	MSH6	P52701	1360 aa		32.45	■■■□□ 2.78
C9orf3-208	ENST00000451893	HFM1	A2PYH4	1435 aa		32.44	■■■□□ 2.78
C9orf3-208	ENST00000451893	C14orf37	Q86TY3	774 aa		32.43	■■■□□ 2.78
C9orf3-208	ENST00000451893	TBX22	Q9Y458	520 aa		32.43	■■■□□ 2.78
C9orf3-208	ENST00000451893	DIP2A	Q14689	1571 aa		32.43	■■■□□ 2.78
C9orf3-208	ENST00000451893	ILDR2	Q71H61	639 aa		32.42	■■■□□ 2.78
C9orf3-208	ENST00000451893	MED1	Q15648	1581 aa	Predicted RBP	32.4	■■■□□ 2.78
C9orf3-208	ENST00000451893	KIF1B	O60333	1816 aa		32.4	■■■□□ 2.78
C9orf3-208	ENST00000451893	PHF23	Q9BUL5	403 aa	Predicted RBP	32.39	■■■□□ 2.78
C9orf3-208	ENST00000451893	TRPM2	O94759	1503 aa		32.37	■■■□□ 2.77
C9orf3-208	ENST00000451893	SLC4A1AP	Q9BWU0	796 aa	Known RBP	32.37	■■■□□ 2.77
C9orf3-208	ENST00000451893	CLTCL1	P53675	1640 aa		32.36	■■■□□ 2.77
C9orf3-208	ENST00000451893	ADAMTS13	Q76LX8	1427 aa		32.34	■■■□□ 2.77
C9orf3-208	ENST00000451893	PIK3R4	Q99570	1358 aa		32.33	■■■□□ 2.77
C9orf3-208	ENST00000451893	ROBO1	Q9Y6N7	1651 aa		32.31	■■■□□ 2.76
C9orf3-208	ENST00000451893	FAM135B	Q49AJ0	1406 aa		32.31	■■■□□ 2.76
C9orf3-208	ENST00000451893	AMOTL2	Q9Y2J4	779 aa		32.26	■■■□□ 2.75
C9orf3-208	ENST00000451893	SOCS7	O14512	581 aa		32.25	■■■□□ 2.75
C9orf3-208	ENST00000451893	NCOA3	Q9Y6Q9	1424 aa		32.25	■■■□□ 2.75
C9orf3-208	ENST00000451893	SLAIN2	Q9P270	581 aa		32.24	■■■□□ 2.75
C9orf3-208	ENST00000451893	SETBP1	Q9Y6X0	1596 aa		32.24	■■■□□ 2.75
C9orf3-208	ENST00000451893	ATF3	P18847	181 aa		32.23	■■■□□ 2.75
C9orf3-208	ENST00000451893	NEXMIF	Q5QGS0	1516 aa		32.21	■■■□□ 2.75
C9orf3-208	ENST00000451893	NRXN3	Q9Y4C0	1643 aa		32.2	■■■□□ 2.75
C9orf3-208	ENST00000451893	CADPS2	Q86UW7	1296 aa		32.19	■■■□□ 2.74
C9orf3-208	ENST00000451893	C19orf44	Q9H6X5	657 aa		32.18	■■■□□ 2.74
C9orf3-208	ENST00000451893	VGF	O15240	615 aa	Predicted RBP	32.17	■■■□□ 2.74
C9orf3-208	ENST00000451893	PHLPP1	O60346	1717 aa		32.17	■■■□□ 2.74
C9orf3-208	ENST00000451893	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	32.17	■■■□□ 2.74
C9orf3-208	ENST00000451893	PTPRU	Q92729	1446 aa		32.16	■■■□□ 2.74
C9orf3-208	ENST00000451893	FOXD1	Q16676	465 aa		32.15	■■■□□ 2.74
C9orf3-208	ENST00000451893	XRN1	Q8IZH2	1706 aa	Known RBP	32.12	■■■□□ 2.73
C9orf3-208	ENST00000451893	CCDC144A	A2RUR9	1427 aa		32.12	■■■□□ 2.73
C9orf3-208	ENST00000451893	RPGRIP1L	Q68CZ1	1315 aa		32.11	■■■□□ 2.73
C9orf3-208	ENST00000451893	MET	P08581	1390 aa		32.1	■■■□□ 2.73
C9orf3-208	ENST00000451893	ACIN1	Q9UKV3	1341 aa	Known RBP	32.1	■■■□□ 2.73
C9orf3-208	ENST00000451893	MPHOSPH9	Q99550	1183 aa		32.09	■■■□□ 2.73
C9orf3-208	ENST00000451893	PPL	O60437	1756 aa		32.07	■■■□□ 2.72
C9orf3-208	ENST00000451893	SETD5	Q9C0A6	1442 aa		32.03	■■■□□ 2.72
C9orf3-208	ENST00000451893	DCC	P43146	1447 aa		32.02	■■■□□ 2.72
C9orf3-208	ENST00000451893	RGL3	Q3MIN7	710 aa		32.02	■■■□□ 2.72
C9orf3-208	ENST00000451893	JCAD	Q9P266	1359 aa		32.01	■■■□□ 2.71
C9orf3-208	ENST00000451893	ADGRL3	Q9HAR2	1447 aa		31.96	■■■□□ 2.71
C9orf3-208	ENST00000451893	COL16A1	Q07092	1604 aa	Predicted RBP	31.95	■■■□□ 2.71
C9orf3-208	ENST00000451893	SETD1A	O15047	1707 aa	Known RBP	31.94	■■■□□ 2.7
C9orf3-208	ENST00000451893	NALCN	Q8IZF0	1738 aa		31.94	■■■□□ 2.7
C9orf3-208	ENST00000451893	BRINP3	Q76B58	766 aa		31.93	■■■□□ 2.7
C9orf3-208	ENST00000451893	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.93	■■■□□ 2.7
C9orf3-208	ENST00000451893	MEX3C	Q5U5Q3	659 aa	Known RBP	31.92	■■■□□ 2.7
C9orf3-208	ENST00000451893	PTCH1	Q13635	1447 aa		31.92	■■■□□ 2.7
C9orf3-208	ENST00000451893	ANKRD30B	Q9BXX2	1392 aa		31.9	■■■□□ 2.7
C9orf3-208	ENST00000451893	RAB3GAP2	Q9H2M9	1393 aa		31.9	■■■□□ 2.7
C9orf3-208	ENST00000451893	TRIM26	Q12899	539 aa	Predicted RBP	31.89	■■■□□ 2.7
C9orf3-208	ENST00000451893	MST1R	Q04912	1400 aa		31.89	■■■□□ 2.7
C9orf3-208	ENST00000451893	ASXL1	Q8IXJ9	1541 aa		31.89	■■■□□ 2.7
C9orf3-208	ENST00000451893	ADGRF5	Q8IZF2	1346 aa		31.86	■■■□□ 2.69
C9orf3-208	ENST00000451893	IFT172	Q9UG01	1749 aa		31.86	■■■□□ 2.69
C9orf3-208	ENST00000451893	SPATA31E1	Q6ZUB1	1445 aa		31.85	■■■□□ 2.69
C9orf3-208	ENST00000451893	ROBO2	Q9HCK4	1378 aa		31.85	■■■□□ 2.69
C9orf3-208	ENST00000451893	SPATA31A6	Q5VVP1	1343 aa		31.85	■■■□□ 2.69
C9orf3-208	ENST00000451893	SHPRH	Q149N8	1683 aa		31.83	■■■□□ 2.69
C9orf3-208	ENST00000451893	STK26	Q9P289	416 aa		31.82	■■■□□ 2.68
C9orf3-208	ENST00000451893	RGS17	Q9UGC6	210 aa	Predicted RBP	31.82	■■■□□ 2.68
C9orf3-208	ENST00000451893	NHSL1	Q5SYE7	1610 aa		31.79	■■■□□ 2.68
C9orf3-208	ENST00000451893	NUTM2B	A6NNL0	878 aa	Predicted RBP	31.78	■■■□□ 2.68
C9orf3-208	ENST00000451893	NUTM2E	B1AL46	878 aa	Predicted RBP	31.78	■■■□□ 2.68
C9orf3-208	ENST00000451893	NUTM2A	Q8IVF1	878 aa	Predicted RBP	31.78	■■■□□ 2.68
C9orf3-208	ENST00000451893	LRRC59	Q96AG4	307 aa	Known RBP	31.76	■■■□□ 2.67
C9orf3-208	ENST00000451893	C1orf167	Q5SNV9	1468 aa		31.76	■■■□□ 2.67
C9orf3-208	ENST00000451893	PRAG1	Q86YV5	1406 aa		31.75	■■■□□ 2.67
C9orf3-208	ENST00000451893	PIK3C2G	O75747	1445 aa		31.73	■■■□□ 2.67
C9orf3-208	ENST00000451893	TMEM132E	Q6IEE7	984 aa		31.72	■■■□□ 2.67
C9orf3-208	ENST00000451893	POTEA	Q6S8J7	498 aa		31.72	■■■□□ 2.67
C9orf3-208	ENST00000451893	DDX17	Q92841	729 aa	Known RBP	31.72	■■■□□ 2.67
C9orf3-208	ENST00000451893	LRP6	O75581	1613 aa		31.71	■■■□□ 2.67
C9orf3-208	ENST00000451893	LRPPRC	P42704	1394 aa	Known RBP	31.7	■■■□□ 2.67
C9orf3-208	ENST00000451893	KNDC1	Q76NI1	1749 aa		31.69	■■■□□ 2.66
C9orf3-208	ENST00000451893	ZNF772	Q68DY9	489 aa	Predicted RBP	31.68	■■■□□ 2.66
C9orf3-208	ENST00000451893	LAMC1	P11047	1609 aa		31.67	■■■□□ 2.66

Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms