RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 AQRO60306 1485 aaKnown RBP eCLIP16.24■□□□□ 0.19
USP40-208ENST00000450966 PLEKHH2Q8IVE3 1493 aa16.24■□□□□ 0.19
USP40-208ENST00000450966 SAFB2Q14151 953 aaKnown RBP eCLIP16.24■□□□□ 0.19
USP40-208ENST00000450966 PRDM10Q9NQV6 1147 aa16.24■□□□□ 0.19
USP40-208ENST00000450966 LAMC3Q9Y6N6 1575 aa16.23■□□□□ 0.19
USP40-208ENST00000450966 LMOD3Q0VAK6 560 aa16.23■□□□□ 0.19
USP40-208ENST00000450966 HSP90AB3PQ58FF7 597 aa16.22■□□□□ 0.19
USP40-208ENST00000450966 STK11IPQ8N1F8 1099 aa16.22■□□□□ 0.19
USP40-208ENST00000450966 CCAR2Q8N163 923 aaKnown RBP16.22■□□□□ 0.19
USP40-208ENST00000450966 MNS1Q8NEH6 495 aa16.22■□□□□ 0.19
USP40-208ENST00000450966 GRPEL1Q9HAV7 217 aa16.22■□□□□ 0.19
USP40-208ENST00000450966 GOLGA6L19H0YKK7 550 aa16.22■□□□□ 0.19
USP40-208ENST00000450966 ZSCAN30Q86W11 494 aa16.21■□□□□ 0.19
USP40-208ENST00000450966 GIMAP7Q8NHV1 300 aa16.21■□□□□ 0.18
USP40-208ENST00000450966 PAXIP1Q6ZW49 1069 aaPredicted RBP16.2■□□□□ 0.18
USP40-208ENST00000450966 ATP6V1DQ9Y5K8 247 aa16.2■□□□□ 0.18
USP40-208ENST00000450966 PRG4Q92954 1404 aaPredicted RBP16.2■□□□□ 0.18
USP40-208ENST00000450966 RALBP1Q15311 655 aa16.2■□□□□ 0.18
USP40-208ENST00000450966 FOXD4L1Q9NU39 408 aa16.2■□□□□ 0.18
USP40-208ENST00000450966 RRP1P56182 461 aaKnown RBP16.2■□□□□ 0.18
USP40-208ENST00000450966 IFT57Q9NWB7 429 aa16.2■□□□□ 0.18
USP40-208ENST00000450966 IPO8O15397 1037 aaKnown RBP16.19■□□□□ 0.18
USP40-208ENST00000450966 KANK4Q5T7N3 995 aaPredicted RBP16.19■□□□□ 0.18
USP40-208ENST00000450966 GTPBP4Q9BZE4 634 aaKnown RBP16.18■□□□□ 0.18
USP40-208ENST00000450966 RRP12Q5JTH9 1297 aaKnown RBP16.18■□□□□ 0.18
USP40-208ENST00000450966 ERCC4Q92889 916 aaPredicted RBP16.18■□□□□ 0.18
USP40-208ENST00000450966 NEFHP12036 1026 aa16.18■□□□□ 0.18
USP40-208ENST00000450966 TIGD1Q96MW7 591 aa16.18■□□□□ 0.18
USP40-208ENST00000450966 NUCB2P80303 420 aa16.17■□□□□ 0.18
USP40-208ENST00000450966 SASS6Q6UVJ0 657 aa16.17■□□□□ 0.18
USP40-208ENST00000450966 C11orf95C9JLR9 678 aaPredicted RBP16.17■□□□□ 0.18
USP40-208ENST00000450966 AXDND1Q5T1B0 1012 aaPredicted RBP16.17■□□□□ 0.18
USP40-208ENST00000450966 CAVIN1Q6NZI2 390 aaKnown RBP16.17■□□□□ 0.18
USP40-208ENST00000450966 EXOC6Q8TAG9 804 aa16.16■□□□□ 0.18
USP40-208ENST00000450966 AMPHP49418 695 aa16.16■□□□□ 0.18
USP40-208ENST00000450966 CBX1P83916 185 aa16.16■□□□□ 0.18
USP40-208ENST00000450966 FOXD1Q16676 465 aa16.16■□□□□ 0.18
USP40-208ENST00000450966 HOMER1Q86YM7 354 aa16.16■□□□□ 0.18
USP40-208ENST00000450966 MEX3CQ5U5Q3 659 aaKnown RBP16.15■□□□□ 0.18
USP40-208ENST00000450966 EVC2Q86UK5 1308 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 DNMBPQ6XZF7 1577 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 BCL11BQ9C0K0 894 aaPredicted RBP16.15■□□□□ 0.18
USP40-208ENST00000450966 SMAP1Q8IYB5 467 aaPredicted RBP16.15■□□□□ 0.18
USP40-208ENST00000450966 CLCN1P35523 988 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 BECN2A8MW95 431 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 CLSTN1O94985 981 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 CDR1P51861 262 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 GPATCH11Q8N954 259 aa16.15■□□□□ 0.18
USP40-208ENST00000450966 TOPBP1Q92547 1522 aa16.14■□□□□ 0.17
USP40-208ENST00000450966 RAB3GAP2Q9H2M9 1393 aa16.14■□□□□ 0.17
USP40-208ENST00000450966 DYNC1I1O14576 645 aa16.14■□□□□ 0.17
USP40-208ENST00000450966 GTF2A1P52655 376 aaPredicted RBP16.14■□□□□ 0.17
USP40-208ENST00000450966 DCTN1Q14203 1278 aa16.14■□□□□ 0.17
USP40-208ENST00000450966 HMMRO75330 724 aa16.14■□□□□ 0.17
USP40-208ENST00000450966 ERICH4A6NGS2 130 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 SSR1P43307 286 aaKnown RBP16.13■□□□□ 0.17
USP40-208ENST00000450966 HSPA5P11021 654 aaKnown RBP16.13■□□□□ 0.17
USP40-208ENST00000450966 CLGNO14967 610 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 HMGB1P09429 215 aaKnown RBP16.13■□□□□ 0.17
USP40-208ENST00000450966 ATF3P18847 181 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 EFCAB5A4FU69 1503 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 CCDC34Q96HJ3 373 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 E9PSI1 815 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 HOMEZQ8IX15 550 aa16.13■□□□□ 0.17
USP40-208ENST00000450966 HMGB2P26583 209 aaKnown RBP16.12■□□□□ 0.17
USP40-208ENST00000450966 EVA1CP58658 441 aa16.12■□□□□ 0.17
USP40-208ENST00000450966 RUFY1Q96T51 708 aa16.11■□□□□ 0.17
USP40-208ENST00000450966 STK31Q9BXU1 1019 aa16.11■□□□□ 0.17
USP40-208ENST00000450966 PHLDB1Q86UU1 1377 aa16.11■□□□□ 0.17
USP40-208ENST00000450966 ERICH3Q5RHP9 1530 aa16.1■□□□□ 0.17
USP40-208ENST00000450966 TPD52L1Q16890 204 aaPredicted RBP16.1■□□□□ 0.17
USP40-208ENST00000450966 CTR9Q6PD62 1173 aa16.1■□□□□ 0.17
USP40-208ENST00000450966 RNF20Q5VTR2 975 aa16.1■□□□□ 0.17
USP40-208ENST00000450966 ARHGAP5Q13017 1502 aa16.09■□□□□ 0.17
USP40-208ENST00000450966 KIAA0754O94854 1291 aa16.09■□□□□ 0.17
USP40-208ENST00000450966 CCDC112Q8NEF3 446 aa16.09■□□□□ 0.17
USP40-208ENST00000450966 FYCO1Q9BQS8 1478 aa16.09■□□□□ 0.17
USP40-208ENST00000450966 PRDM2Q13029 1718 aa16.09■□□□□ 0.17
USP40-208ENST00000450966 U2AF1L5P0DN76 240 aaPredicted RBP16.09■□□□□ 0.17
USP40-208ENST00000450966 U2AF1Q01081 240 aaKnown RBP eCLIP16.09■□□□□ 0.17
USP40-208ENST00000450966 ZNF330Q9Y3S2 320 aaPredicted RBP16.09■□□□□ 0.17
USP40-208ENST00000450966 CASKIN1Q8WXD9 1431 aa16.09■□□□□ 0.17
USP40-208ENST00000450966 NBPF1Q3BBV0 1214 aa16.08■□□□□ 0.17
USP40-208ENST00000450966 PLCD3Q8N3E9 789 aa16.08■□□□□ 0.17
USP40-208ENST00000450966 SNAPC4Q5SXM2 1469 aa16.08■□□□□ 0.16
USP40-208ENST00000450966 BRD2P25440 801 aaKnown RBP16.08■□□□□ 0.16
USP40-208ENST00000450966 MBD3O95983 291 aa16.07■□□□□ 0.16
USP40-208ENST00000450966 COG3Q96JB2 828 aa16.07■□□□□ 0.16
USP40-208ENST00000450966 DHX57Q6P158 1386 aaKnown RBP16.07■□□□□ 0.16
USP40-208ENST00000450966 THEMISQ8N1K5 641 aaPredicted RBP16.07■□□□□ 0.16
USP40-208ENST00000450966 BACH2Q9BYV9 841 aa16.06■□□□□ 0.16
USP40-208ENST00000450966 KIF20AO95235 890 aa16.06■□□□□ 0.16
USP40-208ENST00000450966 DYDC1Q8WWB3 177 aa16.06■□□□□ 0.16
USP40-208ENST00000450966 KIF21BO75037 1637 aa16.06■□□□□ 0.16
USP40-208ENST00000450966 DCAF8L1A6NGE4 600 aa16.05■□□□□ 0.16
USP40-208ENST00000450966 MCTP1Q6DN14 999 aa16.05■□□□□ 0.16
USP40-208ENST00000450966 FAM107BQ9H098 131 aa16.05■□□□□ 0.16
USP40-208ENST00000450966 CCP110O43303 1012 aa16.05■□□□□ 0.16
USP40-208ENST00000450966 PES1O00541 588 aaKnown RBP16.05■□□□□ 0.16
USP40-208ENST00000450966 NESP48681 1621 aa16.05■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms