RNA–Protein interactions for RNA: ENST00000450303.6

PRPF40A-204, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-204ENST00000450303 RIMS2Q9UQ26 1411 aa25.63■■□□□ 1.69
PRPF40A-204ENST00000450303 PPP1R15AO75807 674 aaPredicted RBP25.61■■□□□ 1.69
PRPF40A-204ENST00000450303 NUTM2DQ5VT03 806 aaPredicted RBP25.61■■□□□ 1.69
PRPF40A-204ENST00000450303 TRIM52Q96A61 297 aa25.6■■□□□ 1.69
PRPF40A-204ENST00000450303 ZFYVE9O95405 1425 aa25.6■■□□□ 1.69
PRPF40A-204ENST00000450303 HDGFP51858 240 aaKnown RBP25.58■■□□□ 1.69
PRPF40A-204ENST00000450303 SPHKAPQ2M3C7 1700 aa25.57■■□□□ 1.68
PRPF40A-204ENST00000450303 HFM1A2PYH4 1435 aa25.57■■□□□ 1.68
PRPF40A-204ENST00000450303 XIRP1Q702N8 1843 aaKnown RBP25.56■■□□□ 1.68
PRPF40A-204ENST00000450303 ALKQ9UM73 1620 aa25.55■■□□□ 1.68
PRPF40A-204ENST00000450303 KCNA6P17658 529 aa25.55■■□□□ 1.68
PRPF40A-204ENST00000450303 PLEKHG1Q9ULL1 1385 aa25.54■■□□□ 1.68
PRPF40A-204ENST00000450303 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.53■■□□□ 1.68
PRPF40A-204ENST00000450303 RBM33Q96EV2 1170 aaKnown RBP25.53■■□□□ 1.68
PRPF40A-204ENST00000450303 HSPA1LP34931 641 aa25.52■■□□□ 1.68
PRPF40A-204ENST00000450303 PROSER2Q86WR7 435 aaPredicted RBP25.51■■□□□ 1.67
PRPF40A-204ENST00000450303 TMEM94Q12767 1356 aa25.48■■□□□ 1.67
PRPF40A-204ENST00000450303 DISP3Q9P2K9 1392 aa25.48■■□□□ 1.67
PRPF40A-204ENST00000450303 ZNF326Q5BKZ1 582 aaKnown RBP25.48■■□□□ 1.67
PRPF40A-204ENST00000450303 SLC4A1APQ9BWU0 796 aaKnown RBP25.47■■□□□ 1.67
PRPF40A-204ENST00000450303 CLTCL1P53675 1640 aa25.47■■□□□ 1.67
PRPF40A-204ENST00000450303 CHD2O14647 1828 aaKnown RBP25.45■■□□□ 1.66
PRPF40A-204ENST00000450303 TBX22Q9Y458 520 aa25.45■■□□□ 1.66
PRPF40A-204ENST00000450303 TRIM26Q12899 539 aaPredicted RBP25.44■■□□□ 1.66
PRPF40A-204ENST00000450303 ADAMTS13Q76LX8 1427 aa25.44■■□□□ 1.66
PRPF40A-204ENST00000450303 NWD1Q149M9 1564 aa25.44■■□□□ 1.66
PRPF40A-204ENST00000450303 TRPM2O94759 1503 aa25.43■■□□□ 1.66
PRPF40A-204ENST00000450303 FOXD1Q16676 465 aa25.41■■□□□ 1.66
PRPF40A-204ENST00000450303 KIF1BO60333 1816 aa25.41■■□□□ 1.66
PRPF40A-204ENST00000450303 NKTRP30414 1462 aaKnown RBP25.4■■□□□ 1.66
PRPF40A-204ENST00000450303 DIP2AQ14689 1571 aa25.35■■□□□ 1.65
PRPF40A-204ENST00000450303 NRXN3Q9Y4C0 1643 aa25.34■■□□□ 1.65
PRPF40A-204ENST00000450303 NEXMIFQ5QGS0 1516 aa25.33■■□□□ 1.65
PRPF40A-204ENST00000450303 MPHOSPH9Q99550 1183 aa25.32■■□□□ 1.64
PRPF40A-204ENST00000450303 AMOTL2Q9Y2J4 779 aa25.32■■□□□ 1.64
PRPF40A-204ENST00000450303 MSH6P52701 1360 aa25.31■■□□□ 1.64
PRPF40A-204ENST00000450303 PTPRUQ92729 1446 aa25.31■■□□□ 1.64
PRPF40A-204ENST00000450303 ILDR2Q71H61 639 aa25.31■■□□□ 1.64
PRPF40A-204ENST00000450303 PIK3R4Q99570 1358 aa25.31■■□□□ 1.64
PRPF40A-204ENST00000450303 C14orf37Q86TY3 774 aa25.3■■□□□ 1.64
PRPF40A-204ENST00000450303 SETBP1Q9Y6X0 1596 aa25.3■■□□□ 1.64
PRPF40A-204ENST00000450303 SETD5Q9C0A6 1442 aa25.29■■□□□ 1.64
PRPF40A-204ENST00000450303 FAM135BQ49AJ0 1406 aa25.27■■□□□ 1.64
PRPF40A-204ENST00000450303 METP08581 1390 aa25.26■■□□□ 1.63
PRPF40A-204ENST00000450303 SLAIN2Q9P270 581 aa25.25■■□□□ 1.63
PRPF40A-204ENST00000450303 ROBO1Q9Y6N7 1651 aa25.25■■□□□ 1.63
PRPF40A-204ENST00000450303 MED1Q15648 1581 aaPredicted RBP25.23■■□□□ 1.63
PRPF40A-204ENST00000450303 VGFO15240 615 aaPredicted RBP25.23■■□□□ 1.63
PRPF40A-204ENST00000450303 NCOA3Q9Y6Q9 1424 aa25.21■■□□□ 1.63
PRPF40A-204ENST00000450303 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.21■■□□□ 1.63
PRPF40A-204ENST00000450303 RPGRIP1LQ68CZ1 1315 aa25.21■■□□□ 1.63
PRPF40A-204ENST00000450303 RGL3Q3MIN7 710 aa25.21■■□□□ 1.63
PRPF40A-204ENST00000450303 PPLO60437 1756 aa25.21■■□□□ 1.63
PRPF40A-204ENST00000450303 CCDC144AA2RUR9 1427 aa25.2■■□□□ 1.63
PRPF40A-204ENST00000450303 XRN1Q8IZH2 1706 aaKnown RBP25.2■■□□□ 1.63
PRPF40A-204ENST00000450303 RAB3GAP2Q9H2M9 1393 aa25.2■■□□□ 1.63
PRPF40A-204ENST00000450303 C19orf44Q9H6X5 657 aa25.19■■□□□ 1.62
PRPF40A-204ENST00000450303 ATF3P18847 181 aa25.17■■□□□ 1.62
PRPF40A-204ENST00000450303 PCGF6Q9BYE7 350 aa25.16■■□□□ 1.62
PRPF40A-204ENST00000450303 CADPS2Q86UW7 1296 aa25.15■■□□□ 1.62
PRPF40A-204ENST00000450303 ACIN1Q9UKV3 1341 aaKnown RBP25.14■■□□□ 1.62
PRPF40A-204ENST00000450303 SETD1AO15047 1707 aaKnown RBP25.14■■□□□ 1.61
PRPF40A-204ENST00000450303 ADGRF5Q8IZF2 1346 aa25.12■■□□□ 1.61
PRPF40A-204ENST00000450303 SPATA31E1Q6ZUB1 1445 aa25.12■■□□□ 1.61
PRPF40A-204ENST00000450303 PHLPP1O60346 1717 aa25.12■■□□□ 1.61
PRPF40A-204ENST00000450303 PHF23Q9BUL5 403 aaPredicted RBP25.1■■□□□ 1.61
PRPF40A-204ENST00000450303 IFT172Q9UG01 1749 aa25.08■■□□□ 1.61
PRPF40A-204ENST00000450303 NALCNQ8IZF0 1738 aa25.05■■□□□ 1.6
PRPF40A-204ENST00000450303 ROBO2Q9HCK4 1378 aa25.05■■□□□ 1.6
PRPF40A-204ENST00000450303 ANKRD30BQ9BXX2 1392 aa25.04■■□□□ 1.6
PRPF40A-204ENST00000450303 ADGRL3Q9HAR2 1447 aa25.03■■□□□ 1.6
PRPF40A-204ENST00000450303 BRINP3Q76B58 766 aa25.03■■□□□ 1.6
PRPF40A-204ENST00000450303 DCCP43146 1447 aa25.03■■□□□ 1.6
PRPF40A-204ENST00000450303 SOCS7O14512 581 aa25.02■■□□□ 1.6
PRPF40A-204ENST00000450303 STK26Q9P289 416 aa25.01■■□□□ 1.59
PRPF40A-204ENST00000450303 MST1RQ04912 1400 aa25.01■■□□□ 1.59
PRPF40A-204ENST00000450303 COL16A1Q07092 1604 aaPredicted RBP25.01■■□□□ 1.59
PRPF40A-204ENST00000450303 TMEM132EQ6IEE7 984 aa25■■□□□ 1.59
PRPF40A-204ENST00000450303 PTCH1Q13635 1447 aa25■■□□□ 1.59
PRPF40A-204ENST00000450303 JCADQ9P266 1359 aa24.97■■□□□ 1.59
PRPF40A-204ENST00000450303 HRCP23327 699 aa24.97■■□□□ 1.59
PRPF40A-204ENST00000450303 AHDC1Q5TGY3 1603 aaPredicted RBP24.97■■□□□ 1.59
PRPF40A-204ENST00000450303 RGS17Q9UGC6 210 aaPredicted RBP24.96■■□□□ 1.59
PRPF40A-204ENST00000450303 PIK3C2GO75747 1445 aa24.95■■□□□ 1.59
PRPF40A-204ENST00000450303 ASXL1Q8IXJ9 1541 aa24.95■■□□□ 1.58
PRPF40A-204ENST00000450303 DDX17Q92841 729 aaKnown RBP24.94■■□□□ 1.58
PRPF40A-204ENST00000450303 PRAG1Q86YV5 1406 aa24.94■■□□□ 1.58
PRPF40A-204ENST00000450303 WAPLQ7Z5K2 1190 aa24.93■■□□□ 1.58
PRPF40A-204ENST00000450303 CFAP70Q5T0N1 1121 aa24.91■■□□□ 1.58
PRPF40A-204ENST00000450303 LRPPRCP42704 1394 aaKnown RBP24.91■■□□□ 1.58
PRPF40A-204ENST00000450303 C1orf167Q5SNV9 1468 aa24.9■■□□□ 1.58
PRPF40A-204ENST00000450303 C14orf93Q9H972 538 aaKnown RBP24.9■■□□□ 1.58
PRPF40A-204ENST00000450303 ORAI2Q96SN7 254 aa24.89■■□□□ 1.58
PRPF40A-204ENST00000450303 KDM2AQ9Y2K7 1162 aa24.89■■□□□ 1.58
PRPF40A-204ENST00000450303 NHSL1Q5SYE7 1610 aa24.89■■□□□ 1.57
PRPF40A-204ENST00000450303 MYOM2P54296 1465 aa24.88■■□□□ 1.57
PRPF40A-204ENST00000450303 ABCC11Q96J66 1382 aa24.87■■□□□ 1.57
PRPF40A-204ENST00000450303 PLEKHH1Q9ULM0 1364 aa24.87■■□□□ 1.57
PRPF40A-204ENST00000450303 NRXN1Q9ULB1 1477 aa24.87■■□□□ 1.57
PRPF40A-204ENST00000450303 YTHDC2Q9H6S0 1430 aaKnown RBP24.86■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms