RNA–Protein interactions for RNA: ENST00000448530.5

VCP-203, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 950 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-203ENST00000448530 RIMS2Q9UQ26 1411 aa29.76■■■□□ 2.35
VCP-203ENST00000448530 ZFYVE9O95405 1425 aa29.74■■■□□ 2.35
VCP-203ENST00000448530 NAIPQ13075 1403 aa29.74■■■□□ 2.35
VCP-203ENST00000448530 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.73■■■□□ 2.35
VCP-203ENST00000448530 DISP3Q9P2K9 1392 aa29.73■■■□□ 2.35
VCP-203ENST00000448530 PLEKHG1Q9ULL1 1385 aa29.7■■■□□ 2.35
VCP-203ENST00000448530 KCNA6P17658 529 aa29.7■■■□□ 2.35
VCP-203ENST00000448530 SENP3Q9H4L4 574 aaPredicted RBP29.7■■■□□ 2.35
VCP-203ENST00000448530 SPHKAPQ2M3C7 1700 aa29.7■■■□□ 2.34
VCP-203ENST00000448530 HSPA1LP34931 641 aa29.67■■■□□ 2.34
VCP-203ENST00000448530 HFM1A2PYH4 1435 aa29.67■■■□□ 2.34
VCP-203ENST00000448530 ALKQ9UM73 1620 aa29.66■■■□□ 2.34
VCP-203ENST00000448530 XIRP1Q702N8 1843 aaKnown RBP29.66■■■□□ 2.34
VCP-203ENST00000448530 PROSER2Q86WR7 435 aaPredicted RBP29.65■■■□□ 2.34
VCP-203ENST00000448530 TRIM52Q96A61 297 aa29.65■■■□□ 2.34
VCP-203ENST00000448530 NUTM2DQ5VT03 806 aaPredicted RBP29.63■■■□□ 2.33
VCP-203ENST00000448530 TMEM94Q12767 1356 aa29.62■■■□□ 2.33
VCP-203ENST00000448530 NKTRP30414 1462 aaKnown RBP29.61■■■□□ 2.33
VCP-203ENST00000448530 NWD1Q149M9 1564 aa29.6■■■□□ 2.33
VCP-203ENST00000448530 TBX22Q9Y458 520 aa29.59■■■□□ 2.33
VCP-203ENST00000448530 ZNF326Q5BKZ1 582 aaKnown RBP29.58■■■□□ 2.33
VCP-203ENST00000448530 CHD2O14647 1828 aaKnown RBP29.57■■■□□ 2.32
VCP-203ENST00000448530 DIP2AQ14689 1571 aa29.55■■■□□ 2.32
VCP-203ENST00000448530 TRPM2O94759 1503 aa29.55■■■□□ 2.32
VCP-203ENST00000448530 RBM33Q96EV2 1170 aaKnown RBP29.54■■■□□ 2.32
VCP-203ENST00000448530 SLC4A1APQ9BWU0 796 aaKnown RBP29.53■■■□□ 2.32
VCP-203ENST00000448530 CLTCL1P53675 1640 aa29.53■■■□□ 2.32
VCP-203ENST00000448530 ADAMTS13Q76LX8 1427 aa29.52■■■□□ 2.32
VCP-203ENST00000448530 KIF1BO60333 1816 aa29.51■■■□□ 2.31
VCP-203ENST00000448530 MSH6P52701 1360 aa29.5■■■□□ 2.31
VCP-203ENST00000448530 PIK3R4Q99570 1358 aa29.49■■■□□ 2.31
VCP-203ENST00000448530 C14orf37Q86TY3 774 aa29.44■■■□□ 2.3
VCP-203ENST00000448530 FAM135BQ49AJ0 1406 aa29.43■■■□□ 2.3
VCP-203ENST00000448530 SETBP1Q9Y6X0 1596 aa29.42■■■□□ 2.3
VCP-203ENST00000448530 MED1Q15648 1581 aaPredicted RBP29.41■■■□□ 2.3
VCP-203ENST00000448530 ILDR2Q71H61 639 aa29.41■■■□□ 2.3
VCP-203ENST00000448530 NCOA3Q9Y6Q9 1424 aa29.4■■■□□ 2.3
VCP-203ENST00000448530 NEXMIFQ5QGS0 1516 aa29.4■■■□□ 2.3
VCP-203ENST00000448530 AMOTL2Q9Y2J4 779 aa29.39■■■□□ 2.3
VCP-203ENST00000448530 NRXN3Q9Y4C0 1643 aa29.38■■■□□ 2.29
VCP-203ENST00000448530 ROBO1Q9Y6N7 1651 aa29.37■■■□□ 2.29
VCP-203ENST00000448530 SLAIN2Q9P270 581 aa29.36■■■□□ 2.29
VCP-203ENST00000448530 ACIN1Q9UKV3 1341 aaKnown RBP29.35■■■□□ 2.29
VCP-203ENST00000448530 PTPRUQ92729 1446 aa29.34■■■□□ 2.29
VCP-203ENST00000448530 VGFO15240 615 aaPredicted RBP29.33■■■□□ 2.29
VCP-203ENST00000448530 FOXD1Q16676 465 aa29.33■■■□□ 2.29
VCP-203ENST00000448530 MPHOSPH9Q99550 1183 aa29.32■■■□□ 2.28
VCP-203ENST00000448530 RPGRIP1LQ68CZ1 1315 aa29.31■■■□□ 2.28
VCP-203ENST00000448530 ATF3P18847 181 aa29.31■■■□□ 2.28
VCP-203ENST00000448530 PHF23Q9BUL5 403 aaPredicted RBP29.31■■■□□ 2.28
VCP-203ENST00000448530 C19orf44Q9H6X5 657 aa29.31■■■□□ 2.28
VCP-203ENST00000448530 CADPS2Q86UW7 1296 aa29.3■■■□□ 2.28
VCP-203ENST00000448530 METP08581 1390 aa29.29■■■□□ 2.28
VCP-203ENST00000448530 XRN1Q8IZH2 1706 aaKnown RBP29.29■■■□□ 2.28
VCP-203ENST00000448530 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.29■■■□□ 2.28
VCP-203ENST00000448530 CCDC144AA2RUR9 1427 aa29.28■■■□□ 2.28
VCP-203ENST00000448530 SETD5Q9C0A6 1442 aa29.28■■■□□ 2.28
VCP-203ENST00000448530 PPLO60437 1756 aa29.25■■■□□ 2.27
VCP-203ENST00000448530 SOCS7O14512 581 aa29.23■■■□□ 2.27
VCP-203ENST00000448530 PHLPP1O60346 1717 aa29.23■■■□□ 2.27
VCP-203ENST00000448530 DCCP43146 1447 aa29.19■■■□□ 2.26
VCP-203ENST00000448530 RGL3Q3MIN7 710 aa29.18■■■□□ 2.26
VCP-203ENST00000448530 RAB3GAP2Q9H2M9 1393 aa29.16■■■□□ 2.26
VCP-203ENST00000448530 SETD1AO15047 1707 aaKnown RBP29.16■■■□□ 2.26
VCP-203ENST00000448530 SPATA31E1Q6ZUB1 1445 aa29.13■■■□□ 2.25
VCP-203ENST00000448530 ANKRD30BQ9BXX2 1392 aa29.13■■■□□ 2.25
VCP-203ENST00000448530 ADGRL3Q9HAR2 1447 aa29.12■■■□□ 2.25
VCP-203ENST00000448530 JCADQ9P266 1359 aa29.11■■■□□ 2.25
VCP-203ENST00000448530 PTCH1Q13635 1447 aa29.1■■■□□ 2.25
VCP-203ENST00000448530 COL16A1Q07092 1604 aaPredicted RBP29.09■■■□□ 2.25
VCP-203ENST00000448530 NALCNQ8IZF0 1738 aa29.09■■■□□ 2.25
VCP-203ENST00000448530 IFT172Q9UG01 1749 aa29.09■■■□□ 2.25
VCP-203ENST00000448530 ADGRF5Q8IZF2 1346 aa29.09■■■□□ 2.25
VCP-203ENST00000448530 BRINP3Q76B58 766 aa29.08■■■□□ 2.25
VCP-203ENST00000448530 AHDC1Q5TGY3 1603 aaPredicted RBP29.08■■■□□ 2.25
VCP-203ENST00000448530 MST1RQ04912 1400 aa29.06■■■□□ 2.24
VCP-203ENST00000448530 ROBO2Q9HCK4 1378 aa29.05■■■□□ 2.24
VCP-203ENST00000448530 PRAG1Q86YV5 1406 aa29.03■■■□□ 2.24
VCP-203ENST00000448530 ASXL1Q8IXJ9 1541 aa29.03■■■□□ 2.24
VCP-203ENST00000448530 STK26Q9P289 416 aa28.98■■■□□ 2.23
VCP-203ENST00000448530 SPATA31A6Q5VVP1 1343 aa28.97■■■□□ 2.23
VCP-203ENST00000448530 PIK3C2GO75747 1445 aa28.97■■■□□ 2.23
VCP-203ENST00000448530 HRCP23327 699 aa28.97■■■□□ 2.23
VCP-203ENST00000448530 RGS17Q9UGC6 210 aaPredicted RBP28.96■■■□□ 2.23
VCP-203ENST00000448530 SHPRHQ149N8 1683 aa28.96■■■□□ 2.23
VCP-203ENST00000448530 NHSL1Q5SYE7 1610 aa28.95■■■□□ 2.23
VCP-203ENST00000448530 C1orf167Q5SNV9 1468 aa28.94■■■□□ 2.22
VCP-203ENST00000448530 LRPPRCP42704 1394 aaKnown RBP28.93■■■□□ 2.22
VCP-203ENST00000448530 TMEM132EQ6IEE7 984 aa28.93■■■□□ 2.22
VCP-203ENST00000448530 MEX3CQ5U5Q3 659 aaKnown RBP28.92■■■□□ 2.22
VCP-203ENST00000448530 MYOM2P54296 1465 aa28.91■■■□□ 2.22
VCP-203ENST00000448530 TECPR2O15040 1411 aa28.9■■■□□ 2.22
VCP-203ENST00000448530 LRRC59Q96AG4 307 aaKnown RBP28.9■■■□□ 2.22
VCP-203ENST00000448530 ABCC11Q96J66 1382 aa28.89■■■□□ 2.22
VCP-203ENST00000448530 KNDC1Q76NI1 1749 aa28.89■■■□□ 2.22
VCP-203ENST00000448530 LAMC1P11047 1609 aa28.89■■■□□ 2.22
VCP-203ENST00000448530 C14orf93Q9H972 538 aaKnown RBP28.88■■■□□ 2.21
VCP-203ENST00000448530 YTHDC2Q9H6S0 1430 aaKnown RBP28.87■■■□□ 2.21
VCP-203ENST00000448530 WAPLQ7Z5K2 1190 aa28.87■■■□□ 2.21
VCP-203ENST00000448530 DDX17Q92841 729 aaKnown RBP28.87■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 130.5 ms