RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 SENP3Q9H4L4 574 aaPredicted RBP19.06■□□□□ 0.64
PRPF40A-203ENST00000448428 NUTM2DQ5VT03 806 aaPredicted RBP19.05■□□□□ 0.64
PRPF40A-203ENST00000448428 BCANQ96GW7 911 aa19.05■□□□□ 0.64
PRPF40A-203ENST00000448428 PPP1R15AO75807 674 aaPredicted RBP19.04■□□□□ 0.64
PRPF40A-203ENST00000448428 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.04■□□□□ 0.64
PRPF40A-203ENST00000448428 SETD5Q9C0A6 1442 aa19.04■□□□□ 0.64
PRPF40A-203ENST00000448428 CLTCL1P53675 1640 aa19.03■□□□□ 0.64
PRPF40A-203ENST00000448428 UBAP1LF5GYI3 381 aa19.03■□□□□ 0.64
PRPF40A-203ENST00000448428 TRPM2O94759 1503 aa19.03■□□□□ 0.64
PRPF40A-203ENST00000448428 PLEKHG1Q9ULL1 1385 aa19.02■□□□□ 0.64
PRPF40A-203ENST00000448428 LRRC7Q96NW7 1537 aa19.01■□□□□ 0.63
PRPF40A-203ENST00000448428 FOXD1Q16676 465 aa19.01■□□□□ 0.63
PRPF40A-203ENST00000448428 MPHOSPH9Q99550 1183 aa19.01■□□□□ 0.63
PRPF40A-203ENST00000448428 KIF1BO60333 1816 aa19■□□□□ 0.63
PRPF40A-203ENST00000448428 KCNA6P17658 529 aa18.99■□□□□ 0.63
PRPF40A-203ENST00000448428 ZNF326Q5BKZ1 582 aaKnown RBP18.99■□□□□ 0.63
PRPF40A-203ENST00000448428 ACIN1Q9UKV3 1341 aaKnown RBP18.98■□□□□ 0.63
PRPF40A-203ENST00000448428 TBX22Q9Y458 520 aa18.97■□□□□ 0.63
PRPF40A-203ENST00000448428 XIRP1Q702N8 1843 aaKnown RBP18.97■□□□□ 0.63
PRPF40A-203ENST00000448428 RAB3GAP2Q9H2M9 1393 aa18.96■□□□□ 0.63
PRPF40A-203ENST00000448428 CHD2O14647 1828 aaKnown RBP18.95■□□□□ 0.62
PRPF40A-203ENST00000448428 TOM1O60784 492 aa18.95■□□□□ 0.62
PRPF40A-203ENST00000448428 ADAMTS13Q76LX8 1427 aa18.94■□□□□ 0.62
PRPF40A-203ENST00000448428 PROSER2Q86WR7 435 aaPredicted RBP18.93■□□□□ 0.62
PRPF40A-203ENST00000448428 PIP4K2BP78356 416 aa18.92■□□□□ 0.62
PRPF40A-203ENST00000448428 NEXMIFQ5QGS0 1516 aa18.91■□□□□ 0.62
PRPF40A-203ENST00000448428 NWD1Q149M9 1564 aa18.91■□□□□ 0.62
PRPF40A-203ENST00000448428 RBM33Q96EV2 1170 aaKnown RBP18.91■□□□□ 0.62
PRPF40A-203ENST00000448428 ALKQ9UM73 1620 aa18.91■□□□□ 0.62
PRPF40A-203ENST00000448428 TMEM94Q12767 1356 aa18.9■□□□□ 0.62
PRPF40A-203ENST00000448428 DIP2AQ14689 1571 aa18.89■□□□□ 0.62
PRPF40A-203ENST00000448428 NRXN3Q9Y4C0 1643 aa18.89■□□□□ 0.62
PRPF40A-203ENST00000448428 SCAF1Q9H7N4 1312 aaKnown RBP18.89■□□□□ 0.61
PRPF40A-203ENST00000448428 CCDC144AA2RUR9 1427 aa18.88■□□□□ 0.61
PRPF40A-203ENST00000448428 NKTRP30414 1462 aaKnown RBP18.88■□□□□ 0.61
PRPF40A-203ENST00000448428 SETBP1Q9Y6X0 1596 aa18.88■□□□□ 0.61
PRPF40A-203ENST00000448428 HRCP23327 699 aa18.87■□□□□ 0.61
PRPF40A-203ENST00000448428 RPGRIP1LQ68CZ1 1315 aa18.87■□□□□ 0.61
PRPF40A-203ENST00000448428 PIK3R4Q99570 1358 aa18.86■□□□□ 0.61
PRPF40A-203ENST00000448428 VGFO15240 615 aaPredicted RBP18.86■□□□□ 0.61
PRPF40A-203ENST00000448428 PPLO60437 1756 aa18.85■□□□□ 0.61
PRPF40A-203ENST00000448428 PTPRUQ92729 1446 aa18.84■□□□□ 0.61
PRPF40A-203ENST00000448428 RGL3Q3MIN7 710 aa18.84■□□□□ 0.61
PRPF40A-203ENST00000448428 AMOTL2Q9Y2J4 779 aa18.84■□□□□ 0.61
PRPF40A-203ENST00000448428 SPATA31E1Q6ZUB1 1445 aa18.83■□□□□ 0.6
PRPF40A-203ENST00000448428 METP08581 1390 aa18.82■□□□□ 0.6
PRPF40A-203ENST00000448428 HSPA1LP34931 641 aa18.82■□□□□ 0.6
PRPF40A-203ENST00000448428 XRN1Q8IZH2 1706 aaKnown RBP18.78■□□□□ 0.6
PRPF40A-203ENST00000448428 MSH6P52701 1360 aa18.78■□□□□ 0.6
PRPF40A-203ENST00000448428 SETD1AO15047 1707 aaKnown RBP18.77■□□□□ 0.6
PRPF40A-203ENST00000448428 IFT172Q9UG01 1749 aa18.77■□□□□ 0.6
PRPF40A-203ENST00000448428 ADGRF5Q8IZF2 1346 aa18.77■□□□□ 0.6
PRPF40A-203ENST00000448428 NCOA3Q9Y6Q9 1424 aa18.77■□□□□ 0.6
PRPF40A-203ENST00000448428 ANKRD30BQ9BXX2 1392 aa18.77■□□□□ 0.6
PRPF40A-203ENST00000448428 C14orf37Q86TY3 774 aa18.76■□□□□ 0.59
PRPF40A-203ENST00000448428 C19orf44Q9H6X5 657 aa18.74■□□□□ 0.59
PRPF40A-203ENST00000448428 SLAIN2Q9P270 581 aa18.74■□□□□ 0.59
PRPF40A-203ENST00000448428 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.74■□□□□ 0.59
PRPF40A-203ENST00000448428 FAM135BQ49AJ0 1406 aa18.74■□□□□ 0.59
PRPF40A-203ENST00000448428 ROBO1Q9Y6N7 1651 aa18.7■□□□□ 0.58
PRPF40A-203ENST00000448428 ATF3P18847 181 aa18.69■□□□□ 0.58
PRPF40A-203ENST00000448428 CADPS2Q86UW7 1296 aa18.68■□□□□ 0.58
PRPF40A-203ENST00000448428 ROBO2Q9HCK4 1378 aa18.67■□□□□ 0.58
PRPF40A-203ENST00000448428 PIK3C2GO75747 1445 aa18.66■□□□□ 0.58
PRPF40A-203ENST00000448428 TMEM132EQ6IEE7 984 aa18.65■□□□□ 0.58
PRPF40A-203ENST00000448428 C14orf93Q9H972 538 aaKnown RBP18.65■□□□□ 0.58
PRPF40A-203ENST00000448428 DISP3Q9P2K9 1392 aa18.65■□□□□ 0.58
PRPF40A-203ENST00000448428 NRXN1Q9ULB1 1477 aa18.65■□□□□ 0.58
PRPF40A-203ENST00000448428 PTCH1Q13635 1447 aa18.64■□□□□ 0.57
PRPF40A-203ENST00000448428 PRAG1Q86YV5 1406 aa18.64■□□□□ 0.57
PRPF40A-203ENST00000448428 MYOM2P54296 1465 aa18.64■□□□□ 0.57
PRPF40A-203ENST00000448428 NALCNQ8IZF0 1738 aa18.63■□□□□ 0.57
PRPF40A-203ENST00000448428 CFAP70Q5T0N1 1121 aa18.63■□□□□ 0.57
PRPF40A-203ENST00000448428 STK26Q9P289 416 aa18.63■□□□□ 0.57
PRPF40A-203ENST00000448428 DCCP43146 1447 aa18.63■□□□□ 0.57
PRPF40A-203ENST00000448428 ADGRL3Q9HAR2 1447 aa18.63■□□□□ 0.57
PRPF40A-203ENST00000448428 DCAF11Q8TEB1 546 aa18.62■□□□□ 0.57
PRPF40A-203ENST00000448428 KDM2AQ9Y2K7 1162 aa18.62■□□□□ 0.57
PRPF40A-203ENST00000448428 ASXL1Q8IXJ9 1541 aa18.61■□□□□ 0.57
PRPF40A-203ENST00000448428 LRPPRCP42704 1394 aaKnown RBP18.61■□□□□ 0.57
PRPF40A-203ENST00000448428 PHLPP1O60346 1717 aa18.6■□□□□ 0.57
PRPF40A-203ENST00000448428 ABCC11Q96J66 1382 aa18.59■□□□□ 0.57
PRPF40A-203ENST00000448428 MST1RQ04912 1400 aa18.58■□□□□ 0.57
PRPF40A-203ENST00000448428 YTHDC2Q9H6S0 1430 aaKnown RBP18.58■□□□□ 0.57
PRPF40A-203ENST00000448428 DHX57Q6P158 1386 aaKnown RBP18.58■□□□□ 0.57
PRPF40A-203ENST00000448428 TRIM26Q12899 539 aaPredicted RBP18.58■□□□□ 0.56
PRPF40A-203ENST00000448428 BRINP3Q76B58 766 aa18.58■□□□□ 0.56
PRPF40A-203ENST00000448428 WAPLQ7Z5K2 1190 aa18.58■□□□□ 0.56
PRPF40A-203ENST00000448428 TECPR2O15040 1411 aa18.57■□□□□ 0.56
PRPF40A-203ENST00000448428 LAMC1P11047 1609 aa18.57■□□□□ 0.56
PRPF40A-203ENST00000448428 STAC3Q96MF2 364 aa18.57■□□□□ 0.56
PRPF40A-203ENST00000448428 KNDC1Q76NI1 1749 aa18.57■□□□□ 0.56
PRPF40A-203ENST00000448428 MED1Q15648 1581 aaPredicted RBP18.56■□□□□ 0.56
PRPF40A-203ENST00000448428 SIRT1Q96EB6 747 aa18.54■□□□□ 0.56
PRPF40A-203ENST00000448428 PLEKHH1Q9ULM0 1364 aa18.54■□□□□ 0.56
PRPF40A-203ENST00000448428 COL16A1Q07092 1604 aaPredicted RBP18.53■□□□□ 0.56
PRPF40A-203ENST00000448428 AHDC1Q5TGY3 1603 aaPredicted RBP18.52■□□□□ 0.56
PRPF40A-203ENST00000448428 ILDR2Q71H61 639 aa18.52■□□□□ 0.56
PRPF40A-203ENST00000448428 C1orf167Q5SNV9 1468 aa18.52■□□□□ 0.55
PRPF40A-203ENST00000448428 SIN3AQ96ST3 1273 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms