RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 MYO5BQ9ULV0 1848 aa24.24■■□□□ 1.47
SF3A1-204ENST00000447376 MPHOSPH9Q99550 1183 aa24.24■■□□□ 1.47
SF3A1-204ENST00000447376 ZNF326Q5BKZ1 582 aaKnown RBP24.23■■□□□ 1.47
SF3A1-204ENST00000447376 CPS1P31327 1500 aa24.21■■□□□ 1.47
SF3A1-204ENST00000447376 IQSEC2Q5JU85 1478 aa24.2■■□□□ 1.47
SF3A1-204ENST00000447376 ZFYVE9O95405 1425 aa24.19■■□□□ 1.46
SF3A1-204ENST00000447376 CLTCL1P53675 1640 aa24.19■■□□□ 1.46
SF3A1-204ENST00000447376 KIF1BO60333 1816 aa24.19■■□□□ 1.46
SF3A1-204ENST00000447376 ILDR1Q86SU0 546 aaPredicted RBP24.18■■□□□ 1.46
SF3A1-204ENST00000447376 PLEKHG1Q9ULL1 1385 aa24.17■■□□□ 1.46
SF3A1-204ENST00000447376 HRCP23327 699 aa24.17■■□□□ 1.46
SF3A1-204ENST00000447376 CCDC144AA2RUR9 1427 aa24.16■■□□□ 1.46
SF3A1-204ENST00000447376 TRIM26Q12899 539 aaPredicted RBP24.15■■□□□ 1.46
SF3A1-204ENST00000447376 FOXD1Q16676 465 aa24.15■■□□□ 1.46
SF3A1-204ENST00000447376 SLC26A8Q96RN1 970 aa24.14■■□□□ 1.45
SF3A1-204ENST00000447376 NUTM2DQ5VT03 806 aaPredicted RBP24.12■■□□□ 1.45
SF3A1-204ENST00000447376 SENP3Q9H4L4 574 aaPredicted RBP24.1■■□□□ 1.45
SF3A1-204ENST00000447376 RPGRIP1LQ68CZ1 1315 aa24.08■■□□□ 1.44
SF3A1-204ENST00000447376 DIP2AQ14689 1571 aa24.07■■□□□ 1.44
SF3A1-204ENST00000447376 KCNA6P17658 529 aa24.06■■□□□ 1.44
SF3A1-204ENST00000447376 TBX22Q9Y458 520 aa24.06■■□□□ 1.44
SF3A1-204ENST00000447376 VGFO15240 615 aaPredicted RBP24.05■■□□□ 1.44
SF3A1-204ENST00000447376 UBAP1LF5GYI3 381 aa24.04■■□□□ 1.44
SF3A1-204ENST00000447376 NEXMIFQ5QGS0 1516 aa24.04■■□□□ 1.44
SF3A1-204ENST00000447376 STRCP1A6NGW2 1772 aa24.01■■□□□ 1.43
SF3A1-204ENST00000447376 LRRC7Q96NW7 1537 aa24.01■■□□□ 1.43
SF3A1-204ENST00000447376 TOM1O60784 492 aa24.01■■□□□ 1.43
SF3A1-204ENST00000447376 PIK3R4Q99570 1358 aa24■■□□□ 1.43
SF3A1-204ENST00000447376 NKTRP30414 1462 aaKnown RBP24■■□□□ 1.43
SF3A1-204ENST00000447376 RGL3Q3MIN7 710 aa23.99■■□□□ 1.43
SF3A1-204ENST00000447376 PROSER2Q86WR7 435 aaPredicted RBP23.99■■□□□ 1.43
SF3A1-204ENST00000447376 ADAMTS13Q76LX8 1427 aa23.99■■□□□ 1.43
SF3A1-204ENST00000447376 SETBP1Q9Y6X0 1596 aa23.98■■□□□ 1.43
SF3A1-204ENST00000447376 NWD1Q149M9 1564 aa23.97■■□□□ 1.43
SF3A1-204ENST00000447376 ANKRD30BQ9BXX2 1392 aa23.95■■□□□ 1.42
SF3A1-204ENST00000447376 SCAF1Q9H7N4 1312 aaKnown RBP23.95■■□□□ 1.42
SF3A1-204ENST00000447376 PPLO60437 1756 aa23.95■■□□□ 1.42
SF3A1-204ENST00000447376 CHD2O14647 1828 aaKnown RBP23.94■■□□□ 1.42
SF3A1-204ENST00000447376 SPATA31E1Q6ZUB1 1445 aa23.93■■□□□ 1.42
SF3A1-204ENST00000447376 TMEM94Q12767 1356 aa23.92■■□□□ 1.42
SF3A1-204ENST00000447376 NRXN3Q9Y4C0 1643 aa23.91■■□□□ 1.42
SF3A1-204ENST00000447376 C14orf37Q86TY3 774 aa23.9■■□□□ 1.42
SF3A1-204ENST00000447376 PIP4K2BP78356 416 aa23.89■■□□□ 1.41
SF3A1-204ENST00000447376 AMOTL2Q9Y2J4 779 aa23.89■■□□□ 1.41
SF3A1-204ENST00000447376 MSH6P52701 1360 aa23.88■■□□□ 1.41
SF3A1-204ENST00000447376 NCOA3Q9Y6Q9 1424 aa23.85■■□□□ 1.41
SF3A1-204ENST00000447376 IFT172Q9UG01 1749 aa23.85■■□□□ 1.41
SF3A1-204ENST00000447376 XIRP1Q702N8 1843 aaKnown RBP23.84■■□□□ 1.41
SF3A1-204ENST00000447376 METP08581 1390 aa23.84■■□□□ 1.41
SF3A1-204ENST00000447376 ALKQ9UM73 1620 aa23.84■■□□□ 1.41
SF3A1-204ENST00000447376 RBM33Q96EV2 1170 aaKnown RBP23.83■■□□□ 1.41
SF3A1-204ENST00000447376 ADGRF5Q8IZF2 1346 aa23.83■■□□□ 1.4
SF3A1-204ENST00000447376 PTPRUQ92729 1446 aa23.81■■□□□ 1.4
SF3A1-204ENST00000447376 XRN1Q8IZH2 1706 aaKnown RBP23.8■■□□□ 1.4
SF3A1-204ENST00000447376 MYOM2P54296 1465 aa23.8■■□□□ 1.4
SF3A1-204ENST00000447376 STAC3Q96MF2 364 aa23.79■■□□□ 1.4
SF3A1-204ENST00000447376 PCGF6Q9BYE7 350 aa23.79■■□□□ 1.4
SF3A1-204ENST00000447376 PIK3C2GO75747 1445 aa23.77■■□□□ 1.4
SF3A1-204ENST00000447376 ATF3P18847 181 aa23.76■■□□□ 1.39
SF3A1-204ENST00000447376 DCAF11Q8TEB1 546 aa23.76■■□□□ 1.39
SF3A1-204ENST00000447376 C19orf44Q9H6X5 657 aa23.76■■□□□ 1.39
SF3A1-204ENST00000447376 SETD1AO15047 1707 aaKnown RBP23.76■■□□□ 1.39
SF3A1-204ENST00000447376 CADPS2Q86UW7 1296 aa23.75■■□□□ 1.39
SF3A1-204ENST00000447376 LAMC1P11047 1609 aa23.74■■□□□ 1.39
SF3A1-204ENST00000447376 KDM2AQ9Y2K7 1162 aa23.74■■□□□ 1.39
SF3A1-204ENST00000447376 PTCH1Q13635 1447 aa23.74■■□□□ 1.39
SF3A1-204ENST00000447376 NRXN1Q9ULB1 1477 aa23.71■■□□□ 1.39
SF3A1-204ENST00000447376 SLAIN2Q9P270 581 aa23.7■■□□□ 1.38
SF3A1-204ENST00000447376 DCCP43146 1447 aa23.69■■□□□ 1.38
SF3A1-204ENST00000447376 DHX57Q6P158 1386 aaKnown RBP23.69■■□□□ 1.38
SF3A1-204ENST00000447376 C14orf93Q9H972 538 aaKnown RBP23.69■■□□□ 1.38
SF3A1-204ENST00000447376 FAM135BQ49AJ0 1406 aa23.68■■□□□ 1.38
SF3A1-204ENST00000447376 PRAG1Q86YV5 1406 aa23.68■■□□□ 1.38
SF3A1-204ENST00000447376 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.68■■□□□ 1.38
SF3A1-204ENST00000447376 HSPA1LP34931 641 aa23.68■■□□□ 1.38
SF3A1-204ENST00000447376 STK26Q9P289 416 aa23.68■■□□□ 1.38
SF3A1-204ENST00000447376 ADGRL3Q9HAR2 1447 aa23.67■■□□□ 1.38
SF3A1-204ENST00000447376 LRPPRCP42704 1394 aaKnown RBP23.67■■□□□ 1.38
SF3A1-204ENST00000447376 CFAP70Q5T0N1 1121 aa23.66■■□□□ 1.38
SF3A1-204ENST00000447376 TMEM132EQ6IEE7 984 aa23.66■■□□□ 1.38
SF3A1-204ENST00000447376 ROBO2Q9HCK4 1378 aa23.65■■□□□ 1.38
SF3A1-204ENST00000447376 YTHDC2Q9H6S0 1430 aaKnown RBP23.64■■□□□ 1.37
SF3A1-204ENST00000447376 ABCC11Q96J66 1382 aa23.64■■□□□ 1.37
SF3A1-204ENST00000447376 ROBO1Q9Y6N7 1651 aa23.64■■□□□ 1.37
SF3A1-204ENST00000447376 TECPR2O15040 1411 aa23.63■■□□□ 1.37
SF3A1-204ENST00000447376 NEUROD1Q13562 356 aa23.62■■□□□ 1.37
SF3A1-204ENST00000447376 KNDC1Q76NI1 1749 aa23.62■■□□□ 1.37
SF3A1-204ENST00000447376 ASXL1Q8IXJ9 1541 aa23.61■■□□□ 1.37
SF3A1-204ENST00000447376 NALCNQ8IZF0 1738 aa23.61■■□□□ 1.37
SF3A1-204ENST00000447376 SIRT1Q96EB6 747 aa23.57■■□□□ 1.36
SF3A1-204ENST00000447376 SIN3AQ96ST3 1273 aa23.57■■□□□ 1.36
SF3A1-204ENST00000447376 WAPLQ7Z5K2 1190 aa23.55■■□□□ 1.36
SF3A1-204ENST00000447376 POGKQ9P215 609 aa23.55■■□□□ 1.36
SF3A1-204ENST00000447376 MST1RQ04912 1400 aa23.54■■□□□ 1.36
SF3A1-204ENST00000447376 L3MBTL2Q969R5 705 aa23.52■■□□□ 1.36
SF3A1-204ENST00000447376 DLC1Q96QB1 1528 aa23.52■■□□□ 1.36
SF3A1-204ENST00000447376 ADGRB1O14514 1584 aa23.52■■□□□ 1.36
SF3A1-204ENST00000447376 CDC42BPGQ6DT37 1551 aa23.52■■□□□ 1.36
SF3A1-204ENST00000447376 PHLPP1O60346 1717 aa23.51■■□□□ 1.35
SF3A1-204ENST00000447376 TRAK1Q9UPV9 953 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms