RNA–Protein interactions for RNA: ENST00000444440.1

SF3A1-203, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 777 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-203ENST00000444440 EID1Q9Y6B2 187 aa16.56■□□□□ 0.24
SF3A1-203ENST00000444440 HFM1A2PYH4 1435 aa16.55■□□□□ 0.24
SF3A1-203ENST00000444440 RIMS2Q9UQ26 1411 aa16.55■□□□□ 0.24
SF3A1-203ENST00000444440 SENP3Q9H4L4 574 aaPredicted RBP16.55■□□□□ 0.24
SF3A1-203ENST00000444440 NRXN3Q9Y4C0 1643 aa16.54■□□□□ 0.24
SF3A1-203ENST00000444440 SLC26A8Q96RN1 970 aa16.53■□□□□ 0.24
SF3A1-203ENST00000444440 TRPM2O94759 1503 aa16.52■□□□□ 0.24
SF3A1-203ENST00000444440 PLEKHG1Q9ULL1 1385 aa16.51■□□□□ 0.23
SF3A1-203ENST00000444440 CHGAP10645 457 aaKnown RBP16.5■□□□□ 0.23
SF3A1-203ENST00000444440 NUTM2DQ5VT03 806 aaPredicted RBP16.5■□□□□ 0.23
SF3A1-203ENST00000444440 PIP4K2BP78356 416 aa16.49■□□□□ 0.23
SF3A1-203ENST00000444440 ADAMTS13Q76LX8 1427 aa16.48■□□□□ 0.23
SF3A1-203ENST00000444440 NEXMIFQ5QGS0 1516 aa16.48■□□□□ 0.23
SF3A1-203ENST00000444440 DIP2AQ14689 1571 aa16.47■□□□□ 0.23
SF3A1-203ENST00000444440 SCAF1Q9H7N4 1312 aaKnown RBP16.46■□□□□ 0.23
SF3A1-203ENST00000444440 SETD1AO15047 1707 aaKnown RBP16.46■□□□□ 0.23
SF3A1-203ENST00000444440 RBM33Q96EV2 1170 aaKnown RBP16.46■□□□□ 0.23
SF3A1-203ENST00000444440 NKTRP30414 1462 aaKnown RBP16.46■□□□□ 0.23
SF3A1-203ENST00000444440 PPLO60437 1756 aa16.46■□□□□ 0.22
SF3A1-203ENST00000444440 TOM1O60784 492 aa16.45■□□□□ 0.22
SF3A1-203ENST00000444440 HSPA1LP34931 641 aa16.45■□□□□ 0.22
SF3A1-203ENST00000444440 SETBP1Q9Y6X0 1596 aa16.44■□□□□ 0.22
SF3A1-203ENST00000444440 TMEM94Q12767 1356 aa16.44■□□□□ 0.22
SF3A1-203ENST00000444440 KCNA6P17658 529 aa16.44■□□□□ 0.22
SF3A1-203ENST00000444440 XRN1Q8IZH2 1706 aaKnown RBP16.44■□□□□ 0.22
SF3A1-203ENST00000444440 ROBO1Q9Y6N7 1651 aa16.43■□□□□ 0.22
SF3A1-203ENST00000444440 IFT172Q9UG01 1749 aa16.42■□□□□ 0.22
SF3A1-203ENST00000444440 PPP1R15AO75807 674 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-203ENST00000444440 TRIM52Q96A61 297 aa16.42■□□□□ 0.22
SF3A1-203ENST00000444440 BCANQ96GW7 911 aa16.42■□□□□ 0.22
SF3A1-203ENST00000444440 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.42■□□□□ 0.22
SF3A1-203ENST00000444440 PTPRUQ92729 1446 aa16.41■□□□□ 0.22
SF3A1-203ENST00000444440 MED1Q15648 1581 aaPredicted RBP16.41■□□□□ 0.22
SF3A1-203ENST00000444440 DISP3Q9P2K9 1392 aa16.39■□□□□ 0.21
SF3A1-203ENST00000444440 PROSER2Q86WR7 435 aaPredicted RBP16.39■□□□□ 0.21
SF3A1-203ENST00000444440 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.39■□□□□ 0.21
SF3A1-203ENST00000444440 TBX22Q9Y458 520 aa16.39■□□□□ 0.21
SF3A1-203ENST00000444440 FOXD1Q16676 465 aa16.38■□□□□ 0.21
SF3A1-203ENST00000444440 HDGFP51858 240 aaKnown RBP16.37■□□□□ 0.21
SF3A1-203ENST00000444440 SLC4A1APQ9BWU0 796 aaKnown RBP16.37■□□□□ 0.21
SF3A1-203ENST00000444440 ILDR2Q71H61 639 aa16.36■□□□□ 0.21
SF3A1-203ENST00000444440 NALCNQ8IZF0 1738 aa16.36■□□□□ 0.21
SF3A1-203ENST00000444440 ZNF326Q5BKZ1 582 aaKnown RBP16.35■□□□□ 0.21
SF3A1-203ENST00000444440 PHLPP1O60346 1717 aa16.34■□□□□ 0.21
SF3A1-203ENST00000444440 PIK3R4Q99570 1358 aa16.34■□□□□ 0.21
SF3A1-203ENST00000444440 METP08581 1390 aa16.33■□□□□ 0.2
SF3A1-203ENST00000444440 SETD5Q9C0A6 1442 aa16.32■□□□□ 0.2
SF3A1-203ENST00000444440 FAM135BQ49AJ0 1406 aa16.31■□□□□ 0.2
SF3A1-203ENST00000444440 MSH6P52701 1360 aa16.31■□□□□ 0.2
SF3A1-203ENST00000444440 MPHOSPH9Q99550 1183 aa16.3■□□□□ 0.2
SF3A1-203ENST00000444440 AMOTL2Q9Y2J4 779 aa16.29■□□□□ 0.2
SF3A1-203ENST00000444440 COL16A1Q07092 1604 aaPredicted RBP16.29■□□□□ 0.2
SF3A1-203ENST00000444440 SPATA31E1Q6ZUB1 1445 aa16.28■□□□□ 0.2
SF3A1-203ENST00000444440 RAB3GAP2Q9H2M9 1393 aa16.28■□□□□ 0.2
SF3A1-203ENST00000444440 NCOA3Q9Y6Q9 1424 aa16.28■□□□□ 0.2
SF3A1-203ENST00000444440 CCDC144AA2RUR9 1427 aa16.26■□□□□ 0.19
SF3A1-203ENST00000444440 ASXL1Q8IXJ9 1541 aa16.24■□□□□ 0.19
SF3A1-203ENST00000444440 NHSL1Q5SYE7 1610 aa16.24■□□□□ 0.19
SF3A1-203ENST00000444440 KNDC1Q76NI1 1749 aa16.23■□□□□ 0.19
SF3A1-203ENST00000444440 SLAIN2Q9P270 581 aa16.23■□□□□ 0.19
SF3A1-203ENST00000444440 AHDC1Q5TGY3 1603 aaPredicted RBP16.23■□□□□ 0.19
SF3A1-203ENST00000444440 ADGRF5Q8IZF2 1346 aa16.22■□□□□ 0.19
SF3A1-203ENST00000444440 RPGRIP1LQ68CZ1 1315 aa16.21■□□□□ 0.19
SF3A1-203ENST00000444440 C14orf37Q86TY3 774 aa16.21■□□□□ 0.19
SF3A1-203ENST00000444440 MST1RQ04912 1400 aa16.2■□□□□ 0.18
SF3A1-203ENST00000444440 ADGRL3Q9HAR2 1447 aa16.2■□□□□ 0.18
SF3A1-203ENST00000444440 VGFO15240 615 aaPredicted RBP16.2■□□□□ 0.18
SF3A1-203ENST00000444440 RGL3Q3MIN7 710 aa16.2■□□□□ 0.18
SF3A1-203ENST00000444440 C19orf44Q9H6X5 657 aa16.2■□□□□ 0.18
SF3A1-203ENST00000444440 ROBO2Q9HCK4 1378 aa16.2■□□□□ 0.18
SF3A1-203ENST00000444440 SHPRHQ149N8 1683 aa16.2■□□□□ 0.18
SF3A1-203ENST00000444440 DCCP43146 1447 aa16.19■□□□□ 0.18
SF3A1-203ENST00000444440 PTCH1Q13635 1447 aa16.19■□□□□ 0.18
SF3A1-203ENST00000444440 PRAG1Q86YV5 1406 aa16.19■□□□□ 0.18
SF3A1-203ENST00000444440 PIK3C2GO75747 1445 aa16.18■□□□□ 0.18
SF3A1-203ENST00000444440 RGPD8O14715 1765 aaPredicted RBP16.16■□□□□ 0.18
SF3A1-203ENST00000444440 ATF3P18847 181 aa16.16■□□□□ 0.18
SF3A1-203ENST00000444440 CADPS2Q86UW7 1296 aa16.16■□□□□ 0.18
SF3A1-203ENST00000444440 LAMC1P11047 1609 aa16.16■□□□□ 0.18
SF3A1-203ENST00000444440 NRXN1Q9ULB1 1477 aa16.15■□□□□ 0.18
SF3A1-203ENST00000444440 BRINP3Q76B58 766 aa16.14■□□□□ 0.17
SF3A1-203ENST00000444440 RGS17Q9UGC6 210 aaPredicted RBP16.14■□□□□ 0.17
SF3A1-203ENST00000444440 ANKRD30BQ9BXX2 1392 aa16.13■□□□□ 0.17
SF3A1-203ENST00000444440 LRP6O75581 1613 aa16.13■□□□□ 0.17
SF3A1-203ENST00000444440 MYOM2P54296 1465 aa16.13■□□□□ 0.17
SF3A1-203ENST00000444440 CDC42BPGQ6DT37 1551 aa16.12■□□□□ 0.17
SF3A1-203ENST00000444440 FMN2Q9NZ56 1722 aa16.11■□□□□ 0.17
SF3A1-203ENST00000444440 SOCS7O14512 581 aa16.11■□□□□ 0.17
SF3A1-203ENST00000444440 TECPR2O15040 1411 aa16.11■□□□□ 0.17
SF3A1-203ENST00000444440 C1orf167Q5SNV9 1468 aa16.1■□□□□ 0.17
SF3A1-203ENST00000444440 TMEM132EQ6IEE7 984 aa16.1■□□□□ 0.17
SF3A1-203ENST00000444440 ACIN1Q9UKV3 1341 aaKnown RBP16.1■□□□□ 0.17
SF3A1-203ENST00000444440 JCADQ9P266 1359 aa16.1■□□□□ 0.17
SF3A1-203ENST00000444440 DDX17Q92841 729 aaKnown RBP16.09■□□□□ 0.17
SF3A1-203ENST00000444440 PHF23Q9BUL5 403 aaPredicted RBP16.09■□□□□ 0.17
SF3A1-203ENST00000444440 PLEKHH1Q9ULM0 1364 aa16.09■□□□□ 0.17
SF3A1-203ENST00000444440 LRPPRCP42704 1394 aaKnown RBP16.08■□□□□ 0.16
SF3A1-203ENST00000444440 YTHDC2Q9H6S0 1430 aaKnown RBP16.08■□□□□ 0.16
SF3A1-203ENST00000444440 STK26Q9P289 416 aa16.07■□□□□ 0.16
SF3A1-203ENST00000444440 ADGRB1O14514 1584 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms