RNA–Protein interactions for RNA: ENST00000425562.6

LRCH3-203, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LRCH3, Length 2,970 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-203ENST00000425562 CHD1O14646 1710 aa17.47■□□□□ 0.39
LRCH3-203ENST00000425562 IGHDP01880 384 aa17.46■□□□□ 0.39
LRCH3-203ENST00000425562 NEUROD2Q15784 382 aa17.45■□□□□ 0.38
LRCH3-203ENST00000425562 COL17A1Q9UMD9 1497 aaPredicted RBP17.44■□□□□ 0.38
LRCH3-203ENST00000425562 RRAGDQ9NQL2 400 aaPredicted RBP17.44■□□□□ 0.38
LRCH3-203ENST00000425562 TRAPPC8Q9Y2L5 1435 aa17.44■□□□□ 0.38
LRCH3-203ENST00000425562 MYO5CQ9NQX4 1742 aa17.44■□□□□ 0.38
LRCH3-203ENST00000425562 GOLGA2Q08379 1002 aa17.43■□□□□ 0.38
LRCH3-203ENST00000425562 CANXP27824 592 aaKnown RBP17.43■□□□□ 0.38
LRCH3-203ENST00000425562 KNSTRNQ9Y448 316 aa17.43■□□□□ 0.38
LRCH3-203ENST00000425562 APAF1O14727 1248 aa17.43■□□□□ 0.38
LRCH3-203ENST00000425562 EFCAB2Q5VUJ9 269 aa17.42■□□□□ 0.38
LRCH3-203ENST00000425562 PANK1Q8TE04 598 aa17.42■□□□□ 0.38
LRCH3-203ENST00000425562 COG6Q9Y2V7 657 aa17.42■□□□□ 0.38
LRCH3-203ENST00000425562 SENP3Q9H4L4 574 aaPredicted RBP17.42■□□□□ 0.38
LRCH3-203ENST00000425562 DMRT2Q9Y5R5 561 aa17.42■□□□□ 0.38
LRCH3-203ENST00000425562 GPRASP1Q5JY77 1395 aa17.4■□□□□ 0.38
LRCH3-203ENST00000425562 BCL2L13Q9BXK5 485 aa17.4■□□□□ 0.38
LRCH3-203ENST00000425562 SPAG9O60271 1321 aaKnown RBP17.4■□□□□ 0.38
LRCH3-203ENST00000425562 PPP2R1AP30153 589 aa17.39■□□□□ 0.37
LRCH3-203ENST00000425562 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.38■□□□□ 0.37
LRCH3-203ENST00000425562 PRDM15P57071 1507 aaPredicted RBP17.38■□□□□ 0.37
LRCH3-203ENST00000425562 UNC13BO14795 1591 aa17.38■□□□□ 0.37
LRCH3-203ENST00000425562 MAGI2Q86UL8 1455 aa17.37■□□□□ 0.37
LRCH3-203ENST00000425562 FAM43AQ8N2R8 423 aa17.37■□□□□ 0.37
LRCH3-203ENST00000425562 PANK2Q9BZ23 570 aa17.37■□□□□ 0.37
LRCH3-203ENST00000425562 TNNT2P45379 298 aaPredicted RBP17.37■□□□□ 0.37
LRCH3-203ENST00000425562 NAP1L5Q96NT1 182 aaPredicted RBP17.37■□□□□ 0.37
LRCH3-203ENST00000425562 KIF3BO15066 747 aa17.36■□□□□ 0.37
LRCH3-203ENST00000425562 CLUAP1Q96AJ1 413 aa17.36■□□□□ 0.37
LRCH3-203ENST00000425562 TNNQ9UQP3 1299 aa17.36■□□□□ 0.37
LRCH3-203ENST00000425562 RRP7AQ9Y3A4 280 aaKnown RBP17.36■□□□□ 0.37
LRCH3-203ENST00000425562 USP19O94966 1318 aa17.35■□□□□ 0.37
LRCH3-203ENST00000425562 IQGAP3Q86VI3 1631 aa17.35■□□□□ 0.37
LRCH3-203ENST00000425562 CHGAP10645 457 aaKnown RBP17.35■□□□□ 0.37
LRCH3-203ENST00000425562 RSPH6AQ9H0K4 717 aa17.35■□□□□ 0.37
LRCH3-203ENST00000425562 DUOX2Q9NRD8 1548 aa17.35■□□□□ 0.37
LRCH3-203ENST00000425562 CFAP70Q5T0N1 1121 aa17.34■□□□□ 0.37
LRCH3-203ENST00000425562 ABCC2Q92887 1545 aa17.34■□□□□ 0.37
LRCH3-203ENST00000425562 PLCH2O75038 1416 aa17.33■□□□□ 0.37
LRCH3-203ENST00000425562 BLMP54132 1417 aaPredicted RBP17.33■□□□□ 0.37
LRCH3-203ENST00000425562 SLFN5Q08AF3 891 aa17.33■□□□□ 0.36
LRCH3-203ENST00000425562 AMER1Q5JTC6 1135 aaPredicted RBP17.33■□□□□ 0.36
LRCH3-203ENST00000425562 MAST1Q9Y2H9 1570 aa17.32■□□□□ 0.36
LRCH3-203ENST00000425562 WDR7Q9Y4E6 1490 aa17.31■□□□□ 0.36
LRCH3-203ENST00000425562 PLXNC1O60486 1568 aa17.29■□□□□ 0.36
LRCH3-203ENST00000425562 BECN1Q14457 450 aa17.29■□□□□ 0.36
LRCH3-203ENST00000425562 ZMYM4Q5VZL5 1548 aa17.29■□□□□ 0.36
LRCH3-203ENST00000425562 ZCCHC11Q5TAX3 1644 aaKnown RBP17.28■□□□□ 0.36
LRCH3-203ENST00000425562 UGGT1Q9NYU2 1555 aa17.28■□□□□ 0.36
LRCH3-203ENST00000425562 ADGRF5Q8IZF2 1346 aa17.28■□□□□ 0.36
LRCH3-203ENST00000425562 EIF2AK4Q9P2K8 1649 aaKnown RBP17.27■□□□□ 0.36
LRCH3-203ENST00000425562 ATP10AO60312 1499 aa17.27■□□□□ 0.35
LRCH3-203ENST00000425562 XRCC6P12956 609 aaKnown RBP eCLIP17.27■□□□□ 0.35
LRCH3-203ENST00000425562 NUTM2DQ5VT03 806 aaPredicted RBP17.27■□□□□ 0.35
LRCH3-203ENST00000425562 SCAPERQ9BY12 1400 aa17.26■□□□□ 0.35
LRCH3-203ENST00000425562 TBC1D2Q9BYX2 928 aa17.26■□□□□ 0.35
LRCH3-203ENST00000425562 VSIG10Q8N0Z9 540 aa17.25■□□□□ 0.35
LRCH3-203ENST00000425562 ABCC1P33527 1531 aa17.25■□□□□ 0.35
LRCH3-203ENST00000425562 CFAP65Q6ZU64 1925 aaKnown RBP17.24■□□□□ 0.35
LRCH3-203ENST00000425562 ZNF521Q96K83 1311 aa17.24■□□□□ 0.35
LRCH3-203ENST00000425562 SHROOM2Q13796 1616 aa17.24■□□□□ 0.35
LRCH3-203ENST00000425562 MADDQ8WXG6 1647 aa17.24■□□□□ 0.35
LRCH3-203ENST00000425562 MFAP1P55081 439 aaKnown RBP17.23■□□□□ 0.35
LRCH3-203ENST00000425562 RLBP1P12271 317 aa17.23■□□□□ 0.35
LRCH3-203ENST00000425562 CARD14Q9BXL6 1004 aa17.23■□□□□ 0.35
LRCH3-203ENST00000425562 PCDHB15Q9Y5E8 787 aa17.23■□□□□ 0.35
LRCH3-203ENST00000425562 CLTCL1P53675 1640 aa17.23■□□□□ 0.35
LRCH3-203ENST00000425562 GOLGA6L3A6NEY3 463 aa17.22■□□□□ 0.35
LRCH3-203ENST00000425562 PNNQ9H307 717 aaKnown RBP17.22■□□□□ 0.35
LRCH3-203ENST00000425562 UPF2Q9HAU5 1272 aaKnown RBP17.22■□□□□ 0.35
LRCH3-203ENST00000425562 TRAK1Q9UPV9 953 aa17.22■□□□□ 0.35
LRCH3-203ENST00000425562 CENPJQ9HC77 1338 aaPredicted RBP17.22■□□□□ 0.35
LRCH3-203ENST00000425562 SCAF11Q99590 1463 aaKnown RBP17.22■□□□□ 0.35
LRCH3-203ENST00000425562 LAMC1P11047 1609 aa17.21■□□□□ 0.35
LRCH3-203ENST00000425562 CDCA8Q53HL2 280 aa17.21■□□□□ 0.35
LRCH3-203ENST00000425562 TMEM132EQ6IEE7 984 aa17.21■□□□□ 0.35
LRCH3-203ENST00000425562 PDZRN3Q9UPQ7 1066 aa17.21■□□□□ 0.35
LRCH3-203ENST00000425562 RNF17Q9BXT8 1623 aaKnown RBP17.2■□□□□ 0.34
LRCH3-203ENST00000425562 FOXD4L1Q9NU39 408 aa17.2■□□□□ 0.34
LRCH3-203ENST00000425562 L1TD1Q5T7N2 865 aaKnown RBP17.19■□□□□ 0.34
LRCH3-203ENST00000425562 GGT6Q6P531 493 aa17.19■□□□□ 0.34
LRCH3-203ENST00000425562 ANTXR1Q9H6X2 564 aa17.19■□□□□ 0.34
LRCH3-203ENST00000425562 KANK1Q14678 1352 aa17.18■□□□□ 0.34
LRCH3-203ENST00000425562 ZFYVE16Q7Z3T8 1539 aa17.17■□□□□ 0.34
LRCH3-203ENST00000425562 ASXL1Q8IXJ9 1541 aa17.17■□□□□ 0.34
LRCH3-203ENST00000425562 IQGAP1P46940 1657 aa17.17■□□□□ 0.34
LRCH3-203ENST00000425562 E9PSI1 815 aa17.17■□□□□ 0.34
LRCH3-203ENST00000425562 SAFB2Q14151 953 aaKnown RBP eCLIP17.16■□□□□ 0.34
LRCH3-203ENST00000425562 SLC12A5Q9H2X9 1139 aa17.16■□□□□ 0.34
LRCH3-203ENST00000425562 FANCAO15360 1455 aa17.16■□□□□ 0.34
LRCH3-203ENST00000425562 SPHKAPQ2M3C7 1700 aa17.16■□□□□ 0.34
LRCH3-203ENST00000425562 PKNOX2Q96KN3 472 aa17.16■□□□□ 0.34
LRCH3-203ENST00000425562 NKTRP30414 1462 aaKnown RBP17.16■□□□□ 0.34
LRCH3-203ENST00000425562 TRPM2O94759 1503 aa17.16■□□□□ 0.34
LRCH3-203ENST00000425562 MCM4P33991 863 aa17.16■□□□□ 0.34
LRCH3-203ENST00000425562 EIF3AQ14152 1382 aaKnown RBP17.15■□□□□ 0.34
LRCH3-203ENST00000425562 CGNL1Q0VF96 1302 aa17.15■□□□□ 0.34
LRCH3-203ENST00000425562 MAPK8IP3Q9UPT6 1336 aa17.14■□□□□ 0.33
LRCH3-203ENST00000425562 TRAK2O60296 914 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms