RNA–Protein interactions for RNA: ENST00000423271.7

USB1-202, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2 BASIC

Gene USB1, Length 1,217 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-202ENST00000423271 XIRP1Q702N8 1843 aaKnown RBP23.07■■□□□ 1.28
USB1-202ENST00000423271 SENP3Q9H4L4 574 aaPredicted RBP23.06■■□□□ 1.28
USB1-202ENST00000423271 CHGAP10645 457 aaKnown RBP23.05■■□□□ 1.28
USB1-202ENST00000423271 DISP3Q9P2K9 1392 aa23.04■■□□□ 1.28
USB1-202ENST00000423271 SPHKAPQ2M3C7 1700 aa23.03■■□□□ 1.28
USB1-202ENST00000423271 PLEKHG1Q9ULL1 1385 aa23.02■■□□□ 1.28
USB1-202ENST00000423271 HSPA1LP34931 641 aa23.02■■□□□ 1.28
USB1-202ENST00000423271 PPP1R15AO75807 674 aaPredicted RBP23.01■■□□□ 1.27
USB1-202ENST00000423271 BCANQ96GW7 911 aa23.01■■□□□ 1.27
USB1-202ENST00000423271 NWD1Q149M9 1564 aa23.01■■□□□ 1.27
USB1-202ENST00000423271 KCNA6P17658 529 aa23■■□□□ 1.27
USB1-202ENST00000423271 HFM1A2PYH4 1435 aa22.99■■□□□ 1.27
USB1-202ENST00000423271 NUTM2DQ5VT03 806 aaPredicted RBP22.99■■□□□ 1.27
USB1-202ENST00000423271 TMEM94Q12767 1356 aa22.97■■□□□ 1.27
USB1-202ENST00000423271 NKTRP30414 1462 aaKnown RBP22.96■■□□□ 1.27
USB1-202ENST00000423271 HDGFP51858 240 aaKnown RBP22.95■■□□□ 1.26
USB1-202ENST00000423271 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.95■■□□□ 1.26
USB1-202ENST00000423271 RBM33Q96EV2 1170 aaKnown RBP22.95■■□□□ 1.26
USB1-202ENST00000423271 CLTCL1P53675 1640 aa22.94■■□□□ 1.26
USB1-202ENST00000423271 CHD2O14647 1828 aaKnown RBP22.94■■□□□ 1.26
USB1-202ENST00000423271 ADAMTS13Q76LX8 1427 aa22.93■■□□□ 1.26
USB1-202ENST00000423271 TRPM2O94759 1503 aa22.92■■□□□ 1.26
USB1-202ENST00000423271 PROSER2Q86WR7 435 aaPredicted RBP22.92■■□□□ 1.26
USB1-202ENST00000423271 ILDR2Q71H61 639 aa22.9■■□□□ 1.26
USB1-202ENST00000423271 TRIM52Q96A61 297 aa22.9■■□□□ 1.26
USB1-202ENST00000423271 DIP2AQ14689 1571 aa22.89■■□□□ 1.26
USB1-202ENST00000423271 TBX22Q9Y458 520 aa22.89■■□□□ 1.25
USB1-202ENST00000423271 NRXN3Q9Y4C0 1643 aa22.86■■□□□ 1.25
USB1-202ENST00000423271 MED1Q15648 1581 aaPredicted RBP22.86■■□□□ 1.25
USB1-202ENST00000423271 ZNF326Q5BKZ1 582 aaKnown RBP22.85■■□□□ 1.25
USB1-202ENST00000423271 KIF1BO60333 1816 aa22.84■■□□□ 1.25
USB1-202ENST00000423271 NEXMIFQ5QGS0 1516 aa22.83■■□□□ 1.25
USB1-202ENST00000423271 SLC4A1APQ9BWU0 796 aaKnown RBP22.83■■□□□ 1.25
USB1-202ENST00000423271 SETBP1Q9Y6X0 1596 aa22.83■■□□□ 1.25
USB1-202ENST00000423271 PTPRUQ92729 1446 aa22.82■■□□□ 1.24
USB1-202ENST00000423271 MSH6P52701 1360 aa22.81■■□□□ 1.24
USB1-202ENST00000423271 PIK3R4Q99570 1358 aa22.81■■□□□ 1.24
USB1-202ENST00000423271 FAM135BQ49AJ0 1406 aa22.81■■□□□ 1.24
USB1-202ENST00000423271 ROBO1Q9Y6N7 1651 aa22.81■■□□□ 1.24
USB1-202ENST00000423271 FOXD1Q16676 465 aa22.77■■□□□ 1.24
USB1-202ENST00000423271 XRN1Q8IZH2 1706 aaKnown RBP22.77■■□□□ 1.23
USB1-202ENST00000423271 AMOTL2Q9Y2J4 779 aa22.76■■□□□ 1.23
USB1-202ENST00000423271 NCOA3Q9Y6Q9 1424 aa22.74■■□□□ 1.23
USB1-202ENST00000423271 METP08581 1390 aa22.74■■□□□ 1.23
USB1-202ENST00000423271 C14orf37Q86TY3 774 aa22.73■■□□□ 1.23
USB1-202ENST00000423271 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.73■■□□□ 1.23
USB1-202ENST00000423271 SLAIN2Q9P270 581 aa22.71■■□□□ 1.23
USB1-202ENST00000423271 PPLO60437 1756 aa22.69■■□□□ 1.22
USB1-202ENST00000423271 MPHOSPH9Q99550 1183 aa22.69■■□□□ 1.22
USB1-202ENST00000423271 SETD1AO15047 1707 aaKnown RBP22.68■■□□□ 1.22
USB1-202ENST00000423271 C19orf44Q9H6X5 657 aa22.67■■□□□ 1.22
USB1-202ENST00000423271 SETD5Q9C0A6 1442 aa22.66■■□□□ 1.22
USB1-202ENST00000423271 PHLPP1O60346 1717 aa22.66■■□□□ 1.22
USB1-202ENST00000423271 CCDC144AA2RUR9 1427 aa22.65■■□□□ 1.22
USB1-202ENST00000423271 RPGRIP1LQ68CZ1 1315 aa22.65■■□□□ 1.22
USB1-202ENST00000423271 SOCS7O14512 581 aa22.65■■□□□ 1.22
USB1-202ENST00000423271 VGFO15240 615 aaPredicted RBP22.64■■□□□ 1.21
USB1-202ENST00000423271 CADPS2Q86UW7 1296 aa22.64■■□□□ 1.21
USB1-202ENST00000423271 PHF23Q9BUL5 403 aaPredicted RBP22.64■■□□□ 1.21
USB1-202ENST00000423271 ATF3P18847 181 aa22.63■■□□□ 1.21
USB1-202ENST00000423271 SPATA31E1Q6ZUB1 1445 aa22.62■■□□□ 1.21
USB1-202ENST00000423271 COL16A1Q07092 1604 aaPredicted RBP22.61■■□□□ 1.21
USB1-202ENST00000423271 DCCP43146 1447 aa22.61■■□□□ 1.21
USB1-202ENST00000423271 RAB3GAP2Q9H2M9 1393 aa22.61■■□□□ 1.21
USB1-202ENST00000423271 NALCNQ8IZF0 1738 aa22.6■■□□□ 1.21
USB1-202ENST00000423271 ADGRL3Q9HAR2 1447 aa22.59■■□□□ 1.21
USB1-202ENST00000423271 IFT172Q9UG01 1749 aa22.59■■□□□ 1.21
USB1-202ENST00000423271 PTCH1Q13635 1447 aa22.57■■□□□ 1.2
USB1-202ENST00000423271 AHDC1Q5TGY3 1603 aaPredicted RBP22.57■■□□□ 1.2
USB1-202ENST00000423271 RGL3Q3MIN7 710 aa22.57■■□□□ 1.2
USB1-202ENST00000423271 MST1RQ04912 1400 aa22.57■■□□□ 1.2
USB1-202ENST00000423271 ADGRF5Q8IZF2 1346 aa22.57■■□□□ 1.2
USB1-202ENST00000423271 ROBO2Q9HCK4 1378 aa22.56■■□□□ 1.2
USB1-202ENST00000423271 BRINP3Q76B58 766 aa22.55■■□□□ 1.2
USB1-202ENST00000423271 JCADQ9P266 1359 aa22.54■■□□□ 1.2
USB1-202ENST00000423271 PRAG1Q86YV5 1406 aa22.54■■□□□ 1.2
USB1-202ENST00000423271 ACIN1Q9UKV3 1341 aaKnown RBP22.54■■□□□ 1.2
USB1-202ENST00000423271 ASXL1Q8IXJ9 1541 aa22.53■■□□□ 1.2
USB1-202ENST00000423271 RGS17Q9UGC6 210 aaPredicted RBP22.53■■□□□ 1.2
USB1-202ENST00000423271 ANKRD30BQ9BXX2 1392 aa22.51■■□□□ 1.19
USB1-202ENST00000423271 NHSL1Q5SYE7 1610 aa22.49■■□□□ 1.19
USB1-202ENST00000423271 PIK3C2GO75747 1445 aa22.48■■□□□ 1.19
USB1-202ENST00000423271 LRP6O75581 1613 aa22.46■■□□□ 1.19
USB1-202ENST00000423271 SHPRHQ149N8 1683 aa22.46■■□□□ 1.19
USB1-202ENST00000423271 C1orf167Q5SNV9 1468 aa22.45■■□□□ 1.18
USB1-202ENST00000423271 TECPR2O15040 1411 aa22.43■■□□□ 1.18
USB1-202ENST00000423271 DDX17Q92841 729 aaKnown RBP22.43■■□□□ 1.18
USB1-202ENST00000423271 LRPPRCP42704 1394 aaKnown RBP22.42■■□□□ 1.18
USB1-202ENST00000423271 TMEM132EQ6IEE7 984 aa22.42■■□□□ 1.18
USB1-202ENST00000423271 STK26Q9P289 416 aa22.42■■□□□ 1.18
USB1-202ENST00000423271 KNDC1Q76NI1 1749 aa22.42■■□□□ 1.18
USB1-202ENST00000423271 MYOM2P54296 1465 aa22.41■■□□□ 1.18
USB1-202ENST00000423271 NRXN1Q9ULB1 1477 aa22.41■■□□□ 1.18
USB1-202ENST00000423271 SPATA31A6Q5VVP1 1343 aa22.41■■□□□ 1.18
USB1-202ENST00000423271 POTEAQ6S8J7 498 aa22.41■■□□□ 1.18
USB1-202ENST00000423271 CDC42BPGQ6DT37 1551 aa22.4■■□□□ 1.18
USB1-202ENST00000423271 PLEKHH1Q9ULM0 1364 aa22.38■■□□□ 1.17
USB1-202ENST00000423271 WAPLQ7Z5K2 1190 aa22.38■■□□□ 1.17
USB1-202ENST00000423271 YTHDC2Q9H6S0 1430 aaKnown RBP22.38■■□□□ 1.17
USB1-202ENST00000423271 ABCC11Q96J66 1382 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms