RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 NUP155O75694 1391 aa16.89■□□□□ 0.29
SSBP3-206ENST00000420121 SPHKAPQ2M3C7 1700 aa16.88■□□□□ 0.29
SSBP3-206ENST00000420121 NAIPQ13075 1403 aa16.87■□□□□ 0.29
SSBP3-206ENST00000420121 NWD1Q149M9 1564 aa16.86■□□□□ 0.29
SSBP3-206ENST00000420121 RIMS2Q9UQ26 1411 aa16.85■□□□□ 0.29
SSBP3-206ENST00000420121 CHD2O14647 1828 aaKnown RBP16.84■□□□□ 0.29
SSBP3-206ENST00000420121 TOM1O60784 492 aa16.83■□□□□ 0.28
SSBP3-206ENST00000420121 PLEKHG1Q9ULL1 1385 aa16.82■□□□□ 0.28
SSBP3-206ENST00000420121 SLC26A8Q96RN1 970 aa16.82■□□□□ 0.28
SSBP3-206ENST00000420121 PIP4K2BP78356 416 aa16.81■□□□□ 0.28
SSBP3-206ENST00000420121 HFM1A2PYH4 1435 aa16.8■□□□□ 0.28
SSBP3-206ENST00000420121 HSPA1LP34931 641 aa16.8■□□□□ 0.28
SSBP3-206ENST00000420121 CLTCL1P53675 1640 aa16.79■□□□□ 0.28
SSBP3-206ENST00000420121 KCNA6P17658 529 aa16.79■□□□□ 0.28
SSBP3-206ENST00000420121 NKTRP30414 1462 aaKnown RBP16.79■□□□□ 0.28
SSBP3-206ENST00000420121 ADAMTS13Q76LX8 1427 aa16.79■□□□□ 0.28
SSBP3-206ENST00000420121 DISP3Q9P2K9 1392 aa16.78■□□□□ 0.28
SSBP3-206ENST00000420121 TRPM2O94759 1503 aa16.78■□□□□ 0.28
SSBP3-206ENST00000420121 NRXN3Q9Y4C0 1643 aa16.78■□□□□ 0.28
SSBP3-206ENST00000420121 SCAF1Q9H7N4 1312 aaKnown RBP16.77■□□□□ 0.28
SSBP3-206ENST00000420121 POTEDQ86YR6 584 aa16.77■□□□□ 0.28
SSBP3-206ENST00000420121 DIP2AQ14689 1571 aa16.77■□□□□ 0.27
SSBP3-206ENST00000420121 TMEM94Q12767 1356 aa16.77■□□□□ 0.27
SSBP3-206ENST00000420121 CHGAP10645 457 aaKnown RBP16.75■□□□□ 0.27
SSBP3-206ENST00000420121 KIF1BO60333 1816 aa16.75■□□□□ 0.27
SSBP3-206ENST00000420121 ILDR2Q71H61 639 aa16.74■□□□□ 0.27
SSBP3-206ENST00000420121 NUTM2DQ5VT03 806 aaPredicted RBP16.73■□□□□ 0.27
SSBP3-206ENST00000420121 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.73■□□□□ 0.27
SSBP3-206ENST00000420121 TBX22Q9Y458 520 aa16.73■□□□□ 0.27
SSBP3-206ENST00000420121 MED1Q15648 1581 aaPredicted RBP16.72■□□□□ 0.27
SSBP3-206ENST00000420121 NEXMIFQ5QGS0 1516 aa16.72■□□□□ 0.27
SSBP3-206ENST00000420121 PPP1R15AO75807 674 aaPredicted RBP16.72■□□□□ 0.27
SSBP3-206ENST00000420121 HDGFP51858 240 aaKnown RBP16.72■□□□□ 0.27
SSBP3-206ENST00000420121 RBM33Q96EV2 1170 aaKnown RBP16.72■□□□□ 0.27
SSBP3-206ENST00000420121 SETBP1Q9Y6X0 1596 aa16.72■□□□□ 0.27
SSBP3-206ENST00000420121 ROBO1Q9Y6N7 1651 aa16.7■□□□□ 0.26
SSBP3-206ENST00000420121 PROSER2Q86WR7 435 aaPredicted RBP16.7■□□□□ 0.26
SSBP3-206ENST00000420121 BCANQ96GW7 911 aa16.7■□□□□ 0.26
SSBP3-206ENST00000420121 XRN1Q8IZH2 1706 aaKnown RBP16.7■□□□□ 0.26
SSBP3-206ENST00000420121 PTPRUQ92729 1446 aa16.69■□□□□ 0.26
SSBP3-206ENST00000420121 PIK3R4Q99570 1358 aa16.68■□□□□ 0.26
SSBP3-206ENST00000420121 FAM135BQ49AJ0 1406 aa16.68■□□□□ 0.26
SSBP3-206ENST00000420121 SETD1AO15047 1707 aaKnown RBP16.67■□□□□ 0.26
SSBP3-206ENST00000420121 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.66■□□□□ 0.26
SSBP3-206ENST00000420121 PPLO60437 1756 aa16.65■□□□□ 0.26
SSBP3-206ENST00000420121 TRIM52Q96A61 297 aa16.65■□□□□ 0.26
SSBP3-206ENST00000420121 NCOA3Q9Y6Q9 1424 aa16.64■□□□□ 0.25
SSBP3-206ENST00000420121 MSH6P52701 1360 aa16.64■□□□□ 0.25
SSBP3-206ENST00000420121 SLC4A1APQ9BWU0 796 aaKnown RBP16.63■□□□□ 0.25
SSBP3-206ENST00000420121 METP08581 1390 aa16.62■□□□□ 0.25
SSBP3-206ENST00000420121 ZNF326Q5BKZ1 582 aaKnown RBP16.61■□□□□ 0.25
SSBP3-206ENST00000420121 IFT172Q9UG01 1749 aa16.6■□□□□ 0.25
SSBP3-206ENST00000420121 AMOTL2Q9Y2J4 779 aa16.6■□□□□ 0.25
SSBP3-206ENST00000420121 PHLPP1O60346 1717 aa16.59■□□□□ 0.25
SSBP3-206ENST00000420121 NALCNQ8IZF0 1738 aa16.57■□□□□ 0.24
SSBP3-206ENST00000420121 COL16A1Q07092 1604 aaPredicted RBP16.57■□□□□ 0.24
SSBP3-206ENST00000420121 SLAIN2Q9P270 581 aa16.57■□□□□ 0.24
SSBP3-206ENST00000420121 SPATA31E1Q6ZUB1 1445 aa16.55■□□□□ 0.24
SSBP3-206ENST00000420121 SOCS7O14512 581 aa16.55■□□□□ 0.24
SSBP3-206ENST00000420121 MPHOSPH9Q99550 1183 aa16.55■□□□□ 0.24
SSBP3-206ENST00000420121 C19orf44Q9H6X5 657 aa16.55■□□□□ 0.24
SSBP3-206ENST00000420121 SETD5Q9C0A6 1442 aa16.54■□□□□ 0.24
SSBP3-206ENST00000420121 DCCP43146 1447 aa16.53■□□□□ 0.24
SSBP3-206ENST00000420121 AHDC1Q5TGY3 1603 aaPredicted RBP16.53■□□□□ 0.24
SSBP3-206ENST00000420121 RPGRIP1LQ68CZ1 1315 aa16.53■□□□□ 0.24
SSBP3-206ENST00000420121 PRAG1Q86YV5 1406 aa16.53■□□□□ 0.24
SSBP3-206ENST00000420121 CCDC144AA2RUR9 1427 aa16.52■□□□□ 0.23
SSBP3-206ENST00000420121 VGFO15240 615 aaPredicted RBP16.51■□□□□ 0.23
SSBP3-206ENST00000420121 C14orf37Q86TY3 774 aa16.51■□□□□ 0.23
SSBP3-206ENST00000420121 CADPS2Q86UW7 1296 aa16.51■□□□□ 0.23
SSBP3-206ENST00000420121 ADGRL3Q9HAR2 1447 aa16.51■□□□□ 0.23
SSBP3-206ENST00000420121 NHSL1Q5SYE7 1610 aa16.5■□□□□ 0.23
SSBP3-206ENST00000420121 MST1RQ04912 1400 aa16.5■□□□□ 0.23
SSBP3-206ENST00000420121 PTCH1Q13635 1447 aa16.5■□□□□ 0.23
SSBP3-206ENST00000420121 RAB3GAP2Q9H2M9 1393 aa16.5■□□□□ 0.23
SSBP3-206ENST00000420121 RGS17Q9UGC6 210 aaPredicted RBP16.49■□□□□ 0.23
SSBP3-206ENST00000420121 ATF3P18847 181 aa16.48■□□□□ 0.23
SSBP3-206ENST00000420121 SHPRHQ149N8 1683 aa16.48■□□□□ 0.23
SSBP3-206ENST00000420121 ASXL1Q8IXJ9 1541 aa16.48■□□□□ 0.23
SSBP3-206ENST00000420121 ROBO2Q9HCK4 1378 aa16.48■□□□□ 0.23
SSBP3-206ENST00000420121 ADGRF5Q8IZF2 1346 aa16.47■□□□□ 0.23
SSBP3-206ENST00000420121 BRINP3Q76B58 766 aa16.46■□□□□ 0.23
SSBP3-206ENST00000420121 JCADQ9P266 1359 aa16.45■□□□□ 0.22
SSBP3-206ENST00000420121 KNDC1Q76NI1 1749 aa16.45■□□□□ 0.22
SSBP3-206ENST00000420121 ACIN1Q9UKV3 1341 aaKnown RBP16.45■□□□□ 0.22
SSBP3-206ENST00000420121 LAMC1P11047 1609 aa16.44■□□□□ 0.22
SSBP3-206ENST00000420121 PIK3C2GO75747 1445 aa16.44■□□□□ 0.22
SSBP3-206ENST00000420121 ANKRD30BQ9BXX2 1392 aa16.43■□□□□ 0.22
SSBP3-206ENST00000420121 RGL3Q3MIN7 710 aa16.43■□□□□ 0.22
SSBP3-206ENST00000420121 LRP6O75581 1613 aa16.43■□□□□ 0.22
SSBP3-206ENST00000420121 NRXN1Q9ULB1 1477 aa16.42■□□□□ 0.22
SSBP3-206ENST00000420121 TECPR2O15040 1411 aa16.41■□□□□ 0.22
SSBP3-206ENST00000420121 C1orf167Q5SNV9 1468 aa16.41■□□□□ 0.22
SSBP3-206ENST00000420121 CDC42BPGQ6DT37 1551 aa16.39■□□□□ 0.21
SSBP3-206ENST00000420121 MYOM2P54296 1465 aa16.39■□□□□ 0.21
SSBP3-206ENST00000420121 LRPPRCP42704 1394 aaKnown RBP16.38■□□□□ 0.21
SSBP3-206ENST00000420121 POTEAQ6S8J7 498 aa16.37■□□□□ 0.21
SSBP3-206ENST00000420121 DDX17Q92841 729 aaKnown RBP16.36■□□□□ 0.21
SSBP3-206ENST00000420121 SPATA31A6Q5VVP1 1343 aa16.36■□□□□ 0.21
SSBP3-206ENST00000420121 ABCC11Q96J66 1382 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms