RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 CHMP4CQ96CF2 233 aa13.79□□□□□ -0.2
PTCH1-205ENST00000418258 CCDC43Q96MW1 224 aaKnown RBP13.79□□□□□ -0.2
PTCH1-205ENST00000418258 GOLGA6L19H0YKK7 550 aa13.78□□□□□ -0.2
PTCH1-205ENST00000418258 KIF15Q9NS87 1388 aa13.78□□□□□ -0.2
PTCH1-205ENST00000418258 PANK3Q9H999 370 aa13.78□□□□□ -0.2
PTCH1-205ENST00000418258 GOLGA6L3A6NEY3 463 aa13.78□□□□□ -0.2
PTCH1-205ENST00000418258 PHLDB1Q86UU1 1377 aa13.78□□□□□ -0.2
PTCH1-205ENST00000418258 TPM1P09493 284 aa13.78□□□□□ -0.2
PTCH1-205ENST00000418258 PCMTD1Q96MG8 357 aaPredicted RBP13.77□□□□□ -0.2
PTCH1-205ENST00000418258 CPLX2Q6PUV4 134 aaKnown RBP13.77□□□□□ -0.2
PTCH1-205ENST00000418258 DDX58O95786 925 aaKnown RBP13.77□□□□□ -0.21
PTCH1-205ENST00000418258 RBM19Q9Y4C8 960 aaKnown RBP13.77□□□□□ -0.21
PTCH1-205ENST00000418258 RAPGEF2Q9Y4G8 1499 aa13.76□□□□□ -0.21
PTCH1-205ENST00000418258 MROH2BQ7Z745 1585 aa13.76□□□□□ -0.21
PTCH1-205ENST00000418258 TRDNQ13061 729 aa13.75□□□□□ -0.21
PTCH1-205ENST00000418258 ERICH2A1L162 156 aa13.75□□□□□ -0.21
PTCH1-205ENST00000418258 IFIT2P09913 472 aaKnown RBP13.75□□□□□ -0.21
PTCH1-205ENST00000418258 CCAR2Q8N163 923 aaKnown RBP13.75□□□□□ -0.21
PTCH1-205ENST00000418258 NFXL1Q6ZNB6 911 aa13.75□□□□□ -0.21
PTCH1-205ENST00000418258 OSCARQ8IYS5 282 aa13.75□□□□□ -0.21
PTCH1-205ENST00000418258 RUFY2Q8WXA3 655 aa13.74□□□□□ -0.21
PTCH1-205ENST00000418258 TNNT3P45378 269 aaPredicted RBP13.74□□□□□ -0.21
PTCH1-205ENST00000418258 ST20-MTHFSA0A0A6YYL1 179 aa13.73□□□□□ -0.21
PTCH1-205ENST00000418258 BECN2A8MW95 431 aa13.73□□□□□ -0.21
PTCH1-205ENST00000418258 ATP6V1DQ9Y5K8 247 aa13.73□□□□□ -0.21
PTCH1-205ENST00000418258 CPLX1O14810 134 aa13.73□□□□□ -0.21
PTCH1-205ENST00000418258 CCDC47Q96A33 483 aaKnown RBP13.73□□□□□ -0.21
PTCH1-205ENST00000418258 FAM69CQ0P6D2 419 aa13.73□□□□□ -0.21
PTCH1-205ENST00000418258 FYB1O15117 783 aa13.72□□□□□ -0.21
PTCH1-205ENST00000418258 ANO2Q9NQ90 1003 aa13.72□□□□□ -0.21
PTCH1-205ENST00000418258 MYBBP1AQ9BQG0 1328 aaKnown RBP13.72□□□□□ -0.21
PTCH1-205ENST00000418258 CCDC70Q6NSX1 233 aa13.71□□□□□ -0.21
PTCH1-205ENST00000418258 PDE3BQ13370 1112 aa13.71□□□□□ -0.21
PTCH1-205ENST00000418258 CCDC27Q2M243 656 aa13.71□□□□□ -0.21
PTCH1-205ENST00000418258 RAPGEF4Q8WZA2 1011 aa13.71□□□□□ -0.21
PTCH1-205ENST00000418258 G3BP1Q13283 466 aaKnown RBP eCLIP13.71□□□□□ -0.21
PTCH1-205ENST00000418258 ZKSCAN2Q63HK3 967 aa13.71□□□□□ -0.21
PTCH1-205ENST00000418258 PPP1R1BQ9UD71 204 aaPredicted RBP13.71□□□□□ -0.21
PTCH1-205ENST00000418258 ZKSCAN1P17029 563 aaPredicted RBP13.71□□□□□ -0.22
PTCH1-205ENST00000418258 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.7□□□□□ -0.22
PTCH1-205ENST00000418258 PTPRGP23470 1445 aa13.7□□□□□ -0.22
PTCH1-205ENST00000418258 HOOK1Q9UJC3 728 aaKnown RBP13.7□□□□□ -0.22
PTCH1-205ENST00000418258 FKBP5Q13451 457 aaPredicted RBP13.69□□□□□ -0.22
PTCH1-205ENST00000418258 ANKRD20A12PQ8NF67 263 aa13.69□□□□□ -0.22
PTCH1-205ENST00000418258 DIAPH1O60610 1272 aaKnown RBP13.69□□□□□ -0.22
PTCH1-205ENST00000418258 RIC3Q7Z5B4 369 aa13.69□□□□□ -0.22
PTCH1-205ENST00000418258 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.69□□□□□ -0.22
PTCH1-205ENST00000418258 E9PSI1 815 aa13.69□□□□□ -0.22
PTCH1-205ENST00000418258 TOP2AP11388 1531 aaKnown RBP13.68□□□□□ -0.22
PTCH1-205ENST00000418258 NUTM2GQ5VZR2 741 aa13.68□□□□□ -0.22
PTCH1-205ENST00000418258 PLIN1O60240 522 aa13.68□□□□□ -0.22
PTCH1-205ENST00000418258 AIMP1Q12904 312 aaKnown RBP13.68□□□□□ -0.22
PTCH1-205ENST00000418258 DDX11L8A8MPP1 907 aa13.68□□□□□ -0.22
PTCH1-205ENST00000418258 IPO7O95373 1038 aaKnown RBP13.68□□□□□ -0.22
PTCH1-205ENST00000418258 RIPK4P57078 832 aa13.68□□□□□ -0.22
PTCH1-205ENST00000418258 IKQ13123 557 aaPredicted RBP13.68□□□□□ -0.22
PTCH1-205ENST00000418258 CCAR1Q8IX12 1150 aaKnown RBP13.68□□□□□ -0.22
PTCH1-205ENST00000418258 ROCK1Q13464 1354 aa13.68□□□□□ -0.22
PTCH1-205ENST00000418258 RNF20Q5VTR2 975 aa13.67□□□□□ -0.22
PTCH1-205ENST00000418258 R3HCC1Q9Y3T6 440 aaKnown RBP13.67□□□□□ -0.22
PTCH1-205ENST00000418258 TSPYL4Q9UJ04 414 aa13.67□□□□□ -0.22
PTCH1-205ENST00000418258 NLRP2Q9NX02 1062 aa13.66□□□□□ -0.22
PTCH1-205ENST00000418258 FOSBP53539 338 aa13.66□□□□□ -0.22
PTCH1-205ENST00000418258 ODF2Q5BJF6 829 aa13.66□□□□□ -0.22
PTCH1-205ENST00000418258 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.66□□□□□ -0.226e-10■■■■■ 141.3
PTCH1-205ENST00000418258 REC8O95072 547 aa13.66□□□□□ -0.22
PTCH1-205ENST00000418258 SF3B2Q13435 895 aaKnown RBP13.66□□□□□ -0.22
PTCH1-205ENST00000418258 CENPQQ7L2Z9 268 aaPredicted RBP13.66□□□□□ -0.22
PTCH1-205ENST00000418258 NEUROD6Q96NK8 337 aa13.66□□□□□ -0.22
PTCH1-205ENST00000418258 MTMR7Q9Y216 660 aa13.65□□□□□ -0.22
PTCH1-205ENST00000418258 WASHC2AQ641Q2 1341 aa13.65□□□□□ -0.22
PTCH1-205ENST00000418258 DDX49Q9Y6V7 483 aaKnown RBP13.65□□□□□ -0.22
PTCH1-205ENST00000418258 IPO9Q96P70 1041 aaKnown RBP13.65□□□□□ -0.22
PTCH1-205ENST00000418258 CADPSQ9ULU8 1353 aa13.65□□□□□ -0.22
PTCH1-205ENST00000418258 HMOX1P09601 288 aa13.64□□□□□ -0.23
PTCH1-205ENST00000418258 CT47A1Q5JQC4 288 aaPredicted RBP13.64□□□□□ -0.23
PTCH1-205ENST00000418258 EPS15P42566 896 aa13.64□□□□□ -0.23
PTCH1-205ENST00000418258 PATL2C9JE40 543 aaKnown RBP13.63□□□□□ -0.23
PTCH1-205ENST00000418258 SAFBQ15424 915 aaKnown RBP eCLIP13.63□□□□□ -0.23
PTCH1-205ENST00000418258 COG6Q9Y2V7 657 aa13.63□□□□□ -0.23
PTCH1-205ENST00000418258 WASHC4Q2M389 1173 aa13.63□□□□□ -0.23
PTCH1-205ENST00000418258 FAM177BA6PVY3 158 aa13.63□□□□□ -0.23
PTCH1-205ENST00000418258 USP47Q96K76 1375 aa13.63□□□□□ -0.23
PTCH1-205ENST00000418258 RALYLQ86SE5 291 aaKnown RBP13.62□□□□□ -0.23
PTCH1-205ENST00000418258 BICD2Q8TD16 824 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 ZNF592Q92610 1267 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 DDX19BQ9UMR2 479 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 FANCD2Q9BXW9 1451 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 KIF6Q6ZMV9 814 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 NAP1L1P55209 391 aaKnown RBP13.62□□□□□ -0.23
PTCH1-205ENST00000418258 TMEM132AQ24JP5 1023 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 SETQ01105 290 aaPredicted RBP13.62□□□□□ -0.23
PTCH1-205ENST00000418258 MIA2Q96PC5 1412 aa13.62□□□□□ -0.23
PTCH1-205ENST00000418258 SLC4A3P48751 1232 aa13.61□□□□□ -0.23
PTCH1-205ENST00000418258 APAF1O14727 1248 aa13.61□□□□□ -0.23
PTCH1-205ENST00000418258 WWC2Q6AWC2 1192 aa13.61□□□□□ -0.23
PTCH1-205ENST00000418258 BRMS1Q9HCU9 246 aa13.61□□□□□ -0.23
PTCH1-205ENST00000418258 ERC2O15083 957 aa13.6□□□□□ -0.23
PTCH1-205ENST00000418258 STRN4Q9NRL3 753 aa13.6□□□□□ -0.23
PTCH1-205ENST00000418258 ABTB2Q8N961 1025 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms