RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 NUP155O75694 1391 aa23.13■■□□□ 1.29
UBXN4-203ENST00000416538 SLC52A1Q9NWF4 448 aa23.12■■□□□ 1.29
UBXN4-203ENST00000416538 NAIPQ13075 1403 aa23.11■■□□□ 1.29
UBXN4-203ENST00000416538 EID1Q9Y6B2 187 aa23.11■■□□□ 1.29
UBXN4-203ENST00000416538 POTEDQ86YR6 584 aa23.1■■□□□ 1.29
UBXN4-203ENST00000416538 CHD2O14647 1828 aaKnown RBP23.09■■□□□ 1.29
UBXN4-203ENST00000416538 RIMS2Q9UQ26 1411 aa23.08■■□□□ 1.29
UBXN4-203ENST00000416538 CLTCL1P53675 1640 aa23.07■■□□□ 1.28
UBXN4-203ENST00000416538 PIP4K2BP78356 416 aa23.06■■□□□ 1.28
UBXN4-203ENST00000416538 SLC26A8Q96RN1 970 aa23.04■■□□□ 1.28
UBXN4-203ENST00000416538 SCAF1Q9H7N4 1312 aaKnown RBP23.04■■□□□ 1.28
UBXN4-203ENST00000416538 DISP3Q9P2K9 1392 aa23.03■■□□□ 1.28
UBXN4-203ENST00000416538 PLEKHG1Q9ULL1 1385 aa23.03■■□□□ 1.28
UBXN4-203ENST00000416538 TOM1O60784 492 aa23.03■■□□□ 1.28
UBXN4-203ENST00000416538 NRXN3Q9Y4C0 1643 aa23.03■■□□□ 1.28
UBXN4-203ENST00000416538 HFM1A2PYH4 1435 aa23.02■■□□□ 1.28
UBXN4-203ENST00000416538 HSPA1LP34931 641 aa23.02■■□□□ 1.28
UBXN4-203ENST00000416538 NKTRP30414 1462 aaKnown RBP23.02■■□□□ 1.28
UBXN4-203ENST00000416538 TRPM2O94759 1503 aa23.01■■□□□ 1.27
UBXN4-203ENST00000416538 ADAMTS13Q76LX8 1427 aa23■■□□□ 1.27
UBXN4-203ENST00000416538 TMEM94Q12767 1356 aa22.99■■□□□ 1.27
UBXN4-203ENST00000416538 DIP2AQ14689 1571 aa22.98■■□□□ 1.27
UBXN4-203ENST00000416538 MED1Q15648 1581 aaPredicted RBP22.98■■□□□ 1.27
UBXN4-203ENST00000416538 KIF1BO60333 1816 aa22.97■■□□□ 1.27
UBXN4-203ENST00000416538 CHGAP10645 457 aaKnown RBP22.96■■□□□ 1.27
UBXN4-203ENST00000416538 KCNA6P17658 529 aa22.96■■□□□ 1.27
UBXN4-203ENST00000416538 NUTM2DQ5VT03 806 aaPredicted RBP22.96■■□□□ 1.27
UBXN4-203ENST00000416538 ILDR2Q71H61 639 aa22.95■■□□□ 1.26
UBXN4-203ENST00000416538 NEXMIFQ5QGS0 1516 aa22.94■■□□□ 1.26
UBXN4-203ENST00000416538 RBM33Q96EV2 1170 aaKnown RBP22.94■■□□□ 1.26
UBXN4-203ENST00000416538 ROBO1Q9Y6N7 1651 aa22.93■■□□□ 1.26
UBXN4-203ENST00000416538 SETBP1Q9Y6X0 1596 aa22.93■■□□□ 1.26
UBXN4-203ENST00000416538 XRN1Q8IZH2 1706 aaKnown RBP22.92■■□□□ 1.26
UBXN4-203ENST00000416538 PPP1R15AO75807 674 aaPredicted RBP22.92■■□□□ 1.26
UBXN4-203ENST00000416538 BCANQ96GW7 911 aa22.89■■□□□ 1.25
UBXN4-203ENST00000416538 SETD1AO15047 1707 aaKnown RBP22.88■■□□□ 1.25
UBXN4-203ENST00000416538 PTPRUQ92729 1446 aa22.88■■□□□ 1.25
UBXN4-203ENST00000416538 PROSER2Q86WR7 435 aaPredicted RBP22.87■■□□□ 1.25
UBXN4-203ENST00000416538 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.87■■□□□ 1.25
UBXN4-203ENST00000416538 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.85■■□□□ 1.25
UBXN4-203ENST00000416538 TBX22Q9Y458 520 aa22.85■■□□□ 1.25
UBXN4-203ENST00000416538 PPLO60437 1756 aa22.85■■□□□ 1.25
UBXN4-203ENST00000416538 HDGFP51858 240 aaKnown RBP22.83■■□□□ 1.25
UBXN4-203ENST00000416538 FAM135BQ49AJ0 1406 aa22.82■■□□□ 1.24
UBXN4-203ENST00000416538 PIK3R4Q99570 1358 aa22.82■■□□□ 1.24
UBXN4-203ENST00000416538 TRIM52Q96A61 297 aa22.8■■□□□ 1.24
UBXN4-203ENST00000416538 MSH6P52701 1360 aa22.79■■□□□ 1.24
UBXN4-203ENST00000416538 IFT172Q9UG01 1749 aa22.79■■□□□ 1.24
UBXN4-203ENST00000416538 PHLPP1O60346 1717 aa22.78■■□□□ 1.24
UBXN4-203ENST00000416538 NALCNQ8IZF0 1738 aa22.77■■□□□ 1.24
UBXN4-203ENST00000416538 METP08581 1390 aa22.76■■□□□ 1.23
UBXN4-203ENST00000416538 ZNF326Q5BKZ1 582 aaKnown RBP22.76■■□□□ 1.23
UBXN4-203ENST00000416538 SLC4A1APQ9BWU0 796 aaKnown RBP22.76■■□□□ 1.23
UBXN4-203ENST00000416538 COL16A1Q07092 1604 aaPredicted RBP22.75■■□□□ 1.23
UBXN4-203ENST00000416538 NCOA3Q9Y6Q9 1424 aa22.74■■□□□ 1.23
UBXN4-203ENST00000416538 AMOTL2Q9Y2J4 779 aa22.71■■□□□ 1.23
UBXN4-203ENST00000416538 AHDC1Q5TGY3 1603 aaPredicted RBP22.68■■□□□ 1.22
UBXN4-203ENST00000416538 SPATA31E1Q6ZUB1 1445 aa22.67■■□□□ 1.22
UBXN4-203ENST00000416538 SLAIN2Q9P270 581 aa22.67■■□□□ 1.22
UBXN4-203ENST00000416538 SOCS7O14512 581 aa22.65■■□□□ 1.22
UBXN4-203ENST00000416538 DCCP43146 1447 aa22.65■■□□□ 1.22
UBXN4-203ENST00000416538 SETD5Q9C0A6 1442 aa22.65■■□□□ 1.22
UBXN4-203ENST00000416538 ASXL1Q8IXJ9 1541 aa22.64■■□□□ 1.21
UBXN4-203ENST00000416538 MPHOSPH9Q99550 1183 aa22.64■■□□□ 1.21
UBXN4-203ENST00000416538 CCDC144AA2RUR9 1427 aa22.64■■□□□ 1.21
UBXN4-203ENST00000416538 ADGRL3Q9HAR2 1447 aa22.64■■□□□ 1.21
UBXN4-203ENST00000416538 NHSL1Q5SYE7 1610 aa22.64■■□□□ 1.21
UBXN4-203ENST00000416538 C14orf37Q86TY3 774 aa22.63■■□□□ 1.21
UBXN4-203ENST00000416538 PRAG1Q86YV5 1406 aa22.63■■□□□ 1.21
UBXN4-203ENST00000416538 C19orf44Q9H6X5 657 aa22.62■■□□□ 1.21
UBXN4-203ENST00000416538 MST1RQ04912 1400 aa22.62■■□□□ 1.21
UBXN4-203ENST00000416538 PTCH1Q13635 1447 aa22.62■■□□□ 1.21
UBXN4-203ENST00000416538 SHPRHQ149N8 1683 aa22.61■■□□□ 1.21
UBXN4-203ENST00000416538 RAB3GAP2Q9H2M9 1393 aa22.61■■□□□ 1.21
UBXN4-203ENST00000416538 ROBO2Q9HCK4 1378 aa22.59■■□□□ 1.21
UBXN4-203ENST00000416538 RPGRIP1LQ68CZ1 1315 aa22.58■■□□□ 1.21
UBXN4-203ENST00000416538 CADPS2Q86UW7 1296 aa22.58■■□□□ 1.21
UBXN4-203ENST00000416538 RGS17Q9UGC6 210 aaPredicted RBP22.58■■□□□ 1.21
UBXN4-203ENST00000416538 KNDC1Q76NI1 1749 aa22.57■■□□□ 1.2
UBXN4-203ENST00000416538 LRP6O75581 1613 aa22.57■■□□□ 1.2
UBXN4-203ENST00000416538 ADGRF5Q8IZF2 1346 aa22.57■■□□□ 1.2
UBXN4-203ENST00000416538 VGFO15240 615 aaPredicted RBP22.56■■□□□ 1.2
UBXN4-203ENST00000416538 ATF3P18847 181 aa22.55■■□□□ 1.2
UBXN4-203ENST00000416538 BRINP3Q76B58 766 aa22.55■■□□□ 1.2
UBXN4-203ENST00000416538 JCADQ9P266 1359 aa22.53■■□□□ 1.2
UBXN4-203ENST00000416538 PIK3C2GO75747 1445 aa22.53■■□□□ 1.2
UBXN4-203ENST00000416538 LAMC1P11047 1609 aa22.53■■□□□ 1.2
UBXN4-203ENST00000416538 RGL3Q3MIN7 710 aa22.51■■□□□ 1.19
UBXN4-203ENST00000416538 CDC42BPGQ6DT37 1551 aa22.5■■□□□ 1.19
UBXN4-203ENST00000416538 NRXN1Q9ULB1 1477 aa22.49■■□□□ 1.19
UBXN4-203ENST00000416538 ANKRD30BQ9BXX2 1392 aa22.49■■□□□ 1.19
UBXN4-203ENST00000416538 TECPR2O15040 1411 aa22.48■■□□□ 1.19
UBXN4-203ENST00000416538 MYOM2P54296 1465 aa22.47■■□□□ 1.19
UBXN4-203ENST00000416538 C1orf167Q5SNV9 1468 aa22.47■■□□□ 1.19
UBXN4-203ENST00000416538 DDX17Q92841 729 aaKnown RBP22.44■■□□□ 1.18
UBXN4-203ENST00000416538 FMN2Q9NZ56 1722 aa22.43■■□□□ 1.18
UBXN4-203ENST00000416538 LRPPRCP42704 1394 aaKnown RBP22.42■■□□□ 1.18
UBXN4-203ENST00000416538 PLEKHH1Q9ULM0 1364 aa22.42■■□□□ 1.18
UBXN4-203ENST00000416538 POTEAQ6S8J7 498 aa22.42■■□□□ 1.18
UBXN4-203ENST00000416538 ACIN1Q9UKV3 1341 aaKnown RBP22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms