RNA–Protein interactions for RNA: ENST00000416004.1

CHRNA1-206, Transcript of cholinergic receptor nicotinic alpha 1 subunit, humanhuman

TSL 2

Gene CHRNA1, Length 1,879 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1-206ENST00000416004 TRIM52Q96A61 297 aa13.5□□□□□ -0.25
CHRNA1-206ENST00000416004 TMEM2Q9UHN6 1383 aa13.49□□□□□ -0.25
CHRNA1-206ENST00000416004 PPP1R15AO75807 674 aaPredicted RBP13.49□□□□□ -0.25
CHRNA1-206ENST00000416004 ARHGAP23Q9P227 1491 aa13.49□□□□□ -0.25
CHRNA1-206ENST00000416004 CLSPNQ9HAW4 1339 aa13.48□□□□□ -0.25
CHRNA1-206ENST00000416004 ACIN1Q9UKV3 1341 aaKnown RBP13.48□□□□□ -0.25
CHRNA1-206ENST00000416004 SPHKAPQ2M3C7 1700 aa13.47□□□□□ -0.25
CHRNA1-206ENST00000416004 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.46□□□□□ -0.25
CHRNA1-206ENST00000416004 MYO5BQ9ULV0 1848 aa13.46□□□□□ -0.25
CHRNA1-206ENST00000416004 UBAP1LF5GYI3 381 aa13.45□□□□□ -0.26
CHRNA1-206ENST00000416004 LTKP29376 864 aa13.44□□□□□ -0.26
CHRNA1-206ENST00000416004 TOM1O60784 492 aa13.44□□□□□ -0.26
CHRNA1-206ENST00000416004 MPHOSPH9Q99550 1183 aa13.44□□□□□ -0.26
CHRNA1-206ENST00000416004 TMEM131LA2VDJ0 1609 aa13.43□□□□□ -0.26
CHRNA1-206ENST00000416004 SLC4A1APQ9BWU0 796 aaKnown RBP13.42□□□□□ -0.26
CHRNA1-206ENST00000416004 KIF1BO60333 1816 aa13.42□□□□□ -0.26
CHRNA1-206ENST00000416004 RIMS2Q9UQ26 1411 aa13.42□□□□□ -0.26
CHRNA1-206ENST00000416004 SCAF1Q9H7N4 1312 aaKnown RBP13.41□□□□□ -0.26
CHRNA1-206ENST00000416004 FOXD1Q16676 465 aa13.41□□□□□ -0.26
CHRNA1-206ENST00000416004 ZNF326Q5BKZ1 582 aaKnown RBP13.41□□□□□ -0.26
CHRNA1-206ENST00000416004 SIN3AQ96ST3 1273 aa13.41□□□□□ -0.26
CHRNA1-206ENST00000416004 PLEKHG1Q9ULL1 1385 aa13.39□□□□□ -0.27
CHRNA1-206ENST00000416004 TRPM2O94759 1503 aa13.38□□□□□ -0.27
CHRNA1-206ENST00000416004 SLC26A8Q96RN1 970 aa13.38□□□□□ -0.27
CHRNA1-206ENST00000416004 ZFYVE9O95405 1425 aa13.37□□□□□ -0.27
CHRNA1-206ENST00000416004 STRCP1A6NGW2 1772 aa13.37□□□□□ -0.27
CHRNA1-206ENST00000416004 KCNA6P17658 529 aa13.36□□□□□ -0.27
CHRNA1-206ENST00000416004 NEUROD1Q13562 356 aa13.36□□□□□ -0.27
CHRNA1-206ENST00000416004 DIP2AQ14689 1571 aa13.36□□□□□ -0.27
CHRNA1-206ENST00000416004 PIP4K2BP78356 416 aa13.36□□□□□ -0.27
CHRNA1-206ENST00000416004 LRRC7Q96NW7 1537 aa13.35□□□□□ -0.27
CHRNA1-206ENST00000416004 CLTCL1P53675 1640 aa13.34□□□□□ -0.27
CHRNA1-206ENST00000416004 ANKRD30BQ9BXX2 1392 aa13.34□□□□□ -0.27
CHRNA1-206ENST00000416004 PROSER2Q86WR7 435 aaPredicted RBP13.34□□□□□ -0.27
CHRNA1-206ENST00000416004 SENP3Q9H4L4 574 aaPredicted RBP13.34□□□□□ -0.27
CHRNA1-206ENST00000416004 NUTM2DQ5VT03 806 aaPredicted RBP13.33□□□□□ -0.27
CHRNA1-206ENST00000416004 TBX22Q9Y458 520 aa13.33□□□□□ -0.27
CHRNA1-206ENST00000416004 NKTRP30414 1462 aaKnown RBP13.33□□□□□ -0.28
CHRNA1-206ENST00000416004 CHD2O14647 1828 aaKnown RBP13.33□□□□□ -0.28
CHRNA1-206ENST00000416004 CCDC144AA2RUR9 1427 aa13.31□□□□□ -0.28
CHRNA1-206ENST00000416004 PIK3R4Q99570 1358 aa13.31□□□□□ -0.28
CHRNA1-206ENST00000416004 NWD1Q149M9 1564 aa13.31□□□□□ -0.28
CHRNA1-206ENST00000416004 C14orf37Q86TY3 774 aa13.31□□□□□ -0.28
CHRNA1-206ENST00000416004 VGFO15240 615 aaPredicted RBP13.3□□□□□ -0.28
CHRNA1-206ENST00000416004 RPGRIP1LQ68CZ1 1315 aa13.3□□□□□ -0.28
CHRNA1-206ENST00000416004 MSH6P52701 1360 aa13.29□□□□□ -0.28
CHRNA1-206ENST00000416004 XIRP1Q702N8 1843 aaKnown RBP13.29□□□□□ -0.28
CHRNA1-206ENST00000416004 TMEM94Q12767 1356 aa13.29□□□□□ -0.28
CHRNA1-206ENST00000416004 NEXMIFQ5QGS0 1516 aa13.27□□□□□ -0.29
CHRNA1-206ENST00000416004 SETBP1Q9Y6X0 1596 aa13.27□□□□□ -0.29
CHRNA1-206ENST00000416004 ADAMTS13Q76LX8 1427 aa13.26□□□□□ -0.29
CHRNA1-206ENST00000416004 NCOA3Q9Y6Q9 1424 aa13.26□□□□□ -0.29
CHRNA1-206ENST00000416004 TONSLQ96HA7 1378 aa13.25□□□□□ -0.29
CHRNA1-206ENST00000416004 PPLO60437 1756 aa13.25□□□□□ -0.29
CHRNA1-206ENST00000416004 TIMELESSQ9UNS1 1208 aa13.25□□□□□ -0.29
CHRNA1-206ENST00000416004 AMOTL2Q9Y2J4 779 aa13.24□□□□□ -0.29
CHRNA1-206ENST00000416004 ATF3P18847 181 aa13.23□□□□□ -0.29
CHRNA1-206ENST00000416004 HSPA1LP34931 641 aa13.23□□□□□ -0.29
CHRNA1-206ENST00000416004 DISP3Q9P2K9 1392 aa13.22□□□□□ -0.29
CHRNA1-206ENST00000416004 RGL3Q3MIN7 710 aa13.22□□□□□ -0.29
CHRNA1-206ENST00000416004 RBM33Q96EV2 1170 aaKnown RBP13.22□□□□□ -0.29
CHRNA1-206ENST00000416004 NRXN3Q9Y4C0 1643 aa13.22□□□□□ -0.29
CHRNA1-206ENST00000416004 CADPS2Q86UW7 1296 aa13.21□□□□□ -0.29
CHRNA1-206ENST00000416004 L3MBTL2Q969R5 705 aa13.21□□□□□ -0.29
CHRNA1-206ENST00000416004 C19orf44Q9H6X5 657 aa13.2□□□□□ -0.3
CHRNA1-206ENST00000416004 FAM135BQ49AJ0 1406 aa13.19□□□□□ -0.3
CHRNA1-206ENST00000416004 ALKQ9UM73 1620 aa13.19□□□□□ -0.3
CHRNA1-206ENST00000416004 XRN1Q8IZH2 1706 aaKnown RBP13.19□□□□□ -0.3
CHRNA1-206ENST00000416004 SLAIN2Q9P270 581 aa13.19□□□□□ -0.3
CHRNA1-206ENST00000416004 ROBO1Q9Y6N7 1651 aa13.18□□□□□ -0.3
CHRNA1-206ENST00000416004 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.18□□□□□ -0.3
CHRNA1-206ENST00000416004 IFT172Q9UG01 1749 aa13.17□□□□□ -0.3
CHRNA1-206ENST00000416004 METP08581 1390 aa13.17□□□□□ -0.3
CHRNA1-206ENST00000416004 PTPRUQ92729 1446 aa13.16□□□□□ -0.3
CHRNA1-206ENST00000416004 DCCP43146 1447 aa13.15□□□□□ -0.3
CHRNA1-206ENST00000416004 SPATA31E1Q6ZUB1 1445 aa13.15□□□□□ -0.3
CHRNA1-206ENST00000416004 PHF23Q9BUL5 403 aaPredicted RBP13.14□□□□□ -0.31
CHRNA1-206ENST00000416004 PHLPP1O60346 1717 aa13.14□□□□□ -0.31
CHRNA1-206ENST00000416004 SETD1AO15047 1707 aaKnown RBP13.14□□□□□ -0.31
CHRNA1-206ENST00000416004 LAMC1P11047 1609 aa13.14□□□□□ -0.31
CHRNA1-206ENST00000416004 PTCH1Q13635 1447 aa13.13□□□□□ -0.31
CHRNA1-206ENST00000416004 ADGRF5Q8IZF2 1346 aa13.12□□□□□ -0.31
CHRNA1-206ENST00000416004 ADGRL3Q9HAR2 1447 aa13.12□□□□□ -0.31
CHRNA1-206ENST00000416004 NBPF8Q3BBV2 869 aa13.12□□□□□ -0.31
CHRNA1-206ENST00000416004 STAC3Q96MF2 364 aa13.12□□□□□ -0.31
CHRNA1-206ENST00000416004 MED1Q15648 1581 aaPredicted RBP13.11□□□□□ -0.31
CHRNA1-206ENST00000416004 MYOM2P54296 1465 aa13.11□□□□□ -0.31
CHRNA1-206ENST00000416004 NALCNQ8IZF0 1738 aa13.1□□□□□ -0.31
CHRNA1-206ENST00000416004 ZNF316A6NFI3 1004 aaPredicted RBP13.1□□□□□ -0.31
CHRNA1-206ENST00000416004 PIK3C2GO75747 1445 aa13.09□□□□□ -0.31
CHRNA1-206ENST00000416004 STK26Q9P289 416 aa13.09□□□□□ -0.31
CHRNA1-206ENST00000416004 KNDC1Q76NI1 1749 aa13.08□□□□□ -0.32
CHRNA1-206ENST00000416004 DCAF11Q8TEB1 546 aa13.08□□□□□ -0.32
CHRNA1-206ENST00000416004 PRAG1Q86YV5 1406 aa13.08□□□□□ -0.32
CHRNA1-206ENST00000416004 LRPPRCP42704 1394 aaKnown RBP13.07□□□□□ -0.32
CHRNA1-206ENST00000416004 KDM2AQ9Y2K7 1162 aa13.07□□□□□ -0.32
CHRNA1-206ENST00000416004 ROBO2Q9HCK4 1378 aa13.06□□□□□ -0.32
CHRNA1-206ENST00000416004 JCADQ9P266 1359 aa13.06□□□□□ -0.32
CHRNA1-206ENST00000416004 C14orf93Q9H972 538 aaKnown RBP13.06□□□□□ -0.32
CHRNA1-206ENST00000416004 AHDC1Q5TGY3 1603 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms