RNA–Protein interactions for RNA: ENST00000415537.1

HLA-C-204, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 782 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-204ENST00000415537 RIMS2Q9UQ26 1411 aa37.76■■■■□ 3.63
HLA-C-204ENST00000415537 NAIPQ13075 1403 aa37.75■■■■□ 3.63
HLA-C-204ENST00000415537 ZFYVE9O95405 1425 aa37.74■■■■□ 3.63
HLA-C-204ENST00000415537 ABCF1Q8NE71 845 aaKnown RBP eCLIP37.71■■■■□ 3.63
HLA-C-204ENST00000415537 DISP3Q9P2K9 1392 aa37.7■■■■□ 3.63
HLA-C-204ENST00000415537 KCNA6P17658 529 aa37.7■■■■□ 3.63
HLA-C-204ENST00000415537 SENP3Q9H4L4 574 aaPredicted RBP37.7■■■■□ 3.63
HLA-C-204ENST00000415537 PLEKHG1Q9ULL1 1385 aa37.69■■■■□ 3.62
HLA-C-204ENST00000415537 SPHKAPQ2M3C7 1700 aa37.69■■■■□ 3.62
HLA-C-204ENST00000415537 XIRP1Q702N8 1843 aaKnown RBP37.66■■■■□ 3.62
HLA-C-204ENST00000415537 ALKQ9UM73 1620 aa37.66■■■■□ 3.62
HLA-C-204ENST00000415537 HSPA1LP34931 641 aa37.65■■■■□ 3.62
HLA-C-204ENST00000415537 HFM1A2PYH4 1435 aa37.64■■■■□ 3.62
HLA-C-204ENST00000415537 TRIM52Q96A61 297 aa37.62■■■■□ 3.61
HLA-C-204ENST00000415537 NUTM2DQ5VT03 806 aaPredicted RBP37.61■■■■□ 3.61
HLA-C-204ENST00000415537 PROSER2Q86WR7 435 aaPredicted RBP37.61■■■■□ 3.61
HLA-C-204ENST00000415537 TMEM94Q12767 1356 aa37.57■■■■□ 3.61
HLA-C-204ENST00000415537 NWD1Q149M9 1564 aa37.57■■■■□ 3.6
HLA-C-204ENST00000415537 CHD2O14647 1828 aaKnown RBP37.55■■■■□ 3.6
HLA-C-204ENST00000415537 TBX22Q9Y458 520 aa37.55■■■■□ 3.6
HLA-C-204ENST00000415537 NKTRP30414 1462 aaKnown RBP37.55■■■■□ 3.6
HLA-C-204ENST00000415537 ZNF326Q5BKZ1 582 aaKnown RBP37.53■■■■□ 3.6
HLA-C-204ENST00000415537 RBM33Q96EV2 1170 aaKnown RBP37.5■■■■□ 3.59
HLA-C-204ENST00000415537 TRPM2O94759 1503 aa37.49■■■■□ 3.59
HLA-C-204ENST00000415537 DIP2AQ14689 1571 aa37.48■■■■□ 3.59
HLA-C-204ENST00000415537 SLC4A1APQ9BWU0 796 aaKnown RBP37.48■■■■□ 3.59
HLA-C-204ENST00000415537 CLTCL1P53675 1640 aa37.47■■■■□ 3.59
HLA-C-204ENST00000415537 ADAMTS13Q76LX8 1427 aa37.46■■■■□ 3.59
HLA-C-204ENST00000415537 KIF1BO60333 1816 aa37.46■■■■□ 3.59
HLA-C-204ENST00000415537 MSH6P52701 1360 aa37.42■■■■□ 3.58
HLA-C-204ENST00000415537 PIK3R4Q99570 1358 aa37.42■■■■□ 3.58
HLA-C-204ENST00000415537 FAM135BQ49AJ0 1406 aa37.36■■■■□ 3.57
HLA-C-204ENST00000415537 ILDR2Q71H61 639 aa37.35■■■■□ 3.57
HLA-C-204ENST00000415537 C14orf37Q86TY3 774 aa37.33■■■■□ 3.57
HLA-C-204ENST00000415537 SETBP1Q9Y6X0 1596 aa37.33■■■■□ 3.57
HLA-C-204ENST00000415537 NCOA3Q9Y6Q9 1424 aa37.32■■■■□ 3.56
HLA-C-204ENST00000415537 NEXMIFQ5QGS0 1516 aa37.31■■■■□ 3.56
HLA-C-204ENST00000415537 MED1Q15648 1581 aaPredicted RBP37.31■■■■□ 3.56
HLA-C-204ENST00000415537 AMOTL2Q9Y2J4 779 aa37.31■■■■□ 3.56
HLA-C-204ENST00000415537 NRXN3Q9Y4C0 1643 aa37.31■■■■□ 3.56
HLA-C-204ENST00000415537 ROBO1Q9Y6N7 1651 aa37.28■■■■□ 3.56
HLA-C-204ENST00000415537 SLAIN2Q9P270 581 aa37.26■■■■□ 3.56
HLA-C-204ENST00000415537 FOXD1Q16676 465 aa37.25■■■■□ 3.55
HLA-C-204ENST00000415537 PTPRUQ92729 1446 aa37.25■■■■□ 3.55
HLA-C-204ENST00000415537 ACIN1Q9UKV3 1341 aaKnown RBP37.22■■■■□ 3.55
HLA-C-204ENST00000415537 VGFO15240 615 aaPredicted RBP37.22■■■■□ 3.55
HLA-C-204ENST00000415537 MPHOSPH9Q99550 1183 aa37.22■■■■□ 3.55
HLA-C-204ENST00000415537 RPGRIP1LQ68CZ1 1315 aa37.2■■■■□ 3.55
HLA-C-204ENST00000415537 C19orf44Q9H6X5 657 aa37.2■■■■□ 3.55
HLA-C-204ENST00000415537 SIPA1L2Q9P2F8 1722 aaPredicted RBP37.19■■■■□ 3.54
HLA-C-204ENST00000415537 METP08581 1390 aa37.18■■■■□ 3.54
HLA-C-204ENST00000415537 XRN1Q8IZH2 1706 aaKnown RBP37.17■■■■□ 3.54
HLA-C-204ENST00000415537 ATF3P18847 181 aa37.17■■■■□ 3.54
HLA-C-204ENST00000415537 CADPS2Q86UW7 1296 aa37.17■■■■□ 3.54
HLA-C-204ENST00000415537 SETD5Q9C0A6 1442 aa37.17■■■■□ 3.54
HLA-C-204ENST00000415537 PHF23Q9BUL5 403 aaPredicted RBP37.16■■■■□ 3.54
HLA-C-204ENST00000415537 CCDC144AA2RUR9 1427 aa37.15■■■■□ 3.54
HLA-C-204ENST00000415537 PPLO60437 1756 aa37.13■■■■□ 3.53
HLA-C-204ENST00000415537 SOCS7O14512 581 aa37.09■■■■□ 3.53
HLA-C-204ENST00000415537 PHLPP1O60346 1717 aa37.09■■■■□ 3.53
HLA-C-204ENST00000415537 RGL3Q3MIN7 710 aa37.04■■■■□ 3.52
HLA-C-204ENST00000415537 DCCP43146 1447 aa37.02■■■■□ 3.52
HLA-C-204ENST00000415537 SETD1AO15047 1707 aaKnown RBP37.02■■■■□ 3.52
HLA-C-204ENST00000415537 RAB3GAP2Q9H2M9 1393 aa37.02■■■■□ 3.52
HLA-C-204ENST00000415537 SPATA31E1Q6ZUB1 1445 aa36.97■■■■□ 3.51
HLA-C-204ENST00000415537 ADGRL3Q9HAR2 1447 aa36.94■■■■□ 3.5
HLA-C-204ENST00000415537 ANKRD30BQ9BXX2 1392 aa36.94■■■■□ 3.5
HLA-C-204ENST00000415537 IFT172Q9UG01 1749 aa36.93■■■■□ 3.5
HLA-C-204ENST00000415537 JCADQ9P266 1359 aa36.92■■■■□ 3.5
HLA-C-204ENST00000415537 ADGRF5Q8IZF2 1346 aa36.92■■■■□ 3.5
HLA-C-204ENST00000415537 NALCNQ8IZF0 1738 aa36.92■■■■□ 3.5
HLA-C-204ENST00000415537 PTCH1Q13635 1447 aa36.92■■■■□ 3.5
HLA-C-204ENST00000415537 COL16A1Q07092 1604 aaPredicted RBP36.92■■■■□ 3.5
HLA-C-204ENST00000415537 BRINP3Q76B58 766 aa36.91■■■■□ 3.5
HLA-C-204ENST00000415537 AHDC1Q5TGY3 1603 aaPredicted RBP36.89■■■■□ 3.5
HLA-C-204ENST00000415537 MST1RQ04912 1400 aa36.88■■■■□ 3.49
HLA-C-204ENST00000415537 ROBO2Q9HCK4 1378 aa36.87■■■■□ 3.49
HLA-C-204ENST00000415537 PRAG1Q86YV5 1406 aa36.84■■■■□ 3.49
HLA-C-204ENST00000415537 ASXL1Q8IXJ9 1541 aa36.83■■■■□ 3.49
HLA-C-204ENST00000415537 RGS17Q9UGC6 210 aaPredicted RBP36.8■■■■□ 3.48
HLA-C-204ENST00000415537 PIK3C2GO75747 1445 aa36.77■■■■□ 3.48
HLA-C-204ENST00000415537 HRCP23327 699 aa36.77■■■■□ 3.48
HLA-C-204ENST00000415537 STK26Q9P289 416 aa36.76■■■■□ 3.48
HLA-C-204ENST00000415537 SPATA31A6Q5VVP1 1343 aa36.76■■■■□ 3.47
HLA-C-204ENST00000415537 NHSL1Q5SYE7 1610 aa36.74■■■■□ 3.47
HLA-C-204ENST00000415537 SHPRHQ149N8 1683 aa36.74■■■■□ 3.47
HLA-C-204ENST00000415537 C1orf167Q5SNV9 1468 aa36.73■■■■□ 3.47
HLA-C-204ENST00000415537 TMEM132EQ6IEE7 984 aa36.72■■■■□ 3.47
HLA-C-204ENST00000415537 LRPPRCP42704 1394 aaKnown RBP36.7■■■■□ 3.47
HLA-C-204ENST00000415537 MEX3CQ5U5Q3 659 aaKnown RBP36.68■■■■□ 3.46
HLA-C-204ENST00000415537 LRRC59Q96AG4 307 aaKnown RBP36.68■■■■□ 3.46
HLA-C-204ENST00000415537 MYOM2P54296 1465 aa36.68■■■■□ 3.46
HLA-C-204ENST00000415537 TECPR2O15040 1411 aa36.68■■■■□ 3.46
HLA-C-204ENST00000415537 KNDC1Q76NI1 1749 aa36.67■■■■□ 3.46
HLA-C-204ENST00000415537 ABCC11Q96J66 1382 aa36.66■■■■□ 3.46
HLA-C-204ENST00000415537 DDX17Q92841 729 aaKnown RBP36.66■■■■□ 3.46
HLA-C-204ENST00000415537 C14orf93Q9H972 538 aaKnown RBP36.66■■■■□ 3.46
HLA-C-204ENST00000415537 WAPLQ7Z5K2 1190 aa36.65■■■■□ 3.46
HLA-C-204ENST00000415537 YTHDC2Q9H6S0 1430 aaKnown RBP36.64■■■■□ 3.46
HLA-C-204ENST00000415537 LAMC1P11047 1609 aa36.63■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms