RNA–Protein interactions for RNA: ENST00000412218.1

LINC01643-201, Transcript of long intergenic non-protein coding RNA 1643, humanhuman

TSL 5 BASIC

Gene LINC01643, Length 757 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01643-201ENST00000412218 PLEKHG1Q9ULL1 1385 aa15.37■□□□□ 0.05
LINC01643-201ENST00000412218 NWD1Q149M9 1564 aa15.37■□□□□ 0.05
LINC01643-201ENST00000412218 PIP4K2BP78356 416 aa15.36■□□□□ 0.05
LINC01643-201ENST00000412218 SLC26A8Q96RN1 970 aa15.36■□□□□ 0.05
LINC01643-201ENST00000412218 SPHKAPQ2M3C7 1700 aa15.35■□□□□ 0.05
LINC01643-201ENST00000412218 SCAF1Q9H7N4 1312 aaKnown RBP15.35■□□□□ 0.05
LINC01643-201ENST00000412218 NKTRP30414 1462 aaKnown RBP15.34■□□□□ 0.05
LINC01643-201ENST00000412218 CHGAP10645 457 aaKnown RBP15.34■□□□□ 0.05
LINC01643-201ENST00000412218 KCNA6P17658 529 aa15.34■□□□□ 0.05
LINC01643-201ENST00000412218 TRPM2O94759 1503 aa15.33■□□□□ 0.05
LINC01643-201ENST00000412218 PPP1R15AO75807 674 aaPredicted RBP15.33■□□□□ 0.04
LINC01643-201ENST00000412218 HDGFP51858 240 aaKnown RBP15.33■□□□□ 0.04
LINC01643-201ENST00000412218 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.33■□□□□ 0.04
LINC01643-201ENST00000412218 XIRP1Q702N8 1843 aaKnown RBP15.33■□□□□ 0.04
LINC01643-201ENST00000412218 HSPA1LP34931 641 aa15.32■□□□□ 0.04
LINC01643-201ENST00000412218 BCANQ96GW7 911 aa15.31■□□□□ 0.04
LINC01643-201ENST00000412218 TMEM94Q12767 1356 aa15.31■□□□□ 0.04
LINC01643-201ENST00000412218 DISP3Q9P2K9 1392 aa15.31■□□□□ 0.04
LINC01643-201ENST00000412218 ADAMTS13Q76LX8 1427 aa15.31■□□□□ 0.04
LINC01643-201ENST00000412218 DIP2AQ14689 1571 aa15.31■□□□□ 0.04
LINC01643-201ENST00000412218 CLTCL1P53675 1640 aa15.3■□□□□ 0.04
LINC01643-201ENST00000412218 NUTM2DQ5VT03 806 aaPredicted RBP15.29■□□□□ 0.04
LINC01643-201ENST00000412218 TBX22Q9Y458 520 aa15.28■□□□□ 0.04
LINC01643-201ENST00000412218 PROSER2Q86WR7 435 aaPredicted RBP15.27■□□□□ 0.04
LINC01643-201ENST00000412218 TRIM52Q96A61 297 aa15.27■□□□□ 0.04
LINC01643-201ENST00000412218 SETBP1Q9Y6X0 1596 aa15.26■□□□□ 0.03
LINC01643-201ENST00000412218 CHD2O14647 1828 aaKnown RBP15.26■□□□□ 0.03
LINC01643-201ENST00000412218 PIK3R4Q99570 1358 aa15.25■□□□□ 0.03
LINC01643-201ENST00000412218 NRXN3Q9Y4C0 1643 aa15.25■□□□□ 0.03
LINC01643-201ENST00000412218 RBM33Q96EV2 1170 aaKnown RBP15.25■□□□□ 0.03
LINC01643-201ENST00000412218 NEXMIFQ5QGS0 1516 aa15.25■□□□□ 0.03
LINC01643-201ENST00000412218 ZNF326Q5BKZ1 582 aaKnown RBP15.23■□□□□ 0.03
LINC01643-201ENST00000412218 SLC4A1APQ9BWU0 796 aaKnown RBP15.23■□□□□ 0.03
LINC01643-201ENST00000412218 FAM135BQ49AJ0 1406 aa15.23■□□□□ 0.03
LINC01643-201ENST00000412218 MSH6P52701 1360 aa15.23■□□□□ 0.03
LINC01643-201ENST00000412218 NCOA3Q9Y6Q9 1424 aa15.22■□□□□ 0.03
LINC01643-201ENST00000412218 MED1Q15648 1581 aaPredicted RBP15.22■□□□□ 0.03
LINC01643-201ENST00000412218 PTPRUQ92729 1446 aa15.21■□□□□ 0.03
LINC01643-201ENST00000412218 XRN1Q8IZH2 1706 aaKnown RBP15.2■□□□□ 0.02
LINC01643-201ENST00000412218 KIF1BO60333 1816 aa15.2■□□□□ 0.02
LINC01643-201ENST00000412218 ILDR2Q71H61 639 aa15.19■□□□□ 0.02
LINC01643-201ENST00000412218 ROBO1Q9Y6N7 1651 aa15.19■□□□□ 0.02
LINC01643-201ENST00000412218 METP08581 1390 aa15.17■□□□□ 0.02
LINC01643-201ENST00000412218 AMOTL2Q9Y2J4 779 aa15.17■□□□□ 0.02
LINC01643-201ENST00000412218 FOXD1Q16676 465 aa15.16■□□□□ 0.02
LINC01643-201ENST00000412218 SETD5Q9C0A6 1442 aa15.16■□□□□ 0.02
LINC01643-201ENST00000412218 TRIM26Q12899 539 aaPredicted RBP15.15■□□□□ 0.02
LINC01643-201ENST00000412218 MPHOSPH9Q99550 1183 aa15.15■□□□□ 0.02
LINC01643-201ENST00000412218 RPGRIP1LQ68CZ1 1315 aa15.15■□□□□ 0.02
LINC01643-201ENST00000412218 SLAIN2Q9P270 581 aa15.14■□□□□ 0.01
LINC01643-201ENST00000412218 CCDC144AA2RUR9 1427 aa15.14■□□□□ 0.01
LINC01643-201ENST00000412218 C14orf37Q86TY3 774 aa15.13■□□□□ 0.01
LINC01643-201ENST00000412218 PCGF6Q9BYE7 350 aa15.13■□□□□ 0.01
LINC01643-201ENST00000412218 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.13■□□□□ 0.01
LINC01643-201ENST00000412218 ACIN1Q9UKV3 1341 aaKnown RBP15.13■□□□□ 0.01
LINC01643-201ENST00000412218 SETD1AO15047 1707 aaKnown RBP15.12■□□□□ 0.01
LINC01643-201ENST00000412218 DCCP43146 1447 aa15.12■□□□□ 0.01
LINC01643-201ENST00000412218 SPATA31E1Q6ZUB1 1445 aa15.12■□□□□ 0.01
LINC01643-201ENST00000412218 PPLO60437 1756 aa15.12■□□□□ 0.01
LINC01643-201ENST00000412218 VGFO15240 615 aaPredicted RBP15.12■□□□□ 0.01
LINC01643-201ENST00000412218 C19orf44Q9H6X5 657 aa15.12■□□□□ 0.01
LINC01643-201ENST00000412218 CADPS2Q86UW7 1296 aa15.11■□□□□ 0.01
LINC01643-201ENST00000412218 RAB3GAP2Q9H2M9 1393 aa15.11■□□□□ 0.01
LINC01643-201ENST00000412218 PTCH1Q13635 1447 aa15.09■□□□□ 0.01
LINC01643-201ENST00000412218 PRAG1Q86YV5 1406 aa15.09■□□□□ 0.01
LINC01643-201ENST00000412218 ATF3P18847 181 aa15.09■□□□□ 0.01
LINC01643-201ENST00000412218 PHLPP1O60346 1717 aa15.08■□□□□ 0
LINC01643-201ENST00000412218 ADGRL3Q9HAR2 1447 aa15.08■□□□□ 0
LINC01643-201ENST00000412218 COL16A1Q07092 1604 aaPredicted RBP15.07■□□□□ 0
LINC01643-201ENST00000412218 IFT172Q9UG01 1749 aa15.07■□□□□ 0
LINC01643-201ENST00000412218 AHDC1Q5TGY3 1603 aaPredicted RBP15.06■□□□□ 0
LINC01643-201ENST00000412218 NALCNQ8IZF0 1738 aa15.06■□□□□ 0
LINC01643-201ENST00000412218 SOCS7O14512 581 aa15.06■□□□□ 0
LINC01643-201ENST00000412218 MST1RQ04912 1400 aa15.06■□□□□ 0
LINC01643-201ENST00000412218 ADGRF5Q8IZF2 1346 aa15.05■□□□□ -0
LINC01643-201ENST00000412218 ANKRD30BQ9BXX2 1392 aa15.05■□□□□ -0
LINC01643-201ENST00000412218 ROBO2Q9HCK4 1378 aa15.05■□□□□ -0
LINC01643-201ENST00000412218 ASXL1Q8IXJ9 1541 aa15.04■□□□□ -0
LINC01643-201ENST00000412218 RGL3Q3MIN7 710 aa15.04■□□□□ -0
LINC01643-201ENST00000412218 PIK3C2GO75747 1445 aa15.03■□□□□ -0
LINC01643-201ENST00000412218 JCADQ9P266 1359 aa15.03■□□□□ -0
LINC01643-201ENST00000412218 BRINP3Q76B58 766 aa15.03■□□□□ -0
LINC01643-201ENST00000412218 MYOM2P54296 1465 aa15.01□□□□□ -0.01
LINC01643-201ENST00000412218 NRXN1Q9ULB1 1477 aa15□□□□□ -0.01
LINC01643-201ENST00000412218 TECPR2O15040 1411 aa15□□□□□ -0.01
LINC01643-201ENST00000412218 RGS17Q9UGC6 210 aaPredicted RBP14.99□□□□□ -0.01
LINC01643-201ENST00000412218 NHSL1Q5SYE7 1610 aa14.99□□□□□ -0.01
LINC01643-201ENST00000412218 SHPRHQ149N8 1683 aa14.98□□□□□ -0.01
LINC01643-201ENST00000412218 C1orf167Q5SNV9 1468 aa14.98□□□□□ -0.01
LINC01643-201ENST00000412218 HRCP23327 699 aa14.98□□□□□ -0.01
LINC01643-201ENST00000412218 LRPPRCP42704 1394 aaKnown RBP14.98□□□□□ -0.01
LINC01643-201ENST00000412218 CDC42BPGQ6DT37 1551 aa14.97□□□□□ -0.01
LINC01643-201ENST00000412218 KNDC1Q76NI1 1749 aa14.97□□□□□ -0.01
LINC01643-201ENST00000412218 LRP6O75581 1613 aa14.96□□□□□ -0.01
LINC01643-201ENST00000412218 LAMC1P11047 1609 aa14.95□□□□□ -0.02
LINC01643-201ENST00000412218 SPATA31A6Q5VVP1 1343 aa14.95□□□□□ -0.02
LINC01643-201ENST00000412218 ABCC11Q96J66 1382 aa14.95□□□□□ -0.02
LINC01643-201ENST00000412218 YTHDC2Q9H6S0 1430 aaKnown RBP14.94□□□□□ -0.02
LINC01643-201ENST00000412218 TMEM132EQ6IEE7 984 aa14.93□□□□□ -0.02
LINC01643-201ENST00000412218 C14orf93Q9H972 538 aaKnown RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms