RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 TMUB1Q9BVT8 246 aa8.98□□□□□ -0.97
CLK1-202ENST00000409403 BCL2L12Q9HB09 334 aa8.98□□□□□ -0.97
CLK1-202ENST00000409403 ADGRG1Q9Y653 693 aa8.98□□□□□ -0.97
CLK1-202ENST00000409403 MS4A1P11836 297 aa8.97□□□□□ -0.97
CLK1-202ENST00000409403 PXYLP1Q8TE99 480 aa8.97□□□□□ -0.97
CLK1-202ENST00000409403 CDCA7LQ96GN5 454 aa8.97□□□□□ -0.97
CLK1-202ENST00000409403 ZNF608Q9ULD9 1512 aaPredicted RBP8.97□□□□□ -0.97
CLK1-202ENST00000409403 FAM205CA6NFA0 338 aa8.95□□□□□ -0.98
CLK1-202ENST00000409403 PTPREP23469 700 aa8.95□□□□□ -0.98
CLK1-202ENST00000409403 POTEB3A0JP26 581 aa8.94□□□□□ -0.98
CLK1-202ENST00000409403 COL9A1P20849 921 aa8.94□□□□□ -0.98
CLK1-202ENST00000409403 POTEBQ6S5H4 581 aa8.94□□□□□ -0.98
CLK1-202ENST00000409403 RBM46Q8TBY0 533 aaKnown RBP8.94□□□□□ -0.98
CLK1-202ENST00000409403 HS3ST6Q96QI5 342 aa8.94□□□□□ -0.98
CLK1-202ENST00000409403 PPP1R3GB7ZBB8 358 aa8.94□□□□□ -0.98
CLK1-202ENST00000409403 SSTR3P32745 418 aaPredicted RBP8.94□□□□□ -0.98
CLK1-202ENST00000409403 GOPCQ9HD26 462 aa8.94□□□□□ -0.98
CLK1-202ENST00000409403 EIF4G3O43432 1585 aaKnown RBP8.93□□□□□ -0.98
CLK1-202ENST00000409403 SPATA31D1Q6ZQQ2 1576 aa8.93□□□□□ -0.98
CLK1-202ENST00000409403 URB2Q14146 1524 aaKnown RBP8.92□□□□□ -0.98
CLK1-202ENST00000409403 NLRP7Q8WX94 980 aa8.92□□□□□ -0.98
CLK1-202ENST00000409403 FAM217BQ9NTX9 383 aaPredicted RBP8.92□□□□□ -0.98
CLK1-202ENST00000409403 SYNJ2O15056 1496 aa8.92□□□□□ -0.98
CLK1-202ENST00000409403 FAM198AQ9UFP1 575 aa8.91□□□□□ -0.98
CLK1-202ENST00000409403 CADPSQ9ULU8 1353 aa8.9□□□□□ -0.98
CLK1-202ENST00000409403 TSKSQ9UJT2 592 aa8.9□□□□□ -0.98
CLK1-202ENST00000409403 CLASP1Q7Z460 1538 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.88□□□□□ -0.99
CLK1-202ENST00000409403 KCNH8Q96L42 1107 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 BEGAINQ9BUH8 593 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 ADGRL1O94910 1474 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 FANCD2Q9BXW9 1451 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 ERBB3P21860 1342 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 TRIM6-TRIM34B2RNG4 842 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 NBPF26B4DH59 902 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 SH3D19Q5HYK7 790 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 PCMTD1Q96MG8 357 aaPredicted RBP8.88□□□□□ -0.99
CLK1-202ENST00000409403 KCNK17Q96T54 332 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 EYA1Q99502 592 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 RSPH6AQ9H0K4 717 aa8.88□□□□□ -0.99
CLK1-202ENST00000409403 KDM6BO15054 1643 aa8.87□□□□□ -0.99
CLK1-202ENST00000409403 RCCD1A6NED2 376 aa8.87□□□□□ -0.99
CLK1-202ENST00000409403 PACS2Q86VP3 889 aa8.87□□□□□ -0.99
CLK1-202ENST00000409403 KRTAP3-3Q9BYR6 98 aa8.87□□□□□ -0.99
CLK1-202ENST00000409403 KRTAP3-2Q9BYR7 98 aa8.87□□□□□ -0.99
CLK1-202ENST00000409403 HRCP23327 699 aa8.86□□□□□ -0.99
CLK1-202ENST00000409403 NUDT18Q6ZVK8 323 aa8.86□□□□□ -0.99
CLK1-202ENST00000409403 SPNS2Q8IVW8 549 aa8.85□□□□□ -0.99
CLK1-202ENST00000409403 TATDN2Q93075 761 aa8.85□□□□□ -0.99
CLK1-202ENST00000409403 PNMA3Q9UL41 463 aa8.85□□□□□ -0.99
CLK1-202ENST00000409403 ONECUT3O60422 494 aaPredicted RBP8.84□□□□□ -0.99
CLK1-202ENST00000409403 DNAJB2P25686 324 aa8.84□□□□□ -0.99
CLK1-202ENST00000409403 SKIV2LQ15477 1246 aaKnown RBP8.84□□□□□ -0.99
CLK1-202ENST00000409403 PROX2Q3B8N5 592 aa8.84□□□□□ -0.99
CLK1-202ENST00000409403 VARS2Q5ST30 1063 aaKnown RBP8.84□□□□□ -0.99
CLK1-202ENST00000409403 C3orf80F5H4A9 247 aa8.83□□□□□ -1
CLK1-202ENST00000409403 MMRN1Q13201 1228 aa8.83□□□□□ -1
CLK1-202ENST00000409403 SULF1Q8IWU6 871 aa8.81□□□□□ -1
CLK1-202ENST00000409403 ZBED2Q9BTP6 218 aa8.81□□□□□ -1
CLK1-202ENST00000409403 TMEM134Q9H6X4 195 aa8.81□□□□□ -1
CLK1-202ENST00000409403 PEG3Q9GZU2 1588 aa8.81□□□□□ -1
CLK1-202ENST00000409403 GAPVD1Q14C86 1478 aa8.81□□□□□ -1
CLK1-202ENST00000409403 DIXDC1Q155Q3 683 aa8.81□□□□□ -1
CLK1-202ENST00000409403 IFT140Q96RY7 1462 aa8.8□□□□□ -1
CLK1-202ENST00000409403 PSEN2P49810 448 aa8.8□□□□□ -1
CLK1-202ENST00000409403 FLIIQ13045 1269 aa8.8□□□□□ -1
CLK1-202ENST00000409403 MYSM1Q5VVJ2 828 aa8.8□□□□□ -1
CLK1-202ENST00000409403 SMAPO00193 183 aa8.79□□□□□ -1
CLK1-202ENST00000409403 ARHGAP33O14559 1287 aa8.79□□□□□ -1
CLK1-202ENST00000409403 CD46P15529 392 aa8.79□□□□□ -1
CLK1-202ENST00000409403 TBC1D2Q9BYX2 928 aa8.79□□□□□ -1
CLK1-202ENST00000409403 POLR3EQ9NVU0 708 aa8.79□□□□□ -1
CLK1-202ENST00000409403 KIAA1468Q9P260 1216 aa8.79□□□□□ -1
CLK1-202ENST00000409403 ATP1B4Q9UN42 357 aaPredicted RBP8.78□□□□□ -1
CLK1-202ENST00000409403 TSPOAP1O95153 1857 aa8.78□□□□□ -1
CLK1-202ENST00000409403 DDX11L8A8MPP1 907 aa8.78□□□□□ -1
CLK1-202ENST00000409403 CLK2P49760 499 aaKnown RBP8.77□□□□□ -1.01
CLK1-202ENST00000409403 PROCA1Q8NCQ7 364 aaPredicted RBP8.77□□□□□ -1.01
CLK1-202ENST00000409403 SLC4A5Q9BY07 1137 aa8.77□□□□□ -1.01
CLK1-202ENST00000409403 ZMYND15Q9H091 742 aa8.77□□□□□ -1.01
CLK1-202ENST00000409403 PBX2P40425 430 aa8.76□□□□□ -1.01
CLK1-202ENST00000409403 POTEEQ6S8J3 1075 aa8.76□□□□□ -1.01
CLK1-202ENST00000409403 RABGEF1Q9UJ41 708 aa8.76□□□□□ -1.01
CLK1-202ENST00000409403 ZNF687Q8N1G0 1237 aa8.75□□□□□ -1.01
CLK1-202ENST00000409403 SPIRE2Q8WWL2 714 aa8.75□□□□□ -1.01
CLK1-202ENST00000409403 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.75□□□□□ -1.01
CLK1-202ENST00000409403 NUTM1Q86Y26 1132 aa8.75□□□□□ -1.01
CLK1-202ENST00000409403 AXIN2Q9Y2T1 843 aa8.75□□□□□ -1.01
CLK1-202ENST00000409403 SYNJ1O43426 1573 aa8.74□□□□□ -1.01
CLK1-202ENST00000409403 DMRTA1Q5VZB9 504 aa8.74□□□□□ -1.01
CLK1-202ENST00000409403 SUPT5HO00267 1087 aaKnown RBP8.73□□□□□ -1.01
CLK1-202ENST00000409403 RDH13Q8NBN7 331 aa8.73□□□□□ -1.01
CLK1-202ENST00000409403 RSPH4AQ5TD94 716 aa8.72□□□□□ -1.01
CLK1-202ENST00000409403 RIC3Q7Z5B4 369 aa8.72□□□□□ -1.01
CLK1-202ENST00000409403 SEPT9Q9UHD8 586 aaPredicted RBP8.72□□□□□ -1.01
CLK1-202ENST00000409403 AQRO60306 1485 aaKnown RBP eCLIP8.72□□□□□ -1.019e-8■■■□□ 15.7
CLK1-202ENST00000409403 LIMD1Q9UGP4 676 aa8.72□□□□□ -1.01
CLK1-202ENST00000409403 HDGFP51858 240 aaKnown RBP8.71□□□□□ -1.02
CLK1-202ENST00000409403 FAM98CQ17RN3 349 aaKnown RBP8.71□□□□□ -1.02
CLK1-202ENST00000409403 VPS9D1Q9Y2B5 631 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 135.3 ms