RNA–Protein interactions for RNA: ENST00000408314.1

SNORD88A-201, Transcript of small nucleolar RNA, C/D box 88A, humanhuman

BASIC

Gene SNORD88A, Length 91 nt, Biotype snoRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNORD88A-201ENST00000408314 SPHKAPQ2M3C7 1700 aa13.67□□□□□ -0.22
SNORD88A-201ENST00000408314 SCAF1Q9H7N4 1312 aaKnown RBP13.67□□□□□ -0.22
SNORD88A-201ENST00000408314 CHGAP10645 457 aaKnown RBP13.67□□□□□ -0.22
SNORD88A-201ENST00000408314 NKTRP30414 1462 aaKnown RBP13.67□□□□□ -0.22
SNORD88A-201ENST00000408314 ACIN1Q9UKV3 1341 aaKnown RBP13.66□□□□□ -0.22
SNORD88A-201ENST00000408314 STRCP1A6NGW2 1772 aa13.66□□□□□ -0.22
SNORD88A-201ENST00000408314 KCNA6P17658 529 aa13.65□□□□□ -0.22
SNORD88A-201ENST00000408314 DIP2AQ14689 1571 aa13.65□□□□□ -0.22
SNORD88A-201ENST00000408314 NWD1Q149M9 1564 aa13.65□□□□□ -0.22
SNORD88A-201ENST00000408314 MYO5BQ9ULV0 1848 aa13.64□□□□□ -0.23
SNORD88A-201ENST00000408314 PIP4K2BP78356 416 aa13.64□□□□□ -0.23
SNORD88A-201ENST00000408314 SLC26A8Q96RN1 970 aa13.63□□□□□ -0.23
SNORD88A-201ENST00000408314 TRPM2O94759 1503 aa13.63□□□□□ -0.23
SNORD88A-201ENST00000408314 PIK3R4Q99570 1358 aa13.62□□□□□ -0.23
SNORD88A-201ENST00000408314 TRIM52Q96A61 297 aa13.62□□□□□ -0.23
SNORD88A-201ENST00000408314 DISP3Q9P2K9 1392 aa13.61□□□□□ -0.23
SNORD88A-201ENST00000408314 TBX22Q9Y458 520 aa13.61□□□□□ -0.23
SNORD88A-201ENST00000408314 TMEM94Q12767 1356 aa13.6□□□□□ -0.23
SNORD88A-201ENST00000408314 PROSER2Q86WR7 435 aaPredicted RBP13.6□□□□□ -0.23
SNORD88A-201ENST00000408314 ZNF326Q5BKZ1 582 aaKnown RBP13.59□□□□□ -0.23
SNORD88A-201ENST00000408314 NCOA3Q9Y6Q9 1424 aa13.58□□□□□ -0.24
SNORD88A-201ENST00000408314 SLC4A1APQ9BWU0 796 aaKnown RBP13.58□□□□□ -0.24
SNORD88A-201ENST00000408314 MSH6P52701 1360 aa13.58□□□□□ -0.24
SNORD88A-201ENST00000408314 KIF1BO60333 1816 aa13.57□□□□□ -0.24
SNORD88A-201ENST00000408314 ALKQ9UM73 1620 aa13.57□□□□□ -0.24
SNORD88A-201ENST00000408314 HSPA1LP34931 641 aa13.57□□□□□ -0.24
SNORD88A-201ENST00000408314 CHD2O14647 1828 aaKnown RBP13.57□□□□□ -0.24
SNORD88A-201ENST00000408314 XIRP1Q702N8 1843 aaKnown RBP13.57□□□□□ -0.24
SNORD88A-201ENST00000408314 CLTCL1P53675 1640 aa13.57□□□□□ -0.24
SNORD88A-201ENST00000408314 SETBP1Q9Y6X0 1596 aa13.56□□□□□ -0.24
SNORD88A-201ENST00000408314 ADAMTS13Q76LX8 1427 aa13.56□□□□□ -0.24
SNORD88A-201ENST00000408314 FAM135BQ49AJ0 1406 aa13.55□□□□□ -0.24
SNORD88A-201ENST00000408314 NUTM2DQ5VT03 806 aaPredicted RBP13.53□□□□□ -0.24
SNORD88A-201ENST00000408314 C14orf37Q86TY3 774 aa13.53□□□□□ -0.24
SNORD88A-201ENST00000408314 RPGRIP1LQ68CZ1 1315 aa13.53□□□□□ -0.24
SNORD88A-201ENST00000408314 NEXMIFQ5QGS0 1516 aa13.52□□□□□ -0.25
SNORD88A-201ENST00000408314 CCDC144AA2RUR9 1427 aa13.51□□□□□ -0.25
SNORD88A-201ENST00000408314 VGFO15240 615 aaPredicted RBP13.51□□□□□ -0.25
SNORD88A-201ENST00000408314 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
SNORD88A-201ENST00000408314 NRXN3Q9Y4C0 1643 aa13.5□□□□□ -0.25
SNORD88A-201ENST00000408314 MED1Q15648 1581 aaPredicted RBP13.49□□□□□ -0.25
SNORD88A-201ENST00000408314 SETD5Q9C0A6 1442 aa13.49□□□□□ -0.25
SNORD88A-201ENST00000408314 CADPS2Q86UW7 1296 aa13.49□□□□□ -0.25
SNORD88A-201ENST00000408314 AMOTL2Q9Y2J4 779 aa13.49□□□□□ -0.25
SNORD88A-201ENST00000408314 DCCP43146 1447 aa13.48□□□□□ -0.25
SNORD88A-201ENST00000408314 XRN1Q8IZH2 1706 aaKnown RBP13.48□□□□□ -0.25
SNORD88A-201ENST00000408314 ROBO1Q9Y6N7 1651 aa13.48□□□□□ -0.25
SNORD88A-201ENST00000408314 ATF3P18847 181 aa13.47□□□□□ -0.25
SNORD88A-201ENST00000408314 MPHOSPH9Q99550 1183 aa13.47□□□□□ -0.25
SNORD88A-201ENST00000408314 C19orf44Q9H6X5 657 aa13.47□□□□□ -0.25
SNORD88A-201ENST00000408314 SLAIN2Q9P270 581 aa13.47□□□□□ -0.25
SNORD88A-201ENST00000408314 PHF23Q9BUL5 403 aaPredicted RBP13.46□□□□□ -0.25
SNORD88A-201ENST00000408314 RBM33Q96EV2 1170 aaKnown RBP13.45□□□□□ -0.26
SNORD88A-201ENST00000408314 PTPRUQ92729 1446 aa13.45□□□□□ -0.26
SNORD88A-201ENST00000408314 PPLO60437 1756 aa13.45□□□□□ -0.26
SNORD88A-201ENST00000408314 ANKRD30BQ9BXX2 1392 aa13.45□□□□□ -0.26
SNORD88A-201ENST00000408314 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.44□□□□□ -0.26
SNORD88A-201ENST00000408314 PTCH1Q13635 1447 aa13.43□□□□□ -0.26
SNORD88A-201ENST00000408314 METP08581 1390 aa13.43□□□□□ -0.26
SNORD88A-201ENST00000408314 RAB3GAP2Q9H2M9 1393 aa13.43□□□□□ -0.26
SNORD88A-201ENST00000408314 PRAG1Q86YV5 1406 aa13.42□□□□□ -0.26
SNORD88A-201ENST00000408314 ADGRL3Q9HAR2 1447 aa13.42□□□□□ -0.26
SNORD88A-201ENST00000408314 PHLPP1O60346 1717 aa13.42□□□□□ -0.26
SNORD88A-201ENST00000408314 SPATA31E1Q6ZUB1 1445 aa13.41□□□□□ -0.26
SNORD88A-201ENST00000408314 FOXD1Q16676 465 aa13.4□□□□□ -0.26
SNORD88A-201ENST00000408314 JCADQ9P266 1359 aa13.4□□□□□ -0.26
SNORD88A-201ENST00000408314 AHDC1Q5TGY3 1603 aaPredicted RBP13.39□□□□□ -0.27
SNORD88A-201ENST00000408314 SETD1AO15047 1707 aaKnown RBP13.39□□□□□ -0.27
SNORD88A-201ENST00000408314 SOCS7O14512 581 aa13.39□□□□□ -0.27
SNORD88A-201ENST00000408314 HRCP23327 699 aa13.39□□□□□ -0.27
SNORD88A-201ENST00000408314 ILDR2Q71H61 639 aa13.38□□□□□ -0.27
SNORD88A-201ENST00000408314 IFT172Q9UG01 1749 aa13.38□□□□□ -0.27
SNORD88A-201ENST00000408314 RGL3Q3MIN7 710 aa13.37□□□□□ -0.27
SNORD88A-201ENST00000408314 NALCNQ8IZF0 1738 aa13.36□□□□□ -0.27
SNORD88A-201ENST00000408314 COL16A1Q07092 1604 aaPredicted RBP13.36□□□□□ -0.27
SNORD88A-201ENST00000408314 MST1RQ04912 1400 aa13.36□□□□□ -0.27
SNORD88A-201ENST00000408314 MYOM2P54296 1465 aa13.36□□□□□ -0.27
SNORD88A-201ENST00000408314 LAMC1P11047 1609 aa13.35□□□□□ -0.27
SNORD88A-201ENST00000408314 ASXL1Q8IXJ9 1541 aa13.35□□□□□ -0.27
SNORD88A-201ENST00000408314 PIK3C2GO75747 1445 aa13.35□□□□□ -0.27
SNORD88A-201ENST00000408314 SPATA31A6Q5VVP1 1343 aa13.35□□□□□ -0.27
SNORD88A-201ENST00000408314 TECPR2O15040 1411 aa13.34□□□□□ -0.27
SNORD88A-201ENST00000408314 BRINP3Q76B58 766 aa13.34□□□□□ -0.27
SNORD88A-201ENST00000408314 ROBO2Q9HCK4 1378 aa13.33□□□□□ -0.27
SNORD88A-201ENST00000408314 ADGRF5Q8IZF2 1346 aa13.33□□□□□ -0.28
SNORD88A-201ENST00000408314 KNDC1Q76NI1 1749 aa13.33□□□□□ -0.28
SNORD88A-201ENST00000408314 LRPPRCP42704 1394 aaKnown RBP13.32□□□□□ -0.28
SNORD88A-201ENST00000408314 SHPRHQ149N8 1683 aa13.32□□□□□ -0.28
SNORD88A-201ENST00000408314 STAC3Q96MF2 364 aa13.32□□□□□ -0.28
SNORD88A-201ENST00000408314 CDC42BPGQ6DT37 1551 aa13.32□□□□□ -0.28
SNORD88A-201ENST00000408314 ABCC11Q96J66 1382 aa13.32□□□□□ -0.28
SNORD88A-201ENST00000408314 NHSL1Q5SYE7 1610 aa13.31□□□□□ -0.28
SNORD88A-201ENST00000408314 C1orf167Q5SNV9 1468 aa13.3□□□□□ -0.28
SNORD88A-201ENST00000408314 NRXN1Q9ULB1 1477 aa13.3□□□□□ -0.28
SNORD88A-201ENST00000408314 LRRC59Q96AG4 307 aaKnown RBP13.29□□□□□ -0.28
SNORD88A-201ENST00000408314 DHX57Q6P158 1386 aaKnown RBP13.29□□□□□ -0.28
SNORD88A-201ENST00000408314 YTHDC2Q9H6S0 1430 aaKnown RBP13.29□□□□□ -0.28
SNORD88A-201ENST00000408314 MEX3CQ5U5Q3 659 aaKnown RBP13.28□□□□□ -0.28
SNORD88A-201ENST00000408314 SIRT1Q96EB6 747 aa13.28□□□□□ -0.28
SNORD88A-201ENST00000408314 C14orf93Q9H972 538 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms