RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 ROBO1Q9Y6N7 1651 aa32.77■■■□□ 2.84
TRAF4-203ENST00000394925 RPRD2Q5VT52 1461 aaKnown RBP32.76■■■□□ 2.84
TRAF4-203ENST00000394925 NWD1Q149M9 1564 aa32.75■■■□□ 2.83
TRAF4-203ENST00000394925 NKTRP30414 1462 aaKnown RBP32.75■■■□□ 2.83
TRAF4-203ENST00000394925 MYO5BQ9ULV0 1848 aa32.74■■■□□ 2.83
TRAF4-203ENST00000394925 MSH6P52701 1360 aa32.7■■■□□ 2.83
TRAF4-203ENST00000394925 ZFYVE9O95405 1425 aa32.7■■■□□ 2.83
TRAF4-203ENST00000394925 GCC2Q8IWJ2 1684 aa32.7■■■□□ 2.83
TRAF4-203ENST00000394925 PPP1R15AO75807 674 aaPredicted RBP32.7■■■□□ 2.83
TRAF4-203ENST00000394925 RIMS2Q9UQ26 1411 aa32.69■■■□□ 2.82
TRAF4-203ENST00000394925 PLEKHG1Q9ULL1 1385 aa32.69■■■□□ 2.82
TRAF4-203ENST00000394925 HDGFP51858 240 aaKnown RBP32.68■■■□□ 2.82
TRAF4-203ENST00000394925 TMEM131LA2VDJ0 1609 aa32.66■■■□□ 2.82
TRAF4-203ENST00000394925 CHD2O14647 1828 aaKnown RBP32.65■■■□□ 2.82
TRAF4-203ENST00000394925 CHGAP10645 457 aaKnown RBP32.65■■■□□ 2.82
TRAF4-203ENST00000394925 SLAIN2Q9P270 581 aa32.65■■■□□ 2.82
TRAF4-203ENST00000394925 POTEAQ6S8J7 498 aa32.63■■■□□ 2.81
TRAF4-203ENST00000394925 UNC13BO14795 1591 aa32.61■■■□□ 2.81
TRAF4-203ENST00000394925 TBX22Q9Y458 520 aa32.59■■■□□ 2.81
TRAF4-203ENST00000394925 PHLPP1O60346 1717 aa32.58■■■□□ 2.81
TRAF4-203ENST00000394925 NUTM2DQ5VT03 806 aaPredicted RBP32.58■■■□□ 2.81
TRAF4-203ENST00000394925 ABCF1Q8NE71 845 aaKnown RBP eCLIP32.58■■■□□ 2.81
TRAF4-203ENST00000394925 E9PCH4 1651 aa32.56■■■□□ 2.8
TRAF4-203ENST00000394925 C14orf37Q86TY3 774 aa32.53■■■□□ 2.8
TRAF4-203ENST00000394925 JCADQ9P266 1359 aa32.52■■■□□ 2.8
TRAF4-203ENST00000394925 ADAMTS13Q76LX8 1427 aa32.51■■■□□ 2.79
TRAF4-203ENST00000394925 ROCK1Q13464 1354 aa32.5■■■□□ 2.79
TRAF4-203ENST00000394925 NCOA3Q9Y6Q9 1424 aa32.5■■■□□ 2.79
TRAF4-203ENST00000394925 IQGAP3Q86VI3 1631 aa32.49■■■□□ 2.79
TRAF4-203ENST00000394925 NUP155O75694 1391 aa32.46■■■□□ 2.79
TRAF4-203ENST00000394925 DIP2AQ14689 1571 aa32.45■■■□□ 2.79
TRAF4-203ENST00000394925 ITGAEP38570 1179 aa32.45■■■□□ 2.79
TRAF4-203ENST00000394925 COL16A1Q07092 1604 aaPredicted RBP32.44■■■□□ 2.78
TRAF4-203ENST00000394925 PIK3R4Q99570 1358 aa32.44■■■□□ 2.78
TRAF4-203ENST00000394925 SIPA1L2Q9P2F8 1722 aaPredicted RBP32.43■■■□□ 2.78
TRAF4-203ENST00000394925 CADPS2Q86UW7 1296 aa32.43■■■□□ 2.78
TRAF4-203ENST00000394925 C19orf44Q9H6X5 657 aa32.43■■■□□ 2.78
TRAF4-203ENST00000394925 ATF3P18847 181 aa32.42■■■□□ 2.78
TRAF4-203ENST00000394925 AMOTL2Q9Y2J4 779 aa32.39■■■□□ 2.78
TRAF4-203ENST00000394925 TRPM2O94759 1503 aa32.38■■■□□ 2.77
TRAF4-203ENST00000394925 PTPRUQ92729 1446 aa32.36■■■□□ 2.77
TRAF4-203ENST00000394925 SETD1AO15047 1707 aaKnown RBP32.35■■■□□ 2.77
TRAF4-203ENST00000394925 LRP6O75581 1613 aa32.34■■■□□ 2.77
TRAF4-203ENST00000394925 SPATA31A6Q5VVP1 1343 aa32.34■■■□□ 2.77
TRAF4-203ENST00000394925 MEX3CQ5U5Q3 659 aaKnown RBP32.34■■■□□ 2.77
TRAF4-203ENST00000394925 AHDC1Q5TGY3 1603 aaPredicted RBP32.33■■■□□ 2.77
TRAF4-203ENST00000394925 PPARGC1BQ86YN6 1023 aaKnown RBP32.32■■■□□ 2.76
TRAF4-203ENST00000394925 BRINP3Q76B58 766 aa32.29■■■□□ 2.76
TRAF4-203ENST00000394925 ZNF326Q5BKZ1 582 aaKnown RBP32.28■■■□□ 2.76
TRAF4-203ENST00000394925 SPHKAPQ2M3C7 1700 aa32.28■■■□□ 2.76
TRAF4-203ENST00000394925 SHPRHQ149N8 1683 aa32.27■■■□□ 2.76
TRAF4-203ENST00000394925 NRXN3Q9Y4C0 1643 aa32.27■■■□□ 2.76
TRAF4-203ENST00000394925 ZNF772Q68DY9 489 aaPredicted RBP32.25■■■□□ 2.75
TRAF4-203ENST00000394925 SETBP1Q9Y6X0 1596 aa32.24■■■□□ 2.75
TRAF4-203ENST00000394925 XRN1Q8IZH2 1706 aaKnown RBP32.23■■■□□ 2.75
TRAF4-203ENST00000394925 DCCP43146 1447 aa32.22■■■□□ 2.75
TRAF4-203ENST00000394925 NUTM2BA6NNL0 878 aaPredicted RBP32.2■■■□□ 2.75
TRAF4-203ENST00000394925 NUTM2EB1AL46 878 aaPredicted RBP32.2■■■□□ 2.75
TRAF4-203ENST00000394925 NUTM2AQ8IVF1 878 aaPredicted RBP32.2■■■□□ 2.75
TRAF4-203ENST00000394925 METP08581 1390 aa32.19■■■□□ 2.74
TRAF4-203ENST00000394925 ASXL1Q8IXJ9 1541 aa32.18■■■□□ 2.74
TRAF4-203ENST00000394925 TRIM52Q96A61 297 aa32.18■■■□□ 2.74
TRAF4-203ENST00000394925 MST1RQ04912 1400 aa32.17■■■□□ 2.74
TRAF4-203ENST00000394925 CLTCL1P53675 1640 aa32.13■■■□□ 2.73
TRAF4-203ENST00000394925 NEXMIFQ5QGS0 1516 aa32.11■■■□□ 2.73
TRAF4-203ENST00000394925 SETD5Q9C0A6 1442 aa32.11■■■□□ 2.73
TRAF4-203ENST00000394925 RXRBP28702 533 aa32.1■■■□□ 2.73
TRAF4-203ENST00000394925 NHSL1Q5SYE7 1610 aa32.1■■■□□ 2.73
TRAF4-203ENST00000394925 ADGRL3Q9HAR2 1447 aa32.09■■■□□ 2.73
TRAF4-203ENST00000394925 DDX17Q92841 729 aaKnown RBP32.08■■■□□ 2.73
TRAF4-203ENST00000394925 UPF1Q92900 1129 aaKnown RBP eCLIP32.08■■■□□ 2.73
TRAF4-203ENST00000394925 LRRC59Q96AG4 307 aaKnown RBP32.08■■■□□ 2.73
TRAF4-203ENST00000394925 KIF1BO60333 1816 aa32.07■■■□□ 2.72
TRAF4-203ENST00000394925 AFF2P51816 1311 aa32.06■■■□□ 2.72
TRAF4-203ENST00000394925 NALCNQ8IZF0 1738 aa32.05■■■□□ 2.72
TRAF4-203ENST00000394925 NAIPQ13075 1403 aa32.01■■■□□ 2.72
TRAF4-203ENST00000394925 PNPLA6Q8IY17 1366 aa31.99■■■□□ 2.71
TRAF4-203ENST00000394925 C8orf37Q96NL8 207 aa31.99■■■□□ 2.71
TRAF4-203ENST00000394925 RRBP1Q9P2E9 1410 aaKnown RBP31.98■■■□□ 2.71
TRAF4-203ENST00000394925 CDK12Q9NYV4 1490 aaPredicted RBP31.97■■■□□ 2.71
TRAF4-203ENST00000394925 VGFO15240 615 aaPredicted RBP31.97■■■□□ 2.71
TRAF4-203ENST00000394925 C1orf167Q5SNV9 1468 aa31.97■■■□□ 2.71
TRAF4-203ENST00000394925 PTCH1Q13635 1447 aa31.93■■■□□ 2.7
TRAF4-203ENST00000394925 QTRT2Q9H974 415 aaKnown RBP31.93■■■□□ 2.7
TRAF4-203ENST00000394925 ROBO2Q9HCK4 1378 aa31.93■■■□□ 2.7
TRAF4-203ENST00000394925 ORAI2Q96SN7 254 aa31.9■■■□□ 2.7
TRAF4-203ENST00000394925 ADAMTS2O95450 1211 aa31.89■■■□□ 2.7
TRAF4-203ENST00000394925 RBM6P78332 1123 aaKnown RBP31.88■■■□□ 2.69
TRAF4-203ENST00000394925 NGLY1Q96IV0 654 aa31.88■■■□□ 2.69
TRAF4-203ENST00000394925 SLC4A1APQ9BWU0 796 aaKnown RBP31.88■■■□□ 2.69
TRAF4-203ENST00000394925 RPGRIP1LQ68CZ1 1315 aa31.88■■■□□ 2.69
TRAF4-203ENST00000394925 RGS12O14924 1447 aa31.85■■■□□ 2.69
TRAF4-203ENST00000394925 LAMC1P11047 1609 aa31.85■■■□□ 2.69
TRAF4-203ENST00000394925 SOS2Q07890 1332 aaPredicted RBP31.84■■■□□ 2.69
TRAF4-203ENST00000394925 HFM1A2PYH4 1435 aa31.83■■■□□ 2.69
TRAF4-203ENST00000394925 PPLO60437 1756 aa31.83■■■□□ 2.69
TRAF4-203ENST00000394925 PRAG1Q86YV5 1406 aa31.82■■■□□ 2.68
TRAF4-203ENST00000394925 FOXD1Q16676 465 aa31.77■■■□□ 2.68
TRAF4-203ENST00000394925 USP21Q9UK80 565 aa31.76■■■□□ 2.67
TRAF4-203ENST00000394925 ESCO1Q5FWF5 840 aa31.74■■■□□ 2.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms