RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 RAB3GAP2Q9H2M9 1393 aa11.47□□□□□ -0.57
HMGB3P1-201ENST00000393368 EID1Q9Y6B2 187 aa11.47□□□□□ -0.57
HMGB3P1-201ENST00000393368 KDM5AP29375 1690 aaKnown RBP11.46□□□□□ -0.57
HMGB3P1-201ENST00000393368 MYO5BQ9ULV0 1848 aa11.46□□□□□ -0.58
HMGB3P1-201ENST00000393368 CLTCL1P53675 1640 aa11.46□□□□□ -0.58
HMGB3P1-201ENST00000393368 TRPM2O94759 1503 aa11.45□□□□□ -0.58
HMGB3P1-201ENST00000393368 ZFYVE9O95405 1425 aa11.45□□□□□ -0.58
HMGB3P1-201ENST00000393368 RIMS2Q9UQ26 1411 aa11.45□□□□□ -0.58
HMGB3P1-201ENST00000393368 PPP4R3CPQ6ZMV5 832 aa11.44□□□□□ -0.58
HMGB3P1-201ENST00000393368 FBXO41Q8TF61 875 aa11.44□□□□□ -0.58
HMGB3P1-201ENST00000393368 PPP1R15AO75807 674 aaPredicted RBP11.43□□□□□ -0.58
HMGB3P1-201ENST00000393368 BCANQ96GW7 911 aa11.43□□□□□ -0.58
HMGB3P1-201ENST00000393368 SLC26A8Q96RN1 970 aa11.43□□□□□ -0.58
HMGB3P1-201ENST00000393368 MPHOSPH9Q99550 1183 aa11.43□□□□□ -0.58
HMGB3P1-201ENST00000393368 ZNF326Q5BKZ1 582 aaKnown RBP11.41□□□□□ -0.58
HMGB3P1-201ENST00000393368 STRCP1A6NGW2 1772 aa11.41□□□□□ -0.58
HMGB3P1-201ENST00000393368 PLEKHG1Q9ULL1 1385 aa11.4□□□□□ -0.59
HMGB3P1-201ENST00000393368 CPS1P31327 1500 aa11.39□□□□□ -0.59
HMGB3P1-201ENST00000393368 ADAMTS13Q76LX8 1427 aa11.37□□□□□ -0.59
HMGB3P1-201ENST00000393368 NEXMIFQ5QGS0 1516 aa11.37□□□□□ -0.59
HMGB3P1-201ENST00000393368 LRRC7Q96NW7 1537 aa11.37□□□□□ -0.59
HMGB3P1-201ENST00000393368 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.37□□□□□ -0.59
HMGB3P1-201ENST00000393368 RBM33Q96EV2 1170 aaKnown RBP11.37□□□□□ -0.59
HMGB3P1-201ENST00000393368 IQSEC2Q5JU85 1478 aa11.37□□□□□ -0.59
HMGB3P1-201ENST00000393368 CCDC144AA2RUR9 1427 aa11.36□□□□□ -0.59
HMGB3P1-201ENST00000393368 HDGFP51858 240 aaKnown RBP11.36□□□□□ -0.59
HMGB3P1-201ENST00000393368 UBAP1LF5GYI3 381 aa11.35□□□□□ -0.59
HMGB3P1-201ENST00000393368 KIF1BO60333 1816 aa11.35□□□□□ -0.59
HMGB3P1-201ENST00000393368 NRXN3Q9Y4C0 1643 aa11.35□□□□□ -0.59
HMGB3P1-201ENST00000393368 RGL3Q3MIN7 710 aa11.34□□□□□ -0.59
HMGB3P1-201ENST00000393368 NWD1Q149M9 1564 aa11.33□□□□□ -0.6
HMGB3P1-201ENST00000393368 KCNA6P17658 529 aa11.33□□□□□ -0.6
HMGB3P1-201ENST00000393368 SPATA31E1Q6ZUB1 1445 aa11.33□□□□□ -0.6
HMGB3P1-201ENST00000393368 SETBP1Q9Y6X0 1596 aa11.33□□□□□ -0.6
HMGB3P1-201ENST00000393368 TMEM94Q12767 1356 aa11.32□□□□□ -0.6
HMGB3P1-201ENST00000393368 PIP4K2BP78356 416 aa11.32□□□□□ -0.6
HMGB3P1-201ENST00000393368 TBX22Q9Y458 520 aa11.32□□□□□ -0.6
HMGB3P1-201ENST00000393368 PTPRUQ92729 1446 aa11.32□□□□□ -0.6
HMGB3P1-201ENST00000393368 ALKQ9UM73 1620 aa11.31□□□□□ -0.6
HMGB3P1-201ENST00000393368 METP08581 1390 aa11.31□□□□□ -0.6
HMGB3P1-201ENST00000393368 PROSER2Q86WR7 435 aaPredicted RBP11.31□□□□□ -0.6
HMGB3P1-201ENST00000393368 DIP2AQ14689 1571 aa11.31□□□□□ -0.6
HMGB3P1-201ENST00000393368 ACIN1Q9UKV3 1341 aaKnown RBP11.31□□□□□ -0.6
HMGB3P1-201ENST00000393368 ANKRD30BQ9BXX2 1392 aa11.3□□□□□ -0.6
HMGB3P1-201ENST00000393368 HRCP23327 699 aa11.3□□□□□ -0.6
HMGB3P1-201ENST00000393368 NKTRP30414 1462 aaKnown RBP11.3□□□□□ -0.6
HMGB3P1-201ENST00000393368 PPLO60437 1756 aa11.29□□□□□ -0.6
HMGB3P1-201ENST00000393368 XIRP1Q702N8 1843 aaKnown RBP11.29□□□□□ -0.6
HMGB3P1-201ENST00000393368 RPGRIP1LQ68CZ1 1315 aa11.29□□□□□ -0.6
HMGB3P1-201ENST00000393368 ADGRF5Q8IZF2 1346 aa11.29□□□□□ -0.6
HMGB3P1-201ENST00000393368 VGFO15240 615 aaPredicted RBP11.28□□□□□ -0.6
HMGB3P1-201ENST00000393368 AMOTL2Q9Y2J4 779 aa11.28□□□□□ -0.6
HMGB3P1-201ENST00000393368 CHD2O14647 1828 aaKnown RBP11.28□□□□□ -0.6
HMGB3P1-201ENST00000393368 TOM1O60784 492 aa11.27□□□□□ -0.61
HMGB3P1-201ENST00000393368 PIK3R4Q99570 1358 aa11.26□□□□□ -0.61
HMGB3P1-201ENST00000393368 SETD1AO15047 1707 aaKnown RBP11.26□□□□□ -0.61
HMGB3P1-201ENST00000393368 XRN1Q8IZH2 1706 aaKnown RBP11.26□□□□□ -0.61
HMGB3P1-201ENST00000393368 IFT172Q9UG01 1749 aa11.26□□□□□ -0.61
HMGB3P1-201ENST00000393368 TRIM26Q12899 539 aaPredicted RBP11.25□□□□□ -0.61
HMGB3P1-201ENST00000393368 C14orf37Q86TY3 774 aa11.25□□□□□ -0.61
HMGB3P1-201ENST00000393368 HSPA1LP34931 641 aa11.24□□□□□ -0.61
HMGB3P1-201ENST00000393368 PIK3C2GO75747 1445 aa11.24□□□□□ -0.61
HMGB3P1-201ENST00000393368 MSH6P52701 1360 aa11.23□□□□□ -0.61
HMGB3P1-201ENST00000393368 ASXL1Q8IXJ9 1541 aa11.23□□□□□ -0.61
HMGB3P1-201ENST00000393368 TMEM132EQ6IEE7 984 aa11.22□□□□□ -0.61
HMGB3P1-201ENST00000393368 ROBO2Q9HCK4 1378 aa11.22□□□□□ -0.61
HMGB3P1-201ENST00000393368 KDM2AQ9Y2K7 1162 aa11.22□□□□□ -0.61
HMGB3P1-201ENST00000393368 MYOM2P54296 1465 aa11.21□□□□□ -0.61
HMGB3P1-201ENST00000393368 STK26Q9P289 416 aa11.21□□□□□ -0.61
HMGB3P1-201ENST00000393368 NRXN1Q9ULB1 1477 aa11.2□□□□□ -0.62
HMGB3P1-201ENST00000393368 DHX57Q6P158 1386 aaKnown RBP11.2□□□□□ -0.62
HMGB3P1-201ENST00000393368 CFAP70Q5T0N1 1121 aa11.2□□□□□ -0.62
HMGB3P1-201ENST00000393368 DCAF11Q8TEB1 546 aa11.2□□□□□ -0.62
HMGB3P1-201ENST00000393368 SIN3AQ96ST3 1273 aa11.19□□□□□ -0.62
HMGB3P1-201ENST00000393368 PTCH1Q13635 1447 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 ROBO1Q9Y6N7 1651 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 CNKSR2Q8WXI2 1034 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 C19orf44Q9H6X5 657 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 NALCNQ8IZF0 1738 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 ADGRL3Q9HAR2 1447 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 NCOA3Q9Y6Q9 1424 aa11.18□□□□□ -0.62
HMGB3P1-201ENST00000393368 PLEKHH1Q9ULM0 1364 aa11.17□□□□□ -0.62
HMGB3P1-201ENST00000393368 ATF3P18847 181 aa11.17□□□□□ -0.62
HMGB3P1-201ENST00000393368 C14orf93Q9H972 538 aaKnown RBP11.17□□□□□ -0.62
HMGB3P1-201ENST00000393368 SLAIN2Q9P270 581 aa11.17□□□□□ -0.62
HMGB3P1-201ENST00000393368 YTHDC2Q9H6S0 1430 aaKnown RBP11.17□□□□□ -0.62
HMGB3P1-201ENST00000393368 LRPPRCP42704 1394 aaKnown RBP11.16□□□□□ -0.62
HMGB3P1-201ENST00000393368 NEUROD1Q13562 356 aa11.16□□□□□ -0.62
HMGB3P1-201ENST00000393368 WAPLQ7Z5K2 1190 aa11.16□□□□□ -0.62
HMGB3P1-201ENST00000393368 FAM135BQ49AJ0 1406 aa11.16□□□□□ -0.62
HMGB3P1-201ENST00000393368 PRAG1Q86YV5 1406 aa11.16□□□□□ -0.62
HMGB3P1-201ENST00000393368 CADPS2Q86UW7 1296 aa11.15□□□□□ -0.62
HMGB3P1-201ENST00000393368 MST1RQ04912 1400 aa11.15□□□□□ -0.62
HMGB3P1-201ENST00000393368 TECPR2O15040 1411 aa11.14□□□□□ -0.63
HMGB3P1-201ENST00000393368 ADGRB1O14514 1584 aa11.14□□□□□ -0.63
HMGB3P1-201ENST00000393368 ABCC11Q96J66 1382 aa11.14□□□□□ -0.63
HMGB3P1-201ENST00000393368 LAMC1P11047 1609 aa11.13□□□□□ -0.63
HMGB3P1-201ENST00000393368 DCCP43146 1447 aa11.13□□□□□ -0.63
HMGB3P1-201ENST00000393368 SAFB2Q14151 953 aaKnown RBP eCLIP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms