RNA–Protein interactions for RNA: ENST00000383282.3

NPHP3-202, Transcript of nephrocystin 3, humanhuman

TSL 1 (best) BASIC

Gene NPHP3, Length 782 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-202ENST00000383282 ITGAEP38570 1179 aa40.43■■■■■ 4.06
NPHP3-202ENST00000383282 PROSER2Q86WR7 435 aaPredicted RBP40.43■■■■■ 4.06
NPHP3-202ENST00000383282 XIRP1Q702N8 1843 aaKnown RBP40.42■■■■■ 4.06
NPHP3-202ENST00000383282 PHF23Q9BUL5 403 aaPredicted RBP40.41■■■■■ 4.06
NPHP3-202ENST00000383282 ZFYVE9O95405 1425 aa40.41■■■■■ 4.06
NPHP3-202ENST00000383282 CHGAP10645 457 aaKnown RBP40.4■■■■■ 4.06
NPHP3-202ENST00000383282 RIMS2Q9UQ26 1411 aa40.4■■■■■ 4.06
NPHP3-202ENST00000383282 PLEKHG1Q9ULL1 1385 aa40.39■■■■■ 4.06
NPHP3-202ENST00000383282 NKTRP30414 1462 aaKnown RBP40.38■■■■■ 4.05
NPHP3-202ENST00000383282 PPARGC1BQ86YN6 1023 aaKnown RBP40.37■■■■■ 4.05
NPHP3-202ENST00000383282 NUP155O75694 1391 aa40.35■■■■■ 4.05
NPHP3-202ENST00000383282 TMEM131LA2VDJ0 1609 aa40.35■■■■■ 4.05
NPHP3-202ENST00000383282 ABCF1Q8NE71 845 aaKnown RBP eCLIP40.35■■■■■ 4.05
NPHP3-202ENST00000383282 IQGAP3Q86VI3 1631 aa40.34■■■■■ 4.05
NPHP3-202ENST00000383282 NWD1Q149M9 1564 aa40.34■■■■■ 4.05
NPHP3-202ENST00000383282 FAM135BQ49AJ0 1406 aa40.33■■■■■ 4.05
NPHP3-202ENST00000383282 E9PCH4 1651 aa40.33■■■■■ 4.05
NPHP3-202ENST00000383282 RBM33Q96EV2 1170 aaKnown RBP40.31■■■■■ 4.04
NPHP3-202ENST00000383282 MYO5BQ9ULV0 1848 aa40.3■■■■■ 4.04
NPHP3-202ENST00000383282 MSH6P52701 1360 aa40.26■■■■■ 4.04
NPHP3-202ENST00000383282 TBX22Q9Y458 520 aa40.25■■■■■ 4.03
NPHP3-202ENST00000383282 NUTM2DQ5VT03 806 aaPredicted RBP40.2■■■■■ 4.03
NPHP3-202ENST00000383282 CHD2O14647 1828 aaKnown RBP40.16■■■■■ 4.02
NPHP3-202ENST00000383282 ROBO1Q9Y6N7 1651 aa40.15■■■■■ 4.02
NPHP3-202ENST00000383282 ADAMTS13Q76LX8 1427 aa40.13■■■■■ 4.01
NPHP3-202ENST00000383282 DIP2AQ14689 1571 aa40.13■■■■■ 4.01
NPHP3-202ENST00000383282 PIK3R4Q99570 1358 aa40.11■■■■■ 4.01
NPHP3-202ENST00000383282 NCOA3Q9Y6Q9 1424 aa40.11■■■■■ 4.01
NPHP3-202ENST00000383282 SLAIN2Q9P270 581 aa40.11■■■■■ 4.01
NPHP3-202ENST00000383282 C14orf37Q86TY3 774 aa40.09■■■■■ 4.01
NPHP3-202ENST00000383282 RRBP1Q9P2E9 1410 aaKnown RBP40.08■■■■■ 4.01
NPHP3-202ENST00000383282 TRPM2O94759 1503 aa40.02■■■■■ 4
NPHP3-202ENST00000383282 SPHKAPQ2M3C7 1700 aa40.02■■■■■ 4
NPHP3-202ENST00000383282 ZNF326Q5BKZ1 582 aaKnown RBP40.01■■■■■ 4
NPHP3-202ENST00000383282 AMOTL2Q9Y2J4 779 aa39.98■■■■□ 3.99
NPHP3-202ENST00000383282 CADPS2Q86UW7 1296 aa39.97■■■■□ 3.99
NPHP3-202ENST00000383282 C19orf44Q9H6X5 657 aa39.96■■■■□ 3.99
NPHP3-202ENST00000383282 NAIPQ13075 1403 aa39.95■■■■□ 3.99
NPHP3-202ENST00000383282 RGS17Q9UGC6 210 aaPredicted RBP39.95■■■■□ 3.99
NPHP3-202ENST00000383282 ATF3P18847 181 aa39.94■■■■□ 3.98
NPHP3-202ENST00000383282 PHLPP1O60346 1717 aa39.91■■■■□ 3.98
NPHP3-202ENST00000383282 JCADQ9P266 1359 aa39.9■■■■□ 3.98
NPHP3-202ENST00000383282 PTPRUQ92729 1446 aa39.9■■■■□ 3.98
NPHP3-202ENST00000383282 SETBP1Q9Y6X0 1596 aa39.89■■■■□ 3.98
NPHP3-202ENST00000383282 SIPA1L2Q9P2F8 1722 aaPredicted RBP39.85■■■■□ 3.97
NPHP3-202ENST00000383282 TRIM52Q96A61 297 aa39.85■■■■□ 3.97
NPHP3-202ENST00000383282 CLTCL1P53675 1640 aa39.83■■■■□ 3.97
NPHP3-202ENST00000383282 NRXN3Q9Y4C0 1643 aa39.83■■■■□ 3.97
NPHP3-202ENST00000383282 HFM1A2PYH4 1435 aa39.82■■■■□ 3.96
NPHP3-202ENST00000383282 DCCP43146 1447 aa39.78■■■■□ 3.96
NPHP3-202ENST00000383282 COL16A1Q07092 1604 aaPredicted RBP39.78■■■■□ 3.96
NPHP3-202ENST00000383282 NEXMIFQ5QGS0 1516 aa39.77■■■■□ 3.96
NPHP3-202ENST00000383282 METP08581 1390 aa39.77■■■■□ 3.96
NPHP3-202ENST00000383282 XRN1Q8IZH2 1706 aaKnown RBP39.77■■■■□ 3.96
NPHP3-202ENST00000383282 POTEAQ6S8J7 498 aa39.75■■■■□ 3.95
NPHP3-202ENST00000383282 AHDC1Q5TGY3 1603 aaPredicted RBP39.73■■■■□ 3.95
NPHP3-202ENST00000383282 SLC4A1APQ9BWU0 796 aaKnown RBP39.73■■■■□ 3.95
NPHP3-202ENST00000383282 KIF1BO60333 1816 aa39.72■■■■□ 3.95
NPHP3-202ENST00000383282 SPATA31A6Q5VVP1 1343 aa39.71■■■■□ 3.95
NPHP3-202ENST00000383282 BRINP3Q76B58 766 aa39.7■■■■□ 3.95
NPHP3-202ENST00000383282 VGFO15240 615 aaPredicted RBP39.69■■■■□ 3.94
NPHP3-202ENST00000383282 MEX3CQ5U5Q3 659 aaKnown RBP39.64■■■■□ 3.94
NPHP3-202ENST00000383282 RPGRIP1LQ68CZ1 1315 aa39.64■■■■□ 3.94
NPHP3-202ENST00000383282 MST1RQ04912 1400 aa39.62■■■■□ 3.93
NPHP3-202ENST00000383282 ADGRL3Q9HAR2 1447 aa39.62■■■■□ 3.93
NPHP3-202ENST00000383282 ASXL1Q8IXJ9 1541 aa39.59■■■■□ 3.93
NPHP3-202ENST00000383282 LRP6O75581 1613 aa39.57■■■■□ 3.92
NPHP3-202ENST00000383282 SHPRHQ149N8 1683 aa39.56■■■■□ 3.92
NPHP3-202ENST00000383282 PTCH1Q13635 1447 aa39.53■■■■□ 3.92
NPHP3-202ENST00000383282 ZNF772Q68DY9 489 aaPredicted RBP39.52■■■■□ 3.92
NPHP3-202ENST00000383282 SETD5Q9C0A6 1442 aa39.49■■■■□ 3.91
NPHP3-202ENST00000383282 FOXD1Q16676 465 aa39.48■■■■□ 3.91
NPHP3-202ENST00000383282 LRRC59Q96AG4 307 aaKnown RBP39.48■■■■□ 3.91
NPHP3-202ENST00000383282 NALCNQ8IZF0 1738 aa39.48■■■■□ 3.91
NPHP3-202ENST00000383282 NUTM2BA6NNL0 878 aaPredicted RBP39.46■■■■□ 3.91
NPHP3-202ENST00000383282 NUTM2EB1AL46 878 aaPredicted RBP39.46■■■■□ 3.91
NPHP3-202ENST00000383282 NUTM2AQ8IVF1 878 aaPredicted RBP39.46■■■■□ 3.91
NPHP3-202ENST00000383282 NHSL1Q5SYE7 1610 aa39.45■■■■□ 3.91
NPHP3-202ENST00000383282 CCDC144AA2RUR9 1427 aa39.45■■■■□ 3.91
NPHP3-202ENST00000383282 ROBO2Q9HCK4 1378 aa39.45■■■■□ 3.91
NPHP3-202ENST00000383282 SETD1AO15047 1707 aaKnown RBP39.44■■■■□ 3.9
NPHP3-202ENST00000383282 PPLO60437 1756 aa39.42■■■■□ 3.9
NPHP3-202ENST00000383282 PRAG1Q86YV5 1406 aa39.41■■■■□ 3.9
NPHP3-202ENST00000383282 C1orf167Q5SNV9 1468 aa39.41■■■■□ 3.9
NPHP3-202ENST00000383282 MPHOSPH9Q99550 1183 aa39.39■■■■□ 3.9
NPHP3-202ENST00000383282 DDX17Q92841 729 aaKnown RBP39.38■■■■□ 3.89
NPHP3-202ENST00000383282 RGL3Q3MIN7 710 aa39.36■■■■□ 3.89
NPHP3-202ENST00000383282 ACIN1Q9UKV3 1341 aaKnown RBP39.33■■■■□ 3.89
NPHP3-202ENST00000383282 ADGRF5Q8IZF2 1346 aa39.32■■■■□ 3.88
NPHP3-202ENST00000383282 PNPLA6Q8IY17 1366 aa39.32■■■■□ 3.88
NPHP3-202ENST00000383282 ANKRD30BQ9BXX2 1392 aa39.32■■■■□ 3.88
NPHP3-202ENST00000383282 ORAI2Q96SN7 254 aa39.29■■■■□ 3.88
NPHP3-202ENST00000383282 SPATA31E1Q6ZUB1 1445 aa39.29■■■■□ 3.88
NPHP3-202ENST00000383282 RXRBP28702 533 aa39.28■■■■□ 3.88
NPHP3-202ENST00000383282 AFF2P51816 1311 aa39.28■■■■□ 3.88
NPHP3-202ENST00000383282 SOS2Q07890 1332 aaPredicted RBP39.23■■■■□ 3.87
NPHP3-202ENST00000383282 C8orf37Q96NL8 207 aa39.23■■■■□ 3.87
NPHP3-202ENST00000383282 LAMC1P11047 1609 aa39.22■■■■□ 3.87
NPHP3-202ENST00000383282 STK26Q9P289 416 aa39.21■■■■□ 3.87
NPHP3-202ENST00000383282 LRPPRCP42704 1394 aaKnown RBP39.18■■■■□ 3.86
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms