RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 DMRT2Q9Y5R5 561 aa17.08■□□□□ 0.33
DEPDC4-202ENST00000378244 SCAF11Q99590 1463 aaKnown RBP17.08■□□□□ 0.32
DEPDC4-202ENST00000378244 HDGFP51858 240 aaKnown RBP17.07■□□□□ 0.32
DEPDC4-202ENST00000378244 SLC26A8Q96RN1 970 aa17.07■□□□□ 0.32
DEPDC4-202ENST00000378244 ARHGAP23Q9P227 1491 aa17.07■□□□□ 0.32
DEPDC4-202ENST00000378244 SLIT1O75093 1534 aa17.07■□□□□ 0.32
DEPDC4-202ENST00000378244 ZFYVE9O95405 1425 aa17.06■□□□□ 0.32
DEPDC4-202ENST00000378244 KIF1BO60333 1816 aa17.05■□□□□ 0.32
DEPDC4-202ENST00000378244 NPHP4O75161 1426 aaPredicted RBP17.05■□□□□ 0.32
DEPDC4-202ENST00000378244 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.05■□□□□ 0.32
DEPDC4-202ENST00000378244 KDM5AP29375 1690 aaKnown RBP17.04■□□□□ 0.32
DEPDC4-202ENST00000378244 SPATA31E1Q6ZUB1 1445 aa17.04■□□□□ 0.32
DEPDC4-202ENST00000378244 CCER1Q8TC90 406 aaPredicted RBP17.04■□□□□ 0.32
DEPDC4-202ENST00000378244 NEURL4Q96JN8 1562 aa17.03■□□□□ 0.32
DEPDC4-202ENST00000378244 KDM2AQ9Y2K7 1162 aa17.03■□□□□ 0.32
DEPDC4-202ENST00000378244 DCAF11Q8TEB1 546 aa17.02■□□□□ 0.31
DEPDC4-202ENST00000378244 VGFO15240 615 aaPredicted RBP17.01■□□□□ 0.31
DEPDC4-202ENST00000378244 POLR1AO95602 1720 aaPredicted RBP17.01■□□□□ 0.31
DEPDC4-202ENST00000378244 ZNF335Q9H4Z2 1342 aaPredicted RBP17■□□□□ 0.31
DEPDC4-202ENST00000378244 RPGRIP1LQ68CZ1 1315 aa17■□□□□ 0.31
DEPDC4-202ENST00000378244 ADGRF5Q8IZF2 1346 aa17■□□□□ 0.31
DEPDC4-202ENST00000378244 MED14O60244 1454 aa16.99■□□□□ 0.31
DEPDC4-202ENST00000378244 NEXMIFQ5QGS0 1516 aa16.99■□□□□ 0.31
DEPDC4-202ENST00000378244 PLEKHG1Q9ULL1 1385 aa16.98■□□□□ 0.31
DEPDC4-202ENST00000378244 IQGAP1P46940 1657 aa16.97■□□□□ 0.31
DEPDC4-202ENST00000378244 L3MBTL2Q969R5 705 aa16.95■□□□□ 0.3
DEPDC4-202ENST00000378244 ADAMTS13Q76LX8 1427 aa16.93■□□□□ 0.3
DEPDC4-202ENST00000378244 RBM33Q96EV2 1170 aaKnown RBP16.92■□□□□ 0.3
DEPDC4-202ENST00000378244 TBX22Q9Y458 520 aa16.92■□□□□ 0.3
DEPDC4-202ENST00000378244 SLC24A1O60721 1099 aa16.91■□□□□ 0.3
DEPDC4-202ENST00000378244 PPLO60437 1756 aa16.91■□□□□ 0.3
DEPDC4-202ENST00000378244 CFAP70Q5T0N1 1121 aa16.9■□□□□ 0.3
DEPDC4-202ENST00000378244 TMEM132EQ6IEE7 984 aa16.9■□□□□ 0.3
DEPDC4-202ENST00000378244 METP08581 1390 aa16.9■□□□□ 0.3
DEPDC4-202ENST00000378244 TONSLQ96HA7 1378 aa16.9■□□□□ 0.3
DEPDC4-202ENST00000378244 AMOTL2Q9Y2J4 779 aa16.87■□□□□ 0.29
DEPDC4-202ENST00000378244 KCNA6P17658 529 aa16.87■□□□□ 0.29
DEPDC4-202ENST00000378244 STK26Q9P289 416 aa16.87■□□□□ 0.29
DEPDC4-202ENST00000378244 NRXN3Q9Y4C0 1643 aa16.87■□□□□ 0.29
DEPDC4-202ENST00000378244 SETBP1Q9Y6X0 1596 aa16.87■□□□□ 0.29
DEPDC4-202ENST00000378244 PIK3C2GO75747 1445 aa16.86■□□□□ 0.29
DEPDC4-202ENST00000378244 IFT172Q9UG01 1749 aa16.86■□□□□ 0.29
DEPDC4-202ENST00000378244 MYOM2P54296 1465 aa16.85■□□□□ 0.29
DEPDC4-202ENST00000378244 C14orf93Q9H972 538 aaKnown RBP16.85■□□□□ 0.29
DEPDC4-202ENST00000378244 ALKQ9UM73 1620 aa16.85■□□□□ 0.29
DEPDC4-202ENST00000378244 CLSPNQ9HAW4 1339 aa16.84■□□□□ 0.29
DEPDC4-202ENST00000378244 PROSER2Q86WR7 435 aaPredicted RBP16.84■□□□□ 0.29
DEPDC4-202ENST00000378244 PTPRUQ92729 1446 aa16.83■□□□□ 0.29
DEPDC4-202ENST00000378244 CERKQ8TCT0 537 aa16.83■□□□□ 0.28
DEPDC4-202ENST00000378244 STAC3Q96MF2 364 aa16.83■□□□□ 0.28
DEPDC4-202ENST00000378244 LTBP4Q8N2S1 1624 aa16.83■□□□□ 0.28
DEPDC4-202ENST00000378244 NRXN1Q9ULB1 1477 aa16.82■□□□□ 0.28
DEPDC4-202ENST00000378244 STRCP1A6NGW2 1772 aa16.81■□□□□ 0.28
DEPDC4-202ENST00000378244 NBPF1Q3BBV0 1214 aa16.81■□□□□ 0.28
DEPDC4-202ENST00000378244 DIP2AQ14689 1571 aa16.8■□□□□ 0.28
DEPDC4-202ENST00000378244 NBPF8Q3BBV2 869 aa16.8■□□□□ 0.28
DEPDC4-202ENST00000378244 C14orf37Q86TY3 774 aa16.8■□□□□ 0.28
DEPDC4-202ENST00000378244 PIK3R4Q99570 1358 aa16.8■□□□□ 0.28
DEPDC4-202ENST00000378244 PRAG1Q86YV5 1406 aa16.8■□□□□ 0.28
DEPDC4-202ENST00000378244 TMEM94Q12767 1356 aa16.79■□□□□ 0.28
DEPDC4-202ENST00000378244 TRAK1Q9UPV9 953 aa16.78■□□□□ 0.28
DEPDC4-202ENST00000378244 LRRC7Q96NW7 1537 aa16.77■□□□□ 0.28
DEPDC4-202ENST00000378244 SAFB2Q14151 953 aaKnown RBP eCLIP16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 WAPLQ7Z5K2 1190 aa16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 CPS1P31327 1500 aa16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 CHD2O14647 1828 aaKnown RBP16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 ROBO2Q9HCK4 1378 aa16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 ASXL1Q8IXJ9 1541 aa16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 SETD1AO15047 1707 aaKnown RBP16.76■□□□□ 0.27
DEPDC4-202ENST00000378244 YTHDC2Q9H6S0 1430 aaKnown RBP16.75■□□□□ 0.27
DEPDC4-202ENST00000378244 LRPPRCP42704 1394 aaKnown RBP16.73■□□□□ 0.27
DEPDC4-202ENST00000378244 NKTRP30414 1462 aaKnown RBP16.73■□□□□ 0.27
DEPDC4-202ENST00000378244 NWD1Q149M9 1564 aa16.73■□□□□ 0.27
DEPDC4-202ENST00000378244 PRAM1Q96QH2 718 aa16.72■□□□□ 0.27
DEPDC4-202ENST00000378244 ROCK2O75116 1388 aaKnown RBP16.72■□□□□ 0.27
DEPDC4-202ENST00000378244 UBAP1LF5GYI3 381 aa16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 TIMELESSQ9UNS1 1208 aa16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 ABCC11Q96J66 1382 aa16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 ADGRB1O14514 1584 aa16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 PLEKHH1Q9ULM0 1364 aa16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 POGKQ9P215 609 aa16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 SCAF1Q9H7N4 1312 aaKnown RBP16.71■□□□□ 0.27
DEPDC4-202ENST00000378244 XRN1Q8IZH2 1706 aaKnown RBP16.7■□□□□ 0.26
DEPDC4-202ENST00000378244 LAMC1P11047 1609 aa16.7■□□□□ 0.26
DEPDC4-202ENST00000378244 PIP4K2BP78356 416 aa16.69■□□□□ 0.26
DEPDC4-202ENST00000378244 CARD11Q9BXL7 1154 aa16.69■□□□□ 0.26
DEPDC4-202ENST00000378244 HIRIP3Q9BW71 556 aaPredicted RBP16.68■□□□□ 0.26
DEPDC4-202ENST00000378244 C19orf44Q9H6X5 657 aa16.68■□□□□ 0.26
DEPDC4-202ENST00000378244 MSH6P52701 1360 aa16.68■□□□□ 0.26
DEPDC4-202ENST00000378244 PTCH1Q13635 1447 aa16.67■□□□□ 0.26
DEPDC4-202ENST00000378244 NUTM2FA1L443 756 aa16.67■□□□□ 0.26
DEPDC4-202ENST00000378244 ATF3P18847 181 aa16.66■□□□□ 0.26
DEPDC4-202ENST00000378244 TECPR2O15040 1411 aa16.66■□□□□ 0.26
DEPDC4-202ENST00000378244 TOM1O60784 492 aa16.65■□□□□ 0.26
DEPDC4-202ENST00000378244 MINK1Q8N4C8 1332 aaPredicted RBP16.65■□□□□ 0.26
DEPDC4-202ENST00000378244 TRPM1Q7Z4N2 1603 aa16.65■□□□□ 0.26
DEPDC4-202ENST00000378244 XIRP1Q702N8 1843 aaKnown RBP16.65■□□□□ 0.26
DEPDC4-202ENST00000378244 KIAA1210Q9ULL0 1709 aa16.63■□□□□ 0.25
DEPDC4-202ENST00000378244 FAM135BQ49AJ0 1406 aa16.62■□□□□ 0.25
DEPDC4-202ENST00000378244 ADGRL3Q9HAR2 1447 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms