RNA–Protein interactions for RNA: ENST00000377808.8

SMARCE1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,307 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-203ENST00000377808 NUTM2DQ5VT03 806 aaPredicted RBP17.32■□□□□ 0.36
SMARCE1-203ENST00000377808 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
SMARCE1-203ENST00000377808 SLC26A8Q96RN1 970 aa17.31■□□□□ 0.36
SMARCE1-203ENST00000377808 PHF23Q9BUL5 403 aaPredicted RBP17.31■□□□□ 0.36
SMARCE1-203ENST00000377808 SLC4A1APQ9BWU0 796 aaKnown RBP17.31■□□□□ 0.36
SMARCE1-203ENST00000377808 ZNF326Q5BKZ1 582 aaKnown RBP17.29■□□□□ 0.36
SMARCE1-203ENST00000377808 ZFYVE9O95405 1425 aa17.29■□□□□ 0.36
SMARCE1-203ENST00000377808 STRCP1A6NGW2 1772 aa17.29■□□□□ 0.36
SMARCE1-203ENST00000377808 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.28■□□□□ 0.36
SMARCE1-203ENST00000377808 PIP4K2BP78356 416 aa17.27■□□□□ 0.36
SMARCE1-203ENST00000377808 TRPM2O94759 1503 aa17.26■□□□□ 0.35
SMARCE1-203ENST00000377808 LRRC7Q96NW7 1537 aa17.26■□□□□ 0.35
SMARCE1-203ENST00000377808 PLEKHG1Q9ULL1 1385 aa17.26■□□□□ 0.35
SMARCE1-203ENST00000377808 TOM1O60784 492 aa17.25■□□□□ 0.35
SMARCE1-203ENST00000377808 CLTCL1P53675 1640 aa17.25■□□□□ 0.35
SMARCE1-203ENST00000377808 FOXD1Q16676 465 aa17.23■□□□□ 0.35
SMARCE1-203ENST00000377808 SETD5Q9C0A6 1442 aa17.22■□□□□ 0.35
SMARCE1-203ENST00000377808 KCNA6P17658 529 aa17.21■□□□□ 0.35
SMARCE1-203ENST00000377808 KIF1BO60333 1816 aa17.2■□□□□ 0.34
SMARCE1-203ENST00000377808 PROSER2Q86WR7 435 aaPredicted RBP17.2■□□□□ 0.34
SMARCE1-203ENST00000377808 RBM33Q96EV2 1170 aaKnown RBP17.2■□□□□ 0.34
SMARCE1-203ENST00000377808 MPHOSPH9Q99550 1183 aa17.2■□□□□ 0.34
SMARCE1-203ENST00000377808 TMEM94Q12767 1356 aa17.18■□□□□ 0.34
SMARCE1-203ENST00000377808 RAB3GAP2Q9H2M9 1393 aa17.17■□□□□ 0.34
SMARCE1-203ENST00000377808 TBX22Q9Y458 520 aa17.17■□□□□ 0.34
SMARCE1-203ENST00000377808 NWD1Q149M9 1564 aa17.16■□□□□ 0.34
SMARCE1-203ENST00000377808 ADAMTS13Q76LX8 1427 aa17.16■□□□□ 0.34
SMARCE1-203ENST00000377808 DIP2AQ14689 1571 aa17.15■□□□□ 0.34
SMARCE1-203ENST00000377808 NKTRP30414 1462 aaKnown RBP17.15■□□□□ 0.34
SMARCE1-203ENST00000377808 CCDC144AA2RUR9 1427 aa17.15■□□□□ 0.34
SMARCE1-203ENST00000377808 ACIN1Q9UKV3 1341 aaKnown RBP17.14■□□□□ 0.33
SMARCE1-203ENST00000377808 NEXMIFQ5QGS0 1516 aa17.14■□□□□ 0.33
SMARCE1-203ENST00000377808 XIRP1Q702N8 1843 aaKnown RBP17.14■□□□□ 0.33
SMARCE1-203ENST00000377808 C14orf37Q86TY3 774 aa17.13■□□□□ 0.33
SMARCE1-203ENST00000377808 ALKQ9UM73 1620 aa17.12■□□□□ 0.33
SMARCE1-203ENST00000377808 CHD2O14647 1828 aaKnown RBP17.12■□□□□ 0.33
SMARCE1-203ENST00000377808 HSPA1LP34931 641 aa17.12■□□□□ 0.33
SMARCE1-203ENST00000377808 SETBP1Q9Y6X0 1596 aa17.11■□□□□ 0.33
SMARCE1-203ENST00000377808 MSH6P52701 1360 aa17.11■□□□□ 0.33
SMARCE1-203ENST00000377808 RGL3Q3MIN7 710 aa17.1■□□□□ 0.33
SMARCE1-203ENST00000377808 AMOTL2Q9Y2J4 779 aa17.1■□□□□ 0.33
SMARCE1-203ENST00000377808 PIK3R4Q99570 1358 aa17.1■□□□□ 0.33
SMARCE1-203ENST00000377808 NRXN3Q9Y4C0 1643 aa17.09■□□□□ 0.33
SMARCE1-203ENST00000377808 VGFO15240 615 aaPredicted RBP17.09■□□□□ 0.33
SMARCE1-203ENST00000377808 RPGRIP1LQ68CZ1 1315 aa17.07■□□□□ 0.32
SMARCE1-203ENST00000377808 PTPRUQ92729 1446 aa17.06■□□□□ 0.32
SMARCE1-203ENST00000377808 METP08581 1390 aa17.06■□□□□ 0.32
SMARCE1-203ENST00000377808 DISP3Q9P2K9 1392 aa17.06■□□□□ 0.32
SMARCE1-203ENST00000377808 PPLO60437 1756 aa17.05■□□□□ 0.32
SMARCE1-203ENST00000377808 SPATA31E1Q6ZUB1 1445 aa17.02■□□□□ 0.32
SMARCE1-203ENST00000377808 ATF3P18847 181 aa17.01■□□□□ 0.31
SMARCE1-203ENST00000377808 XRN1Q8IZH2 1706 aaKnown RBP17.01■□□□□ 0.31
SMARCE1-203ENST00000377808 NCOA3Q9Y6Q9 1424 aa17■□□□□ 0.31
SMARCE1-203ENST00000377808 ROBO1Q9Y6N7 1651 aa17■□□□□ 0.31
SMARCE1-203ENST00000377808 ADGRF5Q8IZF2 1346 aa17■□□□□ 0.31
SMARCE1-203ENST00000377808 C19orf44Q9H6X5 657 aa16.99■□□□□ 0.31
SMARCE1-203ENST00000377808 SLAIN2Q9P270 581 aa16.99■□□□□ 0.31
SMARCE1-203ENST00000377808 ANKRD30BQ9BXX2 1392 aa16.99■□□□□ 0.31
SMARCE1-203ENST00000377808 FAM135BQ49AJ0 1406 aa16.99■□□□□ 0.31
SMARCE1-203ENST00000377808 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.98■□□□□ 0.31
SMARCE1-203ENST00000377808 HRCP23327 699 aa16.97■□□□□ 0.31
SMARCE1-203ENST00000377808 CADPS2Q86UW7 1296 aa16.97■□□□□ 0.31
SMARCE1-203ENST00000377808 SETD1AO15047 1707 aaKnown RBP16.96■□□□□ 0.31
SMARCE1-203ENST00000377808 IFT172Q9UG01 1749 aa16.96■□□□□ 0.31
SMARCE1-203ENST00000377808 STK26Q9P289 416 aa16.94■□□□□ 0.3
SMARCE1-203ENST00000377808 MED1Q15648 1581 aaPredicted RBP16.93■□□□□ 0.3
SMARCE1-203ENST00000377808 PTCH1Q13635 1447 aa16.93■□□□□ 0.3
SMARCE1-203ENST00000377808 ROBO2Q9HCK4 1378 aa16.93■□□□□ 0.3
SMARCE1-203ENST00000377808 PIK3C2GO75747 1445 aa16.92■□□□□ 0.3
SMARCE1-203ENST00000377808 ADGRL3Q9HAR2 1447 aa16.92■□□□□ 0.3
SMARCE1-203ENST00000377808 DCCP43146 1447 aa16.91■□□□□ 0.3
SMARCE1-203ENST00000377808 TMEM132EQ6IEE7 984 aa16.91■□□□□ 0.3
SMARCE1-203ENST00000377808 PHLPP1O60346 1717 aa16.91■□□□□ 0.3
SMARCE1-203ENST00000377808 NALCNQ8IZF0 1738 aa16.91■□□□□ 0.3
SMARCE1-203ENST00000377808 KDM2AQ9Y2K7 1162 aa16.9■□□□□ 0.3
SMARCE1-203ENST00000377808 MYOM2P54296 1465 aa16.89■□□□□ 0.29
SMARCE1-203ENST00000377808 DCAF11Q8TEB1 546 aa16.88■□□□□ 0.29
SMARCE1-203ENST00000377808 CFAP70Q5T0N1 1121 aa16.87■□□□□ 0.29
SMARCE1-203ENST00000377808 BRINP3Q76B58 766 aa16.87■□□□□ 0.29
SMARCE1-203ENST00000377808 MST1RQ04912 1400 aa16.87■□□□□ 0.29
SMARCE1-203ENST00000377808 LRPPRCP42704 1394 aaKnown RBP16.86■□□□□ 0.29
SMARCE1-203ENST00000377808 ASXL1Q8IXJ9 1541 aa16.86■□□□□ 0.29
SMARCE1-203ENST00000377808 ILDR2Q71H61 639 aa16.85■□□□□ 0.29
SMARCE1-203ENST00000377808 WAPLQ7Z5K2 1190 aa16.85■□□□□ 0.29
SMARCE1-203ENST00000377808 YTHDC2Q9H6S0 1430 aaKnown RBP16.85■□□□□ 0.29
SMARCE1-203ENST00000377808 C14orf93Q9H972 538 aaKnown RBP16.85■□□□□ 0.29
SMARCE1-203ENST00000377808 NRXN1Q9ULB1 1477 aa16.84■□□□□ 0.29
SMARCE1-203ENST00000377808 PRAG1Q86YV5 1406 aa16.84■□□□□ 0.29
SMARCE1-203ENST00000377808 LAMC1P11047 1609 aa16.84■□□□□ 0.29
SMARCE1-203ENST00000377808 DHX57Q6P158 1386 aaKnown RBP16.83■□□□□ 0.28
SMARCE1-203ENST00000377808 JCADQ9P266 1359 aa16.83■□□□□ 0.28
SMARCE1-203ENST00000377808 COL16A1Q07092 1604 aaPredicted RBP16.82■□□□□ 0.28
SMARCE1-203ENST00000377808 AHDC1Q5TGY3 1603 aaPredicted RBP16.82■□□□□ 0.28
SMARCE1-203ENST00000377808 KNDC1Q76NI1 1749 aa16.82■□□□□ 0.28
SMARCE1-203ENST00000377808 ABCC11Q96J66 1382 aa16.82■□□□□ 0.28
SMARCE1-203ENST00000377808 PLEKHH1Q9ULM0 1364 aa16.82■□□□□ 0.28
SMARCE1-203ENST00000377808 TECPR2O15040 1411 aa16.81■□□□□ 0.28
SMARCE1-203ENST00000377808 C1orf167Q5SNV9 1468 aa16.81■□□□□ 0.28
SMARCE1-203ENST00000377808 SAFB2Q14151 953 aaKnown RBP eCLIP16.8■□□□□ 0.28
SMARCE1-203ENST00000377808 DDX17Q92841 729 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms