RNA–Protein interactions for RNA: ENST00000377349.6

CBWD3-204, Transcript of COBW domain containing 3, humanhuman

TSL 2

Gene CBWD3, Length 1,403 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-204ENST00000377349 KCNA6P17658 529 aa29.65■■■□□ 2.34
CBWD3-204ENST00000377349 SLC26A8Q96RN1 970 aa29.65■■■□□ 2.34
CBWD3-204ENST00000377349 CHD2O14647 1828 aaKnown RBP29.65■■■□□ 2.34
CBWD3-204ENST00000377349 NKTRP30414 1462 aaKnown RBP29.61■■■□□ 2.33
CBWD3-204ENST00000377349 IQGAP3Q86VI3 1631 aa29.61■■■□□ 2.33
CBWD3-204ENST00000377349 FAM135BQ49AJ0 1406 aa29.6■■■□□ 2.33
CBWD3-204ENST00000377349 ROBO1Q9Y6N7 1651 aa29.59■■■□□ 2.33
CBWD3-204ENST00000377349 ROCK1Q13464 1354 aa29.59■■■□□ 2.33
CBWD3-204ENST00000377349 RIMS2Q9UQ26 1411 aa29.56■■■□□ 2.32
CBWD3-204ENST00000377349 RBM33Q96EV2 1170 aaKnown RBP29.56■■■□□ 2.32
CBWD3-204ENST00000377349 PLEKHG1Q9ULL1 1385 aa29.56■■■□□ 2.32
CBWD3-204ENST00000377349 PROSER2Q86WR7 435 aaPredicted RBP29.54■■■□□ 2.32
CBWD3-204ENST00000377349 PHF23Q9BUL5 403 aaPredicted RBP29.54■■■□□ 2.32
CBWD3-204ENST00000377349 RGS17Q9UGC6 210 aaPredicted RBP29.47■■■□□ 2.31
CBWD3-204ENST00000377349 ADAMTS13Q76LX8 1427 aa29.46■■■□□ 2.31
CBWD3-204ENST00000377349 PPARGC1BQ86YN6 1023 aaKnown RBP29.45■■■□□ 2.31
CBWD3-204ENST00000377349 BCANQ96GW7 911 aa29.45■■■□□ 2.31
CBWD3-204ENST00000377349 DIP2AQ14689 1571 aa29.43■■■□□ 2.3
CBWD3-204ENST00000377349 MSH6P52701 1360 aa29.43■■■□□ 2.3
CBWD3-204ENST00000377349 SPHKAPQ2M3C7 1700 aa29.42■■■□□ 2.3
CBWD3-204ENST00000377349 PPP1R15AO75807 674 aaPredicted RBP29.42■■■□□ 2.3
CBWD3-204ENST00000377349 TBX22Q9Y458 520 aa29.42■■■□□ 2.3
CBWD3-204ENST00000377349 PHLPP1O60346 1717 aa29.42■■■□□ 2.3
CBWD3-204ENST00000377349 NUP155O75694 1391 aa29.41■■■□□ 2.3
CBWD3-204ENST00000377349 HDGFP51858 240 aaKnown RBP29.4■■■□□ 2.3
CBWD3-204ENST00000377349 CHGAP10645 457 aaKnown RBP29.38■■■□□ 2.29
CBWD3-204ENST00000377349 NUTM2DQ5VT03 806 aaPredicted RBP29.38■■■□□ 2.29
CBWD3-204ENST00000377349 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.38■■■□□ 2.29
CBWD3-204ENST00000377349 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.38■■■□□ 2.29
CBWD3-204ENST00000377349 NRXN3Q9Y4C0 1643 aa29.37■■■□□ 2.29
CBWD3-204ENST00000377349 ITGAEP38570 1179 aa29.36■■■□□ 2.29
CBWD3-204ENST00000377349 SLAIN2Q9P270 581 aa29.36■■■□□ 2.29
CBWD3-204ENST00000377349 NCOA3Q9Y6Q9 1424 aa29.36■■■□□ 2.29
CBWD3-204ENST00000377349 COL16A1Q07092 1604 aaPredicted RBP29.34■■■□□ 2.29
CBWD3-204ENST00000377349 PIK3R4Q99570 1358 aa29.33■■■□□ 2.29
CBWD3-204ENST00000377349 TRPM2O94759 1503 aa29.32■■■□□ 2.28
CBWD3-204ENST00000377349 PTPRUQ92729 1446 aa29.31■■■□□ 2.28
CBWD3-204ENST00000377349 XRN1Q8IZH2 1706 aaKnown RBP29.3■■■□□ 2.28
CBWD3-204ENST00000377349 SETBP1Q9Y6X0 1596 aa29.28■■■□□ 2.28
CBWD3-204ENST00000377349 CLTCL1P53675 1640 aa29.26■■■□□ 2.27
CBWD3-204ENST00000377349 POTEAQ6S8J7 498 aa29.25■■■□□ 2.27
CBWD3-204ENST00000377349 AHDC1Q5TGY3 1603 aaPredicted RBP29.24■■■□□ 2.27
CBWD3-204ENST00000377349 RRBP1Q9P2E9 1410 aaKnown RBP29.24■■■□□ 2.27
CBWD3-204ENST00000377349 JCADQ9P266 1359 aa29.23■■■□□ 2.27
CBWD3-204ENST00000377349 KIF1BO60333 1816 aa29.21■■■□□ 2.27
CBWD3-204ENST00000377349 NEXMIFQ5QGS0 1516 aa29.2■■■□□ 2.27
CBWD3-204ENST00000377349 C19orf44Q9H6X5 657 aa29.2■■■□□ 2.27
CBWD3-204ENST00000377349 AMOTL2Q9Y2J4 779 aa29.2■■■□□ 2.27
CBWD3-204ENST00000377349 SHPRHQ149N8 1683 aa29.18■■■□□ 2.26
CBWD3-204ENST00000377349 NAIPQ13075 1403 aa29.18■■■□□ 2.26
CBWD3-204ENST00000377349 C14orf37Q86TY3 774 aa29.18■■■□□ 2.26
CBWD3-204ENST00000377349 CADPS2Q86UW7 1296 aa29.18■■■□□ 2.26
CBWD3-204ENST00000377349 LRP6O75581 1613 aa29.17■■■□□ 2.26
CBWD3-204ENST00000377349 METP08581 1390 aa29.15■■■□□ 2.26
CBWD3-204ENST00000377349 SETD1AO15047 1707 aaKnown RBP29.14■■■□□ 2.26
CBWD3-204ENST00000377349 DCCP43146 1447 aa29.14■■■□□ 2.26
CBWD3-204ENST00000377349 ATF3P18847 181 aa29.13■■■□□ 2.25
CBWD3-204ENST00000377349 NALCNQ8IZF0 1738 aa29.11■■■□□ 2.25
CBWD3-204ENST00000377349 NHSL1Q5SYE7 1610 aa29.1■■■□□ 2.25
CBWD3-204ENST00000377349 ZNF326Q5BKZ1 582 aaKnown RBP29.1■■■□□ 2.25
CBWD3-204ENST00000377349 BRINP3Q76B58 766 aa29.09■■■□□ 2.25
CBWD3-204ENST00000377349 ASXL1Q8IXJ9 1541 aa29.08■■■□□ 2.25
CBWD3-204ENST00000377349 MST1RQ04912 1400 aa29.08■■■□□ 2.25
CBWD3-204ENST00000377349 SPATA31A6Q5VVP1 1343 aa29.08■■■□□ 2.24
CBWD3-204ENST00000377349 HFM1A2PYH4 1435 aa29.04■■■□□ 2.24
CBWD3-204ENST00000377349 ADGRL3Q9HAR2 1447 aa29.03■■■□□ 2.24
CBWD3-204ENST00000377349 PPLO60437 1756 aa29.02■■■□□ 2.24
CBWD3-204ENST00000377349 SETD5Q9C0A6 1442 aa28.98■■■□□ 2.23
CBWD3-204ENST00000377349 PTCH1Q13635 1447 aa28.95■■■□□ 2.22
CBWD3-204ENST00000377349 PRAG1Q86YV5 1406 aa28.94■■■□□ 2.22
CBWD3-204ENST00000377349 LAMC1P11047 1609 aa28.94■■■□□ 2.22
CBWD3-204ENST00000377349 MEX3CQ5U5Q3 659 aaKnown RBP28.91■■■□□ 2.22
CBWD3-204ENST00000377349 TRIM52Q96A61 297 aa28.91■■■□□ 2.22
CBWD3-204ENST00000377349 ROBO2Q9HCK4 1378 aa28.91■■■□□ 2.22
CBWD3-204ENST00000377349 ZNF772Q68DY9 489 aaPredicted RBP28.89■■■□□ 2.22
CBWD3-204ENST00000377349 C1orf167Q5SNV9 1468 aa28.89■■■□□ 2.21
CBWD3-204ENST00000377349 VGFO15240 615 aaPredicted RBP28.88■■■□□ 2.21
CBWD3-204ENST00000377349 DDX17Q92841 729 aaKnown RBP28.88■■■□□ 2.21
CBWD3-204ENST00000377349 SLC4A1APQ9BWU0 796 aaKnown RBP28.87■■■□□ 2.21
CBWD3-204ENST00000377349 IFT172Q9UG01 1749 aa28.86■■■□□ 2.21
CBWD3-204ENST00000377349 RPGRIP1LQ68CZ1 1315 aa28.86■■■□□ 2.21
CBWD3-204ENST00000377349 PNPLA6Q8IY17 1366 aa28.86■■■□□ 2.21
CBWD3-204ENST00000377349 NUTM2BA6NNL0 878 aaPredicted RBP28.85■■■□□ 2.21
CBWD3-204ENST00000377349 NUTM2EB1AL46 878 aaPredicted RBP28.85■■■□□ 2.21
CBWD3-204ENST00000377349 NUTM2AQ8IVF1 878 aaPredicted RBP28.85■■■□□ 2.21
CBWD3-204ENST00000377349 LRRC59Q96AG4 307 aaKnown RBP28.83■■■□□ 2.21
CBWD3-204ENST00000377349 FOXD1Q16676 465 aa28.81■■■□□ 2.2
CBWD3-204ENST00000377349 AFF2P51816 1311 aa28.79■■■□□ 2.2
CBWD3-204ENST00000377349 CDK12Q9NYV4 1490 aaPredicted RBP28.78■■■□□ 2.2
CBWD3-204ENST00000377349 SPATA31E1Q6ZUB1 1445 aa28.77■■■□□ 2.2
CBWD3-204ENST00000377349 ORAI2Q96SN7 254 aa28.77■■■□□ 2.2
CBWD3-204ENST00000377349 CDC42BPGQ6DT37 1551 aa28.76■■■□□ 2.19
CBWD3-204ENST00000377349 RXRBP28702 533 aa28.75■■■□□ 2.19
CBWD3-204ENST00000377349 SOS2Q07890 1332 aaPredicted RBP28.75■■■□□ 2.19
CBWD3-204ENST00000377349 ADGRF5Q8IZF2 1346 aa28.74■■■□□ 2.19
CBWD3-204ENST00000377349 KNDC1Q76NI1 1749 aa28.73■■■□□ 2.19
CBWD3-204ENST00000377349 UPF1Q92900 1129 aaKnown RBP eCLIP28.73■■■□□ 2.19
CBWD3-204ENST00000377349 COL22A1Q8NFW1 1626 aaPredicted RBP28.73■■■□□ 2.19
CBWD3-204ENST00000377349 CCDC144AA2RUR9 1427 aa28.72■■■□□ 2.19
CBWD3-204ENST00000377349 TECPR2O15040 1411 aa28.7■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms