RNA–Protein interactions for RNA: ENST00000374481.7

CD28-202, Transcript of CD28 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD28, Length 4,526 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD28-202ENST00000374481 TPM3P06753 285 aa12.54□□□□□ -0.4
CD28-202ENST00000374481 TSPY26PQ9H489 355 aa12.53□□□□□ -0.4
CD28-202ENST00000374481 EIF3AQ14152 1382 aaKnown RBP12.53□□□□□ -0.4
CD28-202ENST00000374481 SYNJ1O43426 1573 aa12.52□□□□□ -0.4
CD28-202ENST00000374481 PATL2C9JE40 543 aaKnown RBP12.52□□□□□ -0.4
CD28-202ENST00000374481 SMC4Q9NTJ3 1288 aa12.52□□□□□ -0.4
CD28-202ENST00000374481 CHMP7Q8WUX9 453 aaPredicted RBP12.52□□□□□ -0.41
CD28-202ENST00000374481 ATAD2BQ9ULI0 1458 aa12.52□□□□□ -0.41
CD28-202ENST00000374481 ST20-MTHFSA0A0A6YYL1 179 aa12.52□□□□□ -0.41
CD28-202ENST00000374481 PANK1Q8TE04 598 aa12.52□□□□□ -0.41
CD28-202ENST00000374481 IPO4Q8TEX9 1081 aaKnown RBP12.52□□□□□ -0.41
CD28-202ENST00000374481 TERF1P54274 439 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 USP47Q96K76 1375 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 RRBP1Q9P2E9 1410 aaKnown RBP12.51□□□□□ -0.41
CD28-202ENST00000374481 CCDC112Q8NEF3 446 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 PRIMPOLQ96LW4 560 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 DEF6Q9H4E7 631 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 PDZRN3Q9UPQ7 1066 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 APBB1O00213 710 aa12.51□□□□□ -0.41
CD28-202ENST00000374481 GNL2Q13823 731 aaKnown RBP12.51□□□□□ -0.41
CD28-202ENST00000374481 CCDC18Q5T9S5 1454 aa12.5□□□□□ -0.41
CD28-202ENST00000374481 TPD52L1Q16890 204 aaPredicted RBP12.49□□□□□ -0.41
CD28-202ENST00000374481 NPHP1O15259 732 aa12.49□□□□□ -0.41
CD28-202ENST00000374481 TNPO1Q92973 898 aaKnown RBP12.49□□□□□ -0.41
CD28-202ENST00000374481 APAF1O14727 1248 aa12.49□□□□□ -0.41
CD28-202ENST00000374481 ANKRD45Q5TZF3 282 aa12.49□□□□□ -0.41
CD28-202ENST00000374481 CCAR2Q8N163 923 aaKnown RBP12.48□□□□□ -0.41
CD28-202ENST00000374481 GOLGA6L19H0YKK7 550 aa12.48□□□□□ -0.41
CD28-202ENST00000374481 C20orf194Q5TEA3 1177 aa12.48□□□□□ -0.41
CD28-202ENST00000374481 ZKSCAN5Q9Y2L8 839 aa12.48□□□□□ -0.41
CD28-202ENST00000374481 C8orf34Q49A92 452 aa12.47□□□□□ -0.41
CD28-202ENST00000374481 PKD2Q13563 968 aa12.47□□□□□ -0.41
CD28-202ENST00000374481 ZKSCAN2Q63HK3 967 aa12.47□□□□□ -0.41
CD28-202ENST00000374481 ATP6V1DQ9Y5K8 247 aa12.47□□□□□ -0.41
CD28-202ENST00000374481 GPATCH11Q8N954 259 aa12.46□□□□□ -0.41
CD28-202ENST00000374481 MNS1Q8NEH6 495 aa12.46□□□□□ -0.41
CD28-202ENST00000374481 K7ELQ4 463 aaPredicted RBP12.46□□□□□ -0.42
CD28-202ENST00000374481 SPC24Q8NBT2 197 aa12.46□□□□□ -0.42
CD28-202ENST00000374481 SYCE3A1L190 88 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 HS1BP3Q53T59 392 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 LEKR1Q6ZMV7 388 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 HOMER1Q86YM7 354 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 LNPKQ9C0E8 428 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 TRIM6-TRIM34B2RNG4 842 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 DMTNQ08495 405 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 AK7Q96M32 723 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 TRIM34Q9BYJ4 488 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 PANK3Q9H999 370 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 BECN2A8MW95 431 aa12.45□□□□□ -0.42
CD28-202ENST00000374481 UACAQ9BZF9 1416 aa12.44□□□□□ -0.42
CD28-202ENST00000374481 GTF2A1P52655 376 aaPredicted RBP12.44□□□□□ -0.42
CD28-202ENST00000374481 TPM4P67936 248 aa12.44□□□□□ -0.42
CD28-202ENST00000374481 PDE3AQ14432 1141 aa12.44□□□□□ -0.42
CD28-202ENST00000374481 UTP14CQ5TAP6 766 aaKnown RBP12.44□□□□□ -0.42
CD28-202ENST00000374481 CYB5RLQ6IPT4 315 aa12.43□□□□□ -0.42
CD28-202ENST00000374481 ESF1Q9H501 851 aaKnown RBP12.43□□□□□ -0.42
CD28-202ENST00000374481 CHGAP10645 457 aaKnown RBP12.43□□□□□ -0.42
CD28-202ENST00000374481 TBC1D32Q96NH3 1257 aa12.43□□□□□ -0.42
CD28-202ENST00000374481 GTF2F1P35269 517 aaKnown RBP eCLIP12.42□□□□□ -0.42
CD28-202ENST00000374481 KLHL40Q2TBA0 621 aa12.42□□□□□ -0.42
CD28-202ENST00000374481 ADAMTS8Q9UP79 889 aa12.42□□□□□ -0.42
CD28-202ENST00000374481 BCAR3O75815 825 aa12.42□□□□□ -0.42
CD28-202ENST00000374481 MORC1Q86VD1 984 aa12.42□□□□□ -0.42
CD28-202ENST00000374481 DZIP1LQ8IYY4 767 aaKnown RBP12.42□□□□□ -0.42
CD28-202ENST00000374481 FAM184AQ8NB25 1140 aa12.42□□□□□ -0.42
CD28-202ENST00000374481 DDX19BQ9UMR2 479 aa12.42□□□□□ -0.42
CD28-202ENST00000374481 RRP7AQ9Y3A4 280 aaKnown RBP12.41□□□□□ -0.42
CD28-202ENST00000374481 CUX2O14529 1486 aa12.41□□□□□ -0.42
CD28-202ENST00000374481 HSP90B2PQ58FF3 399 aa12.41□□□□□ -0.42
CD28-202ENST00000374481 CHMP3Q9Y3E7 222 aa12.41□□□□□ -0.42
CD28-202ENST00000374481 TRIM5Q9C035 493 aa12.41□□□□□ -0.42
CD28-202ENST00000374481 REC8O95072 547 aa12.4□□□□□ -0.42
CD28-202ENST00000374481 KRT222Q8N1A0 295 aa12.4□□□□□ -0.42
CD28-202ENST00000374481 SSFA2P28290 1259 aa12.4□□□□□ -0.42
CD28-202ENST00000374481 NOL7Q9UMY1 257 aaKnown RBP12.4□□□□□ -0.42
CD28-202ENST00000374481 RDXP35241 583 aaKnown RBP12.4□□□□□ -0.43
CD28-202ENST00000374481 U2AF1L5P0DN76 240 aaPredicted RBP12.39□□□□□ -0.43
CD28-202ENST00000374481 U2AF1Q01081 240 aaKnown RBP eCLIP12.39□□□□□ -0.43
CD28-202ENST00000374481 RABEP1Q15276 862 aa12.39□□□□□ -0.43
CD28-202ENST00000374481 CFDP1Q9UEE9 299 aaPredicted RBP12.39□□□□□ -0.43
CD28-202ENST00000374481 NOLC1Q14978 699 aaKnown RBP eCLIP12.39□□□□□ -0.43
CD28-202ENST00000374481 FEZ1Q99689 392 aa12.39□□□□□ -0.43
CD28-202ENST00000374481 CWC22Q9HCG8 908 aaKnown RBP12.39□□□□□ -0.43
CD28-202ENST00000374481 H0YHG0 523 aa12.39□□□□□ -0.43
CD28-202ENST00000374481 NGEFQ8N5V2 710 aa12.38□□□□□ -0.43
CD28-202ENST00000374481 ERICH3Q5RHP9 1530 aa12.38□□□□□ -0.43
CD28-202ENST00000374481 NOL10Q9BSC4 688 aaKnown RBP12.37□□□□□ -0.43
CD28-202ENST00000374481 NOC3LQ8WTT2 800 aaKnown RBP12.37□□□□□ -0.43
CD28-202ENST00000374481 OGFRQ9NZT2 677 aa12.37□□□□□ -0.43
CD28-202ENST00000374481 ARAP1Q96P48 1450 aa12.37□□□□□ -0.43
CD28-202ENST00000374481 FAM177BA6PVY3 158 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 USP8P40818 1118 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 USP25Q9UHP3 1055 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 CDC45O75419 566 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 BAG4O95429 457 aaKnown RBP12.36□□□□□ -0.43
CD28-202ENST00000374481 GORABQ5T7V8 394 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 FSD2A1L4K1 749 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 TOP2BQ02880 1626 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 ZSCAN23Q3MJ62 389 aa12.36□□□□□ -0.43
CD28-202ENST00000374481 CARMIL1Q5VZK9 1371 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms