RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 CCDC144AA2RUR9 1427 aa22.27■■□□□ 1.16
SMPDL3A-201ENST00000368440 NEXMIFQ5QGS0 1516 aa22.25■■□□□ 1.15
SMPDL3A-201ENST00000368440 NUTM2DQ5VT03 806 aaPredicted RBP22.25■■□□□ 1.15
SMPDL3A-201ENST00000368440 LTBP4Q8N2S1 1624 aa22.24■■□□□ 1.15
SMPDL3A-201ENST00000368440 SENP3Q9H4L4 574 aaPredicted RBP22.24■■□□□ 1.15
SMPDL3A-201ENST00000368440 ZNF335Q9H4Z2 1342 aaPredicted RBP22.23■■□□□ 1.15
SMPDL3A-201ENST00000368440 ZNF326Q5BKZ1 582 aaKnown RBP22.23■■□□□ 1.15
SMPDL3A-201ENST00000368440 ANKRD30BQ9BXX2 1392 aa22.23■■□□□ 1.15
SMPDL3A-201ENST00000368440 STRCP1A6NGW2 1772 aa22.21■■□□□ 1.15
SMPDL3A-201ENST00000368440 PPLO60437 1756 aa22.21■■□□□ 1.15
SMPDL3A-201ENST00000368440 PLEKHG1Q9ULL1 1385 aa22.2■■□□□ 1.14
SMPDL3A-201ENST00000368440 SPATA31E1Q6ZUB1 1445 aa22.2■■□□□ 1.14
SMPDL3A-201ENST00000368440 PPP1R15AO75807 674 aaPredicted RBP22.2■■□□□ 1.14
SMPDL3A-201ENST00000368440 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.19■■□□□ 1.14
SMPDL3A-201ENST00000368440 IFT172Q9UG01 1749 aa22.19■■□□□ 1.14
SMPDL3A-201ENST00000368440 NRXN3Q9Y4C0 1643 aa22.18■■□□□ 1.14
SMPDL3A-201ENST00000368440 HDGFP51858 240 aaKnown RBP22.17■■□□□ 1.14
SMPDL3A-201ENST00000368440 SLC26A8Q96RN1 970 aa22.16■■□□□ 1.14
SMPDL3A-201ENST00000368440 RGL3Q3MIN7 710 aa22.14■■□□□ 1.13
SMPDL3A-201ENST00000368440 BCANQ96GW7 911 aa22.14■■□□□ 1.13
SMPDL3A-201ENST00000368440 ADAMTS13Q76LX8 1427 aa22.14■■□□□ 1.13
SMPDL3A-201ENST00000368440 SETBP1Q9Y6X0 1596 aa22.13■■□□□ 1.13
SMPDL3A-201ENST00000368440 DHX57Q6P158 1386 aaKnown RBP22.12■■□□□ 1.13
SMPDL3A-201ENST00000368440 PCGF6Q9BYE7 350 aa22.11■■□□□ 1.13
SMPDL3A-201ENST00000368440 DIP2AQ14689 1571 aa22.11■■□□□ 1.13
SMPDL3A-201ENST00000368440 CERKQ8TCT0 537 aa22.1■■□□□ 1.13
SMPDL3A-201ENST00000368440 RPGRIP1LQ68CZ1 1315 aa22.1■■□□□ 1.13
SMPDL3A-201ENST00000368440 CPS1P31327 1500 aa22.09■■□□□ 1.13
SMPDL3A-201ENST00000368440 CHD2O14647 1828 aaKnown RBP22.09■■□□□ 1.13
SMPDL3A-201ENST00000368440 SETD1AO15047 1707 aaKnown RBP22.08■■□□□ 1.13
SMPDL3A-201ENST00000368440 NWD1Q149M9 1564 aa22.08■■□□□ 1.13
SMPDL3A-201ENST00000368440 VGFO15240 615 aaPredicted RBP22.05■■□□□ 1.12
SMPDL3A-201ENST00000368440 TBX22Q9Y458 520 aa22.05■■□□□ 1.12
SMPDL3A-201ENST00000368440 ADGRF5Q8IZF2 1346 aa22.04■■□□□ 1.12
SMPDL3A-201ENST00000368440 XIRP1Q702N8 1843 aaKnown RBP22.04■■□□□ 1.12
SMPDL3A-201ENST00000368440 LRRC7Q96NW7 1537 aa22.04■■□□□ 1.12
SMPDL3A-201ENST00000368440 ALKQ9UM73 1620 aa22.03■■□□□ 1.12
SMPDL3A-201ENST00000368440 PTPRUQ92729 1446 aa22.01■■□□□ 1.11
SMPDL3A-201ENST00000368440 KCNA6P17658 529 aa22.01■■□□□ 1.11
SMPDL3A-201ENST00000368440 MYOM2P54296 1465 aa22.01■■□□□ 1.11
SMPDL3A-201ENST00000368440 IQSEC2Q5JU85 1478 aa22.01■■□□□ 1.11
SMPDL3A-201ENST00000368440 METP08581 1390 aa22■■□□□ 1.11
SMPDL3A-201ENST00000368440 XRN1Q8IZH2 1706 aaKnown RBP21.99■■□□□ 1.11
SMPDL3A-201ENST00000368440 PIK3C2GO75747 1445 aa21.99■■□□□ 1.11
SMPDL3A-201ENST00000368440 SIN3AQ96ST3 1273 aa21.98■■□□□ 1.11
SMPDL3A-201ENST00000368440 NKTRP30414 1462 aaKnown RBP21.98■■□□□ 1.11
SMPDL3A-201ENST00000368440 NRXN1Q9ULB1 1477 aa21.98■■□□□ 1.11
SMPDL3A-201ENST00000368440 PIK3R4Q99570 1358 aa21.98■■□□□ 1.11
SMPDL3A-201ENST00000368440 ASXL1Q8IXJ9 1541 aa21.95■■□□□ 1.1
SMPDL3A-201ENST00000368440 RBM33Q96EV2 1170 aaKnown RBP21.94■■□□□ 1.1
SMPDL3A-201ENST00000368440 DCAF11Q8TEB1 546 aa21.94■■□□□ 1.1
SMPDL3A-201ENST00000368440 AMOTL2Q9Y2J4 779 aa21.93■■□□□ 1.1
SMPDL3A-201ENST00000368440 KDM2AQ9Y2K7 1162 aa21.93■■□□□ 1.1
SMPDL3A-201ENST00000368440 TMEM94Q12767 1356 aa21.92■■□□□ 1.1
SMPDL3A-201ENST00000368440 LAMC1P11047 1609 aa21.92■■□□□ 1.1
SMPDL3A-201ENST00000368440 PROSER2Q86WR7 435 aaPredicted RBP21.92■■□□□ 1.1
SMPDL3A-201ENST00000368440 NEUROD1Q13562 356 aa21.91■■□□□ 1.1
SMPDL3A-201ENST00000368440 FBXO41Q8TF61 875 aa21.9■■□□□ 1.1
SMPDL3A-201ENST00000368440 CFAP70Q5T0N1 1121 aa21.88■■□□□ 1.09
SMPDL3A-201ENST00000368440 ILDR1Q86SU0 546 aaPredicted RBP21.88■■□□□ 1.09
SMPDL3A-201ENST00000368440 C14orf93Q9H972 538 aaKnown RBP21.86■■□□□ 1.09
SMPDL3A-201ENST00000368440 TMEM132EQ6IEE7 984 aa21.86■■□□□ 1.09
SMPDL3A-201ENST00000368440 UBAP1LF5GYI3 381 aa21.85■■□□□ 1.09
SMPDL3A-201ENST00000368440 KNDC1Q76NI1 1749 aa21.85■■□□□ 1.09
SMPDL3A-201ENST00000368440 L3MBTL2Q969R5 705 aa21.84■■□□□ 1.09
SMPDL3A-201ENST00000368440 PRAG1Q86YV5 1406 aa21.84■■□□□ 1.09
SMPDL3A-201ENST00000368440 ADGRB1O14514 1584 aa21.83■■□□□ 1.09
SMPDL3A-201ENST00000368440 PTCH1Q13635 1447 aa21.83■■□□□ 1.09
SMPDL3A-201ENST00000368440 ROBO2Q9HCK4 1378 aa21.83■■□□□ 1.09
SMPDL3A-201ENST00000368440 NALCNQ8IZF0 1738 aa21.83■■□□□ 1.08
SMPDL3A-201ENST00000368440 STAC3Q96MF2 364 aa21.82■■□□□ 1.08
SMPDL3A-201ENST00000368440 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.82■■□□□ 1.08
SMPDL3A-201ENST00000368440 YTHDC2Q9H6S0 1430 aaKnown RBP21.81■■□□□ 1.08
SMPDL3A-201ENST00000368440 LRPPRCP42704 1394 aaKnown RBP21.8■■□□□ 1.08
SMPDL3A-201ENST00000368440 STK26Q9P289 416 aa21.8■■□□□ 1.08
SMPDL3A-201ENST00000368440 NCOA3Q9Y6Q9 1424 aa21.8■■□□□ 1.08
SMPDL3A-201ENST00000368440 KIAA1210Q9ULL0 1709 aa21.8■■□□□ 1.08
SMPDL3A-201ENST00000368440 TECPR2O15040 1411 aa21.79■■□□□ 1.08
SMPDL3A-201ENST00000368440 MSH6P52701 1360 aa21.78■■□□□ 1.08
SMPDL3A-201ENST00000368440 TOM1O60784 492 aa21.77■■□□□ 1.08
SMPDL3A-201ENST00000368440 C14orf37Q86TY3 774 aa21.77■■□□□ 1.08
SMPDL3A-201ENST00000368440 ABCC11Q96J66 1382 aa21.76■■□□□ 1.07
SMPDL3A-201ENST00000368440 TONSLQ96HA7 1378 aa21.75■■□□□ 1.07
SMPDL3A-201ENST00000368440 TRPM1Q7Z4N2 1603 aa21.75■■□□□ 1.07
SMPDL3A-201ENST00000368440 PIP4K2BP78356 416 aa21.75■■□□□ 1.07
SMPDL3A-201ENST00000368440 ADGRL3Q9HAR2 1447 aa21.75■■□□□ 1.07
SMPDL3A-201ENST00000368440 PLEKHH1Q9ULM0 1364 aa21.74■■□□□ 1.07
SMPDL3A-201ENST00000368440 SCAF1Q9H7N4 1312 aaKnown RBP21.73■■□□□ 1.07
SMPDL3A-201ENST00000368440 WAPLQ7Z5K2 1190 aa21.72■■□□□ 1.07
SMPDL3A-201ENST00000368440 C19orf44Q9H6X5 657 aa21.72■■□□□ 1.07
SMPDL3A-201ENST00000368440 ARHGEF28Q8N1W1 1705 aaKnown RBP21.71■■□□□ 1.07
SMPDL3A-201ENST00000368440 DLC1Q96QB1 1528 aa21.71■■□□□ 1.07
SMPDL3A-201ENST00000368440 NBPF1Q3BBV0 1214 aa21.71■■□□□ 1.07
SMPDL3A-201ENST00000368440 DCCP43146 1447 aa21.7■■□□□ 1.06
SMPDL3A-201ENST00000368440 ROBO1Q9Y6N7 1651 aa21.69■■□□□ 1.06
SMPDL3A-201ENST00000368440 CCER1Q8TC90 406 aaPredicted RBP21.69■■□□□ 1.06
SMPDL3A-201ENST00000368440 CLSPNQ9HAW4 1339 aa21.69■■□□□ 1.06
SMPDL3A-201ENST00000368440 FAM135BQ49AJ0 1406 aa21.69■■□□□ 1.06
SMPDL3A-201ENST00000368440 NBPF8Q3BBV2 869 aa21.69■■□□□ 1.06
SMPDL3A-201ENST00000368440 TRAK1Q9UPV9 953 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 124.4 ms