RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 U2AF2P26368 475 aaKnown RBP eCLIP13.04□□□□□ -0.32
PCDH1-202ENST00000357517 SSFA2P28290 1259 aa13.04□□□□□ -0.32
PCDH1-202ENST00000357517 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.04□□□□□ -0.32
PCDH1-202ENST00000357517 CARMIL1Q5VZK9 1371 aa13.04□□□□□ -0.32
PCDH1-202ENST00000357517 CHMP4CQ96CF2 233 aa13.04□□□□□ -0.32
PCDH1-202ENST00000357517 FGD6Q6ZV73 1430 aa13.03□□□□□ -0.32
PCDH1-202ENST00000357517 TERF1P54274 439 aa13.03□□□□□ -0.32
PCDH1-202ENST00000357517 NEUROD2Q15784 382 aa13.03□□□□□ -0.32
PCDH1-202ENST00000357517 MCTP1Q6DN14 999 aa13.03□□□□□ -0.32
PCDH1-202ENST00000357517 RBSNQ9H1K0 784 aa13.03□□□□□ -0.32
PCDH1-202ENST00000357517 FOXD4L5Q5VV16 416 aaPredicted RBP13.03□□□□□ -0.32
PCDH1-202ENST00000357517 FOXD4L4Q8WXT5 416 aaPredicted RBP13.03□□□□□ -0.32
PCDH1-202ENST00000357517 CSPP1Q1MSJ5 1256 aa13.02□□□□□ -0.32
PCDH1-202ENST00000357517 RBM27Q9P2N5 1060 aaKnown RBP13.02□□□□□ -0.32
PCDH1-202ENST00000357517 ZKSCAN5Q9Y2L8 839 aa13.02□□□□□ -0.32
PCDH1-202ENST00000357517 TEX2Q8IWB9 1127 aa13.02□□□□□ -0.33
PCDH1-202ENST00000357517 SPINK5Q9NQ38 1064 aaPredicted RBP13.02□□□□□ -0.33
PCDH1-202ENST00000357517 MYOM3Q5VTT5 1437 aa13.02□□□□□ -0.33
PCDH1-202ENST00000357517 ERICH4A6NGS2 130 aa13.01□□□□□ -0.33
PCDH1-202ENST00000357517 ZNF710Q8N1W2 664 aa13.01□□□□□ -0.33
PCDH1-202ENST00000357517 PRIM1P49642 420 aaKnown RBP13.01□□□□□ -0.33
PCDH1-202ENST00000357517 SKOR2Q2VWA4 1001 aaPredicted RBP13.01□□□□□ -0.33
PCDH1-202ENST00000357517 SPATA31E1Q6ZUB1 1445 aa13.01□□□□□ -0.33
PCDH1-202ENST00000357517 PLCB2Q00722 1185 aa13.01□□□□□ -0.33
PCDH1-202ENST00000357517 FHOD3Q2V2M9 1422 aa13.01□□□□□ -0.33
PCDH1-202ENST00000357517 TNNQ9UQP3 1299 aa13□□□□□ -0.33
PCDH1-202ENST00000357517 ZNF500O60304 480 aaPredicted RBP13□□□□□ -0.33
PCDH1-202ENST00000357517 IRX5P78411 483 aaPredicted RBP13□□□□□ -0.33
PCDH1-202ENST00000357517 IRX3P78415 501 aaPredicted RBP12.99□□□□□ -0.33
PCDH1-202ENST00000357517 PDCL2Q8N4E4 241 aa12.99□□□□□ -0.33
PCDH1-202ENST00000357517 CHAMP1Q96JM3 812 aa12.99□□□□□ -0.33
PCDH1-202ENST00000357517 PTPN23Q9H3S7 1636 aa12.98□□□□□ -0.33
PCDH1-202ENST00000357517 PCDHB15Q9Y5E8 787 aa12.98□□□□□ -0.33
PCDH1-202ENST00000357517 RBM42Q9BTD8 480 aaKnown RBP12.97□□□□□ -0.33
PCDH1-202ENST00000357517 PLEKHH1Q9ULM0 1364 aa12.97□□□□□ -0.33
PCDH1-202ENST00000357517 SAMD1Q6SPF0 538 aaPredicted RBP12.97□□□□□ -0.33
PCDH1-202ENST00000357517 ZNF692Q9BU19 519 aaPredicted RBP12.97□□□□□ -0.33
PCDH1-202ENST00000357517 APAF1O14727 1248 aa12.96□□□□□ -0.33
PCDH1-202ENST00000357517 ZSCAN23Q3MJ62 389 aa12.96□□□□□ -0.33
PCDH1-202ENST00000357517 FOXD4L6Q3SYB3 417 aaPredicted RBP12.96□□□□□ -0.33
PCDH1-202ENST00000357517 FOXD4L3Q6VB84 417 aaPredicted RBP12.96□□□□□ -0.33
PCDH1-202ENST00000357517 SYCE3A1L190 88 aa12.96□□□□□ -0.34
PCDH1-202ENST00000357517 TRIM6-TRIM34B2RNG4 842 aa12.96□□□□□ -0.34
PCDH1-202ENST00000357517 KIAA2012Q0VF49 1180 aa12.96□□□□□ -0.34
PCDH1-202ENST00000357517 TRIM34Q9BYJ4 488 aa12.96□□□□□ -0.34
PCDH1-202ENST00000357517 KIF3AQ9Y496 699 aa12.96□□□□□ -0.34
PCDH1-202ENST00000357517 PCF11O94913 1555 aaKnown RBP12.95□□□□□ -0.34
PCDH1-202ENST00000357517 CFTRP13569 1480 aa12.95□□□□□ -0.34
PCDH1-202ENST00000357517 PRPF40AO75400 957 aaKnown RBP12.95□□□□□ -0.34
PCDH1-202ENST00000357517 MYRIPQ8NFW9 859 aa12.95□□□□□ -0.34
PCDH1-202ENST00000357517 CD2BP2O95400 341 aaKnown RBP12.94□□□□□ -0.34
PCDH1-202ENST00000357517 BCL2L12Q9HB09 334 aa12.94□□□□□ -0.34
PCDH1-202ENST00000357517 RAB3GAP1Q15042 981 aa12.94□□□□□ -0.34
PCDH1-202ENST00000357517 NLRP1Q9C000 1473 aa12.94□□□□□ -0.34
PCDH1-202ENST00000357517 TTC12Q9H892 705 aaPredicted RBP12.93□□□□□ -0.34
PCDH1-202ENST00000357517 CCDC39Q9UFE4 941 aa12.93□□□□□ -0.34
PCDH1-202ENST00000357517 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.93□□□□□ -0.34
PCDH1-202ENST00000357517 CNPY4Q8N129 248 aa12.93□□□□□ -0.34
PCDH1-202ENST00000357517 BAG4O95429 457 aaKnown RBP12.92□□□□□ -0.34
PCDH1-202ENST00000357517 DMRT2Q9Y5R5 561 aa12.92□□□□□ -0.34
PCDH1-202ENST00000357517 DENND4BO75064 1496 aaPredicted RBP12.92□□□□□ -0.34
PCDH1-202ENST00000357517 KLHL40Q2TBA0 621 aa12.92□□□□□ -0.34
PCDH1-202ENST00000357517 RGS22Q8NE09 1264 aa12.92□□□□□ -0.34
PCDH1-202ENST00000357517 CGNL1Q0VF96 1302 aa12.92□□□□□ -0.34
PCDH1-202ENST00000357517 APPP05067 770 aa12.91□□□□□ -0.34
PCDH1-202ENST00000357517 ROCK2O75116 1388 aaKnown RBP12.91□□□□□ -0.34
PCDH1-202ENST00000357517 SLFN5Q08AF3 891 aa12.91□□□□□ -0.34
PCDH1-202ENST00000357517 FGD5Q6ZNL6 1462 aa12.91□□□□□ -0.34
PCDH1-202ENST00000357517 TMX1Q9H3N1 280 aa12.9□□□□□ -0.34
PCDH1-202ENST00000357517 TNNT3P45378 269 aaPredicted RBP12.9□□□□□ -0.34
PCDH1-202ENST00000357517 PMFBP1Q8TBY8 1022 aa12.9□□□□□ -0.34
PCDH1-202ENST00000357517 RGL3Q3MIN7 710 aa12.9□□□□□ -0.35
PCDH1-202ENST00000357517 GAS2L2Q8NHY3 880 aa12.9□□□□□ -0.35
PCDH1-202ENST00000357517 RRP7AQ9Y3A4 280 aaKnown RBP12.9□□□□□ -0.35
PCDH1-202ENST00000357517 ANKRD30BQ9BXX2 1392 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 RLBP1P12271 317 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 PKP1Q13835 747 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 NBPF1Q3BBV0 1214 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 TAF3Q5VWG9 929 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 HMGXB3Q12766 1538 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 BCORL1Q5H9F3 1711 aa12.89□□□□□ -0.35
PCDH1-202ENST00000357517 NOLC1Q14978 699 aaKnown RBP eCLIP12.88□□□□□ -0.35
PCDH1-202ENST00000357517 RWDD1Q9H446 243 aaPredicted RBP12.88□□□□□ -0.35
PCDH1-202ENST00000357517 HS1BP3Q53T59 392 aa12.88□□□□□ -0.35
PCDH1-202ENST00000357517 WWC1Q8IX03 1113 aa12.88□□□□□ -0.35
PCDH1-202ENST00000357517 MIA2Q96PC5 1412 aa12.88□□□□□ -0.35
PCDH1-202ENST00000357517 CFAP43Q8NDM7 1665 aa12.87□□□□□ -0.35
PCDH1-202ENST00000357517 EIF3AQ14152 1382 aaKnown RBP12.87□□□□□ -0.35
PCDH1-202ENST00000357517 PKD2Q13563 968 aa12.87□□□□□ -0.35
PCDH1-202ENST00000357517 HMGN5P82970 282 aaKnown RBP12.87□□□□□ -0.35
PCDH1-202ENST00000357517 CHRM1P11229 460 aaPredicted RBP12.86□□□□□ -0.35
PCDH1-202ENST00000357517 NGEFQ8N5V2 710 aa12.86□□□□□ -0.35
PCDH1-202ENST00000357517 PDLIM2Q96JY6 352 aa12.86□□□□□ -0.35
PCDH1-202ENST00000357517 MLECQ14165 292 aa12.86□□□□□ -0.35
PCDH1-202ENST00000357517 SMC5Q8IY18 1101 aa12.85□□□□□ -0.35
PCDH1-202ENST00000357517 TIGD1Q96MW7 591 aa12.85□□□□□ -0.35
PCDH1-202ENST00000357517 DNAJC2Q99543 621 aaKnown RBP12.85□□□□□ -0.35
PCDH1-202ENST00000357517 LNPKQ9C0E8 428 aa12.85□□□□□ -0.35
PCDH1-202ENST00000357517 KCNG1Q9UIX4 513 aa12.85□□□□□ -0.35
PCDH1-202ENST00000357517 NSFL1CQ9UNZ2 370 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms