RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 SENP3Q9H4L4 574 aaPredicted RBP27.68■■■□□ 2.02
CLN3-202ENST00000355477 XIRP1Q702N8 1843 aaKnown RBP27.66■■■□□ 2.02
CLN3-202ENST00000355477 NUTM2DQ5VT03 806 aaPredicted RBP27.64■■■□□ 2.02
CLN3-202ENST00000355477 HDGFP51858 240 aaKnown RBP27.63■■■□□ 2.01
CLN3-202ENST00000355477 BCANQ96GW7 911 aa27.63■■■□□ 2.01
CLN3-202ENST00000355477 PLEKHG1Q9ULL1 1385 aa27.62■■■□□ 2.01
CLN3-202ENST00000355477 PPP1R15AO75807 674 aaPredicted RBP27.62■■■□□ 2.01
CLN3-202ENST00000355477 CLTCL1P53675 1640 aa27.61■■■□□ 2.01
CLN3-202ENST00000355477 ALKQ9UM73 1620 aa27.61■■■□□ 2.01
CLN3-202ENST00000355477 TOM1O60784 492 aa27.6■■■□□ 2.01
CLN3-202ENST00000355477 ABCF1Q8NE71 845 aaKnown RBP eCLIP27.6■■■□□ 2.01
CLN3-202ENST00000355477 TRPM2O94759 1503 aa27.6■■■□□ 2.01
CLN3-202ENST00000355477 KCNA6P17658 529 aa27.58■■■□□ 2.01
CLN3-202ENST00000355477 SLC4A1APQ9BWU0 796 aaKnown RBP27.58■■■□□ 2.01
CLN3-202ENST00000355477 CHD2O14647 1828 aaKnown RBP27.57■■■□□ 2
CLN3-202ENST00000355477 PIP4K2BP78356 416 aa27.57■■■□□ 2
CLN3-202ENST00000355477 KIF1BO60333 1816 aa27.57■■■□□ 2
CLN3-202ENST00000355477 SCAF1Q9H7N4 1312 aaKnown RBP27.54■■■□□ 2
CLN3-202ENST00000355477 NWD1Q149M9 1564 aa27.53■■■□□ 2
CLN3-202ENST00000355477 ADAMTS13Q76LX8 1427 aa27.52■■■□□ 2
CLN3-202ENST00000355477 TBX22Q9Y458 520 aa27.52■■■□□ 2
CLN3-202ENST00000355477 ZNF326Q5BKZ1 582 aaKnown RBP27.51■■□□□ 1.99
CLN3-202ENST00000355477 FOXD1Q16676 465 aa27.5■■□□□ 1.99
CLN3-202ENST00000355477 TMEM94Q12767 1356 aa27.49■■□□□ 1.99
CLN3-202ENST00000355477 PROSER2Q86WR7 435 aaPredicted RBP27.49■■□□□ 1.99
CLN3-202ENST00000355477 RBM33Q96EV2 1170 aaKnown RBP27.49■■□□□ 1.99
CLN3-202ENST00000355477 SETD5Q9C0A6 1442 aa27.47■■□□□ 1.99
CLN3-202ENST00000355477 NKTRP30414 1462 aaKnown RBP27.46■■□□□ 1.99
CLN3-202ENST00000355477 NRXN3Q9Y4C0 1643 aa27.46■■□□□ 1.99
CLN3-202ENST00000355477 MPHOSPH9Q99550 1183 aa27.46■■□□□ 1.99
CLN3-202ENST00000355477 DIP2AQ14689 1571 aa27.46■■□□□ 1.99
CLN3-202ENST00000355477 NEXMIFQ5QGS0 1516 aa27.46■■□□□ 1.99
CLN3-202ENST00000355477 HSPA1LP34931 641 aa27.45■■□□□ 1.98
CLN3-202ENST00000355477 SETBP1Q9Y6X0 1596 aa27.41■■□□□ 1.98
CLN3-202ENST00000355477 PIK3R4Q99570 1358 aa27.39■■□□□ 1.98
CLN3-202ENST00000355477 PTPRUQ92729 1446 aa27.38■■□□□ 1.97
CLN3-202ENST00000355477 RAB3GAP2Q9H2M9 1393 aa27.37■■□□□ 1.97
CLN3-202ENST00000355477 PPLO60437 1756 aa27.35■■□□□ 1.97
CLN3-202ENST00000355477 AMOTL2Q9Y2J4 779 aa27.34■■□□□ 1.97
CLN3-202ENST00000355477 ACIN1Q9UKV3 1341 aaKnown RBP27.33■■□□□ 1.97
CLN3-202ENST00000355477 METP08581 1390 aa27.32■■□□□ 1.96
CLN3-202ENST00000355477 CCDC144AA2RUR9 1427 aa27.32■■□□□ 1.96
CLN3-202ENST00000355477 XRN1Q8IZH2 1706 aaKnown RBP27.31■■□□□ 1.96
CLN3-202ENST00000355477 RPGRIP1LQ68CZ1 1315 aa27.31■■□□□ 1.96
CLN3-202ENST00000355477 MSH6P52701 1360 aa27.31■■□□□ 1.96
CLN3-202ENST00000355477 DISP3Q9P2K9 1392 aa27.31■■□□□ 1.96
CLN3-202ENST00000355477 VGFO15240 615 aaPredicted RBP27.3■■□□□ 1.96
CLN3-202ENST00000355477 SETD1AO15047 1707 aaKnown RBP27.28■■□□□ 1.96
CLN3-202ENST00000355477 FAM135BQ49AJ0 1406 aa27.27■■□□□ 1.96
CLN3-202ENST00000355477 SPATA31E1Q6ZUB1 1445 aa27.27■■□□□ 1.96
CLN3-202ENST00000355477 NCOA3Q9Y6Q9 1424 aa27.27■■□□□ 1.96
CLN3-202ENST00000355477 SIPA1L2Q9P2F8 1722 aaPredicted RBP27.27■■□□□ 1.96
CLN3-202ENST00000355477 ROBO1Q9Y6N7 1651 aa27.27■■□□□ 1.96
CLN3-202ENST00000355477 RGL3Q3MIN7 710 aa27.25■■□□□ 1.95
CLN3-202ENST00000355477 IFT172Q9UG01 1749 aa27.24■■□□□ 1.95
CLN3-202ENST00000355477 C14orf37Q86TY3 774 aa27.24■■□□□ 1.95
CLN3-202ENST00000355477 SLAIN2Q9P270 581 aa27.24■■□□□ 1.95
CLN3-202ENST00000355477 C19orf44Q9H6X5 657 aa27.21■■□□□ 1.95
CLN3-202ENST00000355477 ADGRF5Q8IZF2 1346 aa27.19■■□□□ 1.94
CLN3-202ENST00000355477 HRCP23327 699 aa27.18■■□□□ 1.94
CLN3-202ENST00000355477 MED1Q15648 1581 aaPredicted RBP27.17■■□□□ 1.94
CLN3-202ENST00000355477 ATF3P18847 181 aa27.15■■□□□ 1.94
CLN3-202ENST00000355477 ILDR2Q71H61 639 aa27.14■■□□□ 1.94
CLN3-202ENST00000355477 CADPS2Q86UW7 1296 aa27.14■■□□□ 1.94
CLN3-202ENST00000355477 ANKRD30BQ9BXX2 1392 aa27.13■■□□□ 1.93
CLN3-202ENST00000355477 NALCNQ8IZF0 1738 aa27.12■■□□□ 1.93
CLN3-202ENST00000355477 PHLPP1O60346 1717 aa27.1■■□□□ 1.93
CLN3-202ENST00000355477 ROBO2Q9HCK4 1378 aa27.09■■□□□ 1.93
CLN3-202ENST00000355477 DCCP43146 1447 aa27.08■■□□□ 1.93
CLN3-202ENST00000355477 PTCH1Q13635 1447 aa27.07■■□□□ 1.92
CLN3-202ENST00000355477 ADGRL3Q9HAR2 1447 aa27.07■■□□□ 1.92
CLN3-202ENST00000355477 PIK3C2GO75747 1445 aa27.06■■□□□ 1.92
CLN3-202ENST00000355477 PRAG1Q86YV5 1406 aa27.06■■□□□ 1.92
CLN3-202ENST00000355477 MST1RQ04912 1400 aa27.03■■□□□ 1.92
CLN3-202ENST00000355477 ASXL1Q8IXJ9 1541 aa27.03■■□□□ 1.92
CLN3-202ENST00000355477 COL16A1Q07092 1604 aaPredicted RBP27.02■■□□□ 1.92
CLN3-202ENST00000355477 TMEM132EQ6IEE7 984 aa27.02■■□□□ 1.92
CLN3-202ENST00000355477 NRXN1Q9ULB1 1477 aa27.01■■□□□ 1.91
CLN3-202ENST00000355477 BRINP3Q76B58 766 aa27.01■■□□□ 1.91
CLN3-202ENST00000355477 STK26Q9P289 416 aa27■■□□□ 1.91
CLN3-202ENST00000355477 MYOM2P54296 1465 aa27■■□□□ 1.91
CLN3-202ENST00000355477 AHDC1Q5TGY3 1603 aaPredicted RBP26.99■■□□□ 1.91
CLN3-202ENST00000355477 C14orf93Q9H972 538 aaKnown RBP26.98■■□□□ 1.91
CLN3-202ENST00000355477 LRPPRCP42704 1394 aaKnown RBP26.97■■□□□ 1.91
CLN3-202ENST00000355477 KNDC1Q76NI1 1749 aa26.96■■□□□ 1.91
CLN3-202ENST00000355477 CFAP70Q5T0N1 1121 aa26.96■■□□□ 1.91
CLN3-202ENST00000355477 TECPR2O15040 1411 aa26.95■■□□□ 1.9
CLN3-202ENST00000355477 WAPLQ7Z5K2 1190 aa26.94■■□□□ 1.9
CLN3-202ENST00000355477 ABCC11Q96J66 1382 aa26.94■■□□□ 1.9
CLN3-202ENST00000355477 LAMC1P11047 1609 aa26.94■■□□□ 1.9
CLN3-202ENST00000355477 YTHDC2Q9H6S0 1430 aaKnown RBP26.93■■□□□ 1.9
CLN3-202ENST00000355477 PHF23Q9BUL5 403 aaPredicted RBP26.93■■□□□ 1.9
CLN3-202ENST00000355477 NHSL1Q5SYE7 1610 aa26.93■■□□□ 1.9
CLN3-202ENST00000355477 JCADQ9P266 1359 aa26.92■■□□□ 1.9
CLN3-202ENST00000355477 DCAF11Q8TEB1 546 aa26.91■■□□□ 1.9
CLN3-202ENST00000355477 KDM2AQ9Y2K7 1162 aa26.91■■□□□ 1.9
CLN3-202ENST00000355477 C1orf167Q5SNV9 1468 aa26.91■■□□□ 1.9
CLN3-202ENST00000355477 PLEKHH1Q9ULM0 1364 aa26.9■■□□□ 1.9
CLN3-202ENST00000355477 DDX17Q92841 729 aaKnown RBP26.89■■□□□ 1.9
CLN3-202ENST00000355477 DHX57Q6P158 1386 aaKnown RBP26.87■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms