RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 SENP3Q9H4L4 574 aaPredicted RBP22.22■■□□□ 1.15
PRPF40A-201ENST00000354363 ZFYVE9O95405 1425 aa22.22■■□□□ 1.15
PRPF40A-201ENST00000354363 NWD1Q149M9 1564 aa22.21■■□□□ 1.15
PRPF40A-201ENST00000354363 TMEM94Q12767 1356 aa22.2■■□□□ 1.15
PRPF40A-201ENST00000354363 CHD2O14647 1828 aaKnown RBP22.19■■□□□ 1.14
PRPF40A-201ENST00000354363 PPARGC1BQ86YN6 1023 aaKnown RBP22.19■■□□□ 1.14
PRPF40A-201ENST00000354363 RIMS2Q9UQ26 1411 aa22.18■■□□□ 1.14
PRPF40A-201ENST00000354363 ITGAEP38570 1179 aa22.18■■□□□ 1.14
PRPF40A-201ENST00000354363 PLEKHG1Q9ULL1 1385 aa22.18■■□□□ 1.14
PRPF40A-201ENST00000354363 BCANQ96GW7 911 aa22.17■■□□□ 1.14
PRPF40A-201ENST00000354363 NKTRP30414 1462 aaKnown RBP22.17■■□□□ 1.14
PRPF40A-201ENST00000354363 PROSER2Q86WR7 435 aaPredicted RBP22.17■■□□□ 1.14
PRPF40A-201ENST00000354363 NUP155O75694 1391 aa22.15■■□□□ 1.14
PRPF40A-201ENST00000354363 HDGFP51858 240 aaKnown RBP22.14■■□□□ 1.14
PRPF40A-201ENST00000354363 RBM33Q96EV2 1170 aaKnown RBP22.14■■□□□ 1.14
PRPF40A-201ENST00000354363 FAM135BQ49AJ0 1406 aa22.13■■□□□ 1.13
PRPF40A-201ENST00000354363 PPP1R15AO75807 674 aaPredicted RBP22.13■■□□□ 1.13
PRPF40A-201ENST00000354363 CHGAP10645 457 aaKnown RBP22.13■■□□□ 1.13
PRPF40A-201ENST00000354363 ROBO1Q9Y6N7 1651 aa22.12■■□□□ 1.13
PRPF40A-201ENST00000354363 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.1■■□□□ 1.13
PRPF40A-201ENST00000354363 PHF23Q9BUL5 403 aaPredicted RBP22.1■■□□□ 1.13
PRPF40A-201ENST00000354363 SPHKAPQ2M3C7 1700 aa22.1■■□□□ 1.13
PRPF40A-201ENST00000354363 TBX22Q9Y458 520 aa22.08■■□□□ 1.13
PRPF40A-201ENST00000354363 ADAMTS13Q76LX8 1427 aa22.07■■□□□ 1.12
PRPF40A-201ENST00000354363 NUTM2DQ5VT03 806 aaPredicted RBP22.07■■□□□ 1.12
PRPF40A-201ENST00000354363 MSH6P52701 1360 aa22.07■■□□□ 1.12
PRPF40A-201ENST00000354363 DIP2AQ14689 1571 aa22.07■■□□□ 1.12
PRPF40A-201ENST00000354363 RRBP1Q9P2E9 1410 aaKnown RBP22.04■■□□□ 1.12
PRPF40A-201ENST00000354363 NCOA3Q9Y6Q9 1424 aa22■■□□□ 1.11
PRPF40A-201ENST00000354363 PIK3R4Q99570 1358 aa22■■□□□ 1.11
PRPF40A-201ENST00000354363 SLAIN2Q9P270 581 aa22■■□□□ 1.11
PRPF40A-201ENST00000354363 PHLPP1O60346 1717 aa22■■□□□ 1.11
PRPF40A-201ENST00000354363 TRPM2O94759 1503 aa22■■□□□ 1.11
PRPF40A-201ENST00000354363 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.99■■□□□ 1.11
PRPF40A-201ENST00000354363 NRXN3Q9Y4C0 1643 aa21.98■■□□□ 1.11
PRPF40A-201ENST00000354363 NAIPQ13075 1403 aa21.97■■□□□ 1.11
PRPF40A-201ENST00000354363 RGS17Q9UGC6 210 aaPredicted RBP21.96■■□□□ 1.11
PRPF40A-201ENST00000354363 CLTCL1P53675 1640 aa21.96■■□□□ 1.11
PRPF40A-201ENST00000354363 KIF1BO60333 1816 aa21.95■■□□□ 1.1
PRPF40A-201ENST00000354363 PTPRUQ92729 1446 aa21.95■■□□□ 1.1
PRPF40A-201ENST00000354363 SETBP1Q9Y6X0 1596 aa21.95■■□□□ 1.1
PRPF40A-201ENST00000354363 C14orf37Q86TY3 774 aa21.94■■□□□ 1.1
PRPF40A-201ENST00000354363 AMOTL2Q9Y2J4 779 aa21.93■■□□□ 1.1
PRPF40A-201ENST00000354363 XRN1Q8IZH2 1706 aaKnown RBP21.93■■□□□ 1.1
PRPF40A-201ENST00000354363 ZNF326Q5BKZ1 582 aaKnown RBP21.91■■□□□ 1.1
PRPF40A-201ENST00000354363 COL16A1Q07092 1604 aaPredicted RBP21.91■■□□□ 1.1
PRPF40A-201ENST00000354363 C19orf44Q9H6X5 657 aa21.91■■□□□ 1.1
PRPF40A-201ENST00000354363 NEXMIFQ5QGS0 1516 aa21.9■■□□□ 1.1
PRPF40A-201ENST00000354363 CADPS2Q86UW7 1296 aa21.89■■□□□ 1.09
PRPF40A-201ENST00000354363 JCADQ9P266 1359 aa21.88■■□□□ 1.09
PRPF40A-201ENST00000354363 HFM1A2PYH4 1435 aa21.88■■□□□ 1.09
PRPF40A-201ENST00000354363 ATF3P18847 181 aa21.88■■□□□ 1.09
PRPF40A-201ENST00000354363 AHDC1Q5TGY3 1603 aaPredicted RBP21.86■■□□□ 1.09
PRPF40A-201ENST00000354363 METP08581 1390 aa21.86■■□□□ 1.09
PRPF40A-201ENST00000354363 TRIM52Q96A61 297 aa21.84■■□□□ 1.09
PRPF40A-201ENST00000354363 POTEAQ6S8J7 498 aa21.83■■□□□ 1.08
PRPF40A-201ENST00000354363 DCCP43146 1447 aa21.83■■□□□ 1.08
PRPF40A-201ENST00000354363 SETD1AO15047 1707 aaKnown RBP21.81■■□□□ 1.08
PRPF40A-201ENST00000354363 SHPRHQ149N8 1683 aa21.81■■□□□ 1.08
PRPF40A-201ENST00000354363 BRINP3Q76B58 766 aa21.79■■□□□ 1.08
PRPF40A-201ENST00000354363 NALCNQ8IZF0 1738 aa21.79■■□□□ 1.08
PRPF40A-201ENST00000354363 PPLO60437 1756 aa21.78■■□□□ 1.08
PRPF40A-201ENST00000354363 SLC4A1APQ9BWU0 796 aaKnown RBP21.78■■□□□ 1.08
PRPF40A-201ENST00000354363 MST1RQ04912 1400 aa21.77■■□□□ 1.08
PRPF40A-201ENST00000354363 LRP6O75581 1613 aa21.77■■□□□ 1.08
PRPF40A-201ENST00000354363 SPATA31A6Q5VVP1 1343 aa21.76■■□□□ 1.07
PRPF40A-201ENST00000354363 ASXL1Q8IXJ9 1541 aa21.76■■□□□ 1.07
PRPF40A-201ENST00000354363 NHSL1Q5SYE7 1610 aa21.76■■□□□ 1.07
PRPF40A-201ENST00000354363 ADGRL3Q9HAR2 1447 aa21.76■■□□□ 1.07
PRPF40A-201ENST00000354363 VGFO15240 615 aaPredicted RBP21.74■■□□□ 1.07
PRPF40A-201ENST00000354363 RPGRIP1LQ68CZ1 1315 aa21.73■■□□□ 1.07
PRPF40A-201ENST00000354363 PTCH1Q13635 1447 aa21.71■■□□□ 1.07
PRPF40A-201ENST00000354363 FOXD1Q16676 465 aa21.69■■□□□ 1.06
PRPF40A-201ENST00000354363 MEX3CQ5U5Q3 659 aaKnown RBP21.69■■□□□ 1.06
PRPF40A-201ENST00000354363 SETD5Q9C0A6 1442 aa21.69■■□□□ 1.06
PRPF40A-201ENST00000354363 ROBO2Q9HCK4 1378 aa21.67■■□□□ 1.06
PRPF40A-201ENST00000354363 PRAG1Q86YV5 1406 aa21.67■■□□□ 1.06
PRPF40A-201ENST00000354363 IFT172Q9UG01 1749 aa21.65■■□□□ 1.06
PRPF40A-201ENST00000354363 C1orf167Q5SNV9 1468 aa21.64■■□□□ 1.06
PRPF40A-201ENST00000354363 DDX17Q92841 729 aaKnown RBP21.64■■□□□ 1.05
PRPF40A-201ENST00000354363 CCDC144AA2RUR9 1427 aa21.64■■□□□ 1.05
PRPF40A-201ENST00000354363 NUTM2BA6NNL0 878 aaPredicted RBP21.63■■□□□ 1.05
PRPF40A-201ENST00000354363 NUTM2EB1AL46 878 aaPredicted RBP21.63■■□□□ 1.05
PRPF40A-201ENST00000354363 ZNF772Q68DY9 489 aaPredicted RBP21.63■■□□□ 1.05
PRPF40A-201ENST00000354363 NUTM2AQ8IVF1 878 aaPredicted RBP21.63■■□□□ 1.05
PRPF40A-201ENST00000354363 LAMC1P11047 1609 aa21.63■■□□□ 1.05
PRPF40A-201ENST00000354363 LRRC59Q96AG4 307 aaKnown RBP21.62■■□□□ 1.05
PRPF40A-201ENST00000354363 MPHOSPH9Q99550 1183 aa21.62■■□□□ 1.05
PRPF40A-201ENST00000354363 SPATA31E1Q6ZUB1 1445 aa21.62■■□□□ 1.05
PRPF40A-201ENST00000354363 ADGRF5Q8IZF2 1346 aa21.6■■□□□ 1.05
PRPF40A-201ENST00000354363 PNPLA6Q8IY17 1366 aa21.59■■□□□ 1.05
PRPF40A-201ENST00000354363 RGL3Q3MIN7 710 aa21.58■■□□□ 1.05
PRPF40A-201ENST00000354363 ORAI2Q96SN7 254 aa21.57■■□□□ 1.04
PRPF40A-201ENST00000354363 ANKRD30BQ9BXX2 1392 aa21.56■■□□□ 1.04
PRPF40A-201ENST00000354363 KNDC1Q76NI1 1749 aa21.55■■□□□ 1.04
PRPF40A-201ENST00000354363 AFF2P51816 1311 aa21.55■■□□□ 1.04
PRPF40A-201ENST00000354363 CDC42BPGQ6DT37 1551 aa21.54■■□□□ 1.04
PRPF40A-201ENST00000354363 SOS2Q07890 1332 aaPredicted RBP21.53■■□□□ 1.04
PRPF40A-201ENST00000354363 TECPR2O15040 1411 aa21.53■■□□□ 1.04
PRPF40A-201ENST00000354363 PIK3C2GO75747 1445 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms