RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 MYOM1P52179 1685 aa29.67■■■□□ 2.34
UPF3A-201ENST00000351487 PDE3BQ13370 1112 aa29.67■■■□□ 2.34
UPF3A-201ENST00000351487 EIF3AQ14152 1382 aaKnown RBP29.66■■■□□ 2.34
UPF3A-201ENST00000351487 CDCA8Q53HL2 280 aa29.65■■■□□ 2.34
UPF3A-201ENST00000351487 ABCA6Q8N139 1617 aa29.65■■■□□ 2.34
UPF3A-201ENST00000351487 FANCIQ9NVI1 1328 aa29.65■■■□□ 2.34
UPF3A-201ENST00000351487 SENP3-EIF4A1A0A087X0R7 540 aa29.64■■■□□ 2.34
UPF3A-201ENST00000351487 UGGT1Q9NYU2 1555 aa29.64■■■□□ 2.34
UPF3A-201ENST00000351487 MYT1LQ9UL68 1186 aa29.62■■■□□ 2.33
UPF3A-201ENST00000351487 MROH2AA6NES4 1674 aa29.62■■■□□ 2.33
UPF3A-201ENST00000351487 KDM5AP29375 1690 aaKnown RBP29.62■■■□□ 2.33
UPF3A-201ENST00000351487 NRXN1Q9ULB1 1477 aa29.59■■■□□ 2.33
UPF3A-201ENST00000351487 POGZQ7Z3K3 1410 aa29.58■■■□□ 2.33
UPF3A-201ENST00000351487 ASXL1Q8IXJ9 1541 aa29.57■■■□□ 2.32
UPF3A-201ENST00000351487 ADGRB3O60242 1522 aa29.56■■■□□ 2.32
UPF3A-201ENST00000351487 MLH3Q9UHC1 1453 aa29.56■■■□□ 2.32
UPF3A-201ENST00000351487 NPC1L1Q9UHC9 1359 aa29.55■■■□□ 2.32
UPF3A-201ENST00000351487 MYO3AQ8NEV4 1616 aa29.55■■■□□ 2.32
UPF3A-201ENST00000351487 KNSTRNQ9Y448 316 aa29.55■■■□□ 2.32
UPF3A-201ENST00000351487 FRMPD1Q5SYB0 1578 aa29.55■■■□□ 2.32
UPF3A-201ENST00000351487 HECW2Q9P2P5 1572 aa29.55■■■□□ 2.32
UPF3A-201ENST00000351487 AMER1Q5JTC6 1135 aaPredicted RBP29.55■■■□□ 2.32
UPF3A-201ENST00000351487 RRP1P56182 461 aaKnown RBP29.54■■■□□ 2.32
UPF3A-201ENST00000351487 CCDC136Q96JN2 1154 aa29.53■■■□□ 2.32
UPF3A-201ENST00000351487 RCAN3Q9UKA8 241 aa29.53■■■□□ 2.32
UPF3A-201ENST00000351487 CD109Q6YHK3 1445 aa29.52■■■□□ 2.32
UPF3A-201ENST00000351487 SLC24A1O60721 1099 aa29.52■■■□□ 2.32
UPF3A-201ENST00000351487 NPM1P06748 294 aaKnown RBP eCLIP29.51■■■□□ 2.31
UPF3A-201ENST00000351487 SETBP1Q9Y6X0 1596 aa29.49■■■□□ 2.31
UPF3A-201ENST00000351487 PIK3C2GO75747 1445 aa29.49■■■□□ 2.31
UPF3A-201ENST00000351487 ADGRF5Q8IZF2 1346 aa29.49■■■□□ 2.31
UPF3A-201ENST00000351487 ERVK-7P63135 1459 aa29.49■■■□□ 2.31
UPF3A-201ENST00000351487 PPP2R1AP30153 589 aa29.48■■■□□ 2.31
UPF3A-201ENST00000351487 OSCARQ8IYS5 282 aa29.48■■■□□ 2.31
UPF3A-201ENST00000351487 PPLO60437 1756 aa29.47■■■□□ 2.31
UPF3A-201ENST00000351487 CFAP70Q5T0N1 1121 aa29.47■■■□□ 2.31
UPF3A-201ENST00000351487 SALL2Q9Y467 1007 aaPredicted RBP29.47■■■□□ 2.31
UPF3A-201ENST00000351487 SBNO2Q9Y2G9 1366 aa29.46■■■□□ 2.31
UPF3A-201ENST00000351487 NPATQ14207 1427 aa29.46■■■□□ 2.31
UPF3A-201ENST00000351487 MSH5O43196 834 aa29.45■■■□□ 2.31
UPF3A-201ENST00000351487 CDCA7LQ96GN5 454 aa29.43■■■□□ 2.3
UPF3A-201ENST00000351487 ADAMTS8Q9UP79 889 aa29.41■■■□□ 2.3
UPF3A-201ENST00000351487 NOS1P29475 1434 aa29.4■■■□□ 2.3
UPF3A-201ENST00000351487 ABCC3O15438 1527 aa29.4■■■□□ 2.3
UPF3A-201ENST00000351487 NEO1Q92859 1461 aa29.4■■■□□ 2.3
UPF3A-201ENST00000351487 ZC3H13Q5T200 1668 aaKnown RBP29.39■■■□□ 2.29
UPF3A-201ENST00000351487 CAMSAP1Q5T5Y3 1602 aa29.37■■■□□ 2.29
UPF3A-201ENST00000351487 CFAP65Q6ZU64 1925 aaKnown RBP29.35■■■□□ 2.29
UPF3A-201ENST00000351487 WDR43Q15061 677 aaKnown RBP eCLIP29.35■■■□□ 2.29
UPF3A-201ENST00000351487 ADGRB1O14514 1584 aa29.34■■■□□ 2.29
UPF3A-201ENST00000351487 EXOC6Q8TAG9 804 aa29.33■■■□□ 2.29
UPF3A-201ENST00000351487 PIK3C2BO00750 1634 aa29.32■■■□□ 2.28
UPF3A-201ENST00000351487 QRICH2Q9H0J4 1663 aa29.31■■■□□ 2.28
UPF3A-201ENST00000351487 SIGLEC1Q9BZZ2 1709 aa29.31■■■□□ 2.28
UPF3A-201ENST00000351487 PLEKHH1Q9ULM0 1364 aa29.3■■■□□ 2.28
UPF3A-201ENST00000351487 DIP2CQ9Y2E4 1556 aa29.3■■■□□ 2.28
UPF3A-201ENST00000351487 ZNF521Q96K83 1311 aa29.3■■■□□ 2.28
UPF3A-201ENST00000351487 RPGRIP1LQ68CZ1 1315 aa29.3■■■□□ 2.28
UPF3A-201ENST00000351487 CENPJQ9HC77 1338 aaPredicted RBP29.28■■■□□ 2.28
UPF3A-201ENST00000351487 GGT6Q6P531 493 aa29.28■■■□□ 2.28
UPF3A-201ENST00000351487 C14orf93Q9H972 538 aaKnown RBP29.28■■■□□ 2.28
UPF3A-201ENST00000351487 RICTORQ6R327 1708 aa29.27■■■□□ 2.28
UPF3A-201ENST00000351487 CARD14Q9BXL6 1004 aa29.25■■■□□ 2.27
UPF3A-201ENST00000351487 CHGAP10645 457 aaKnown RBP29.23■■■□□ 2.27
UPF3A-201ENST00000351487 ARHGAP31Q2M1Z3 1444 aa29.21■■■□□ 2.27
UPF3A-201ENST00000351487 DUSP27Q5VZP5 1158 aa29.21■■■□□ 2.27
UPF3A-201ENST00000351487 USP32Q8NFA0 1604 aa29.21■■■□□ 2.27
UPF3A-201ENST00000351487 NEXMIFQ5QGS0 1516 aa29.2■■■□□ 2.27
UPF3A-201ENST00000351487 GLI2P10070 1586 aa29.2■■■□□ 2.26
UPF3A-201ENST00000351487 GOLGA2Q08379 1002 aa29.18■■■□□ 2.26
UPF3A-201ENST00000351487 ARHGEF28Q8N1W1 1705 aaKnown RBP29.17■■■□□ 2.26
UPF3A-201ENST00000351487 RAPGEF3O95398 923 aa29.16■■■□□ 2.26
UPF3A-201ENST00000351487 POLR3AO14802 1390 aaPredicted RBP29.15■■■□□ 2.26
UPF3A-201ENST00000351487 PLIN1O60240 522 aa29.15■■■□□ 2.26
UPF3A-201ENST00000351487 TRAK1Q9UPV9 953 aa29.15■■■□□ 2.26
UPF3A-201ENST00000351487 ERICH6Q7L0X2 663 aa29.14■■■□□ 2.26
UPF3A-201ENST00000351487 TCERG1O14776 1098 aaKnown RBP29.13■■■□□ 2.25
UPF3A-201ENST00000351487 NSD3Q9BZ95 1437 aa29.13■■■□□ 2.25
UPF3A-201ENST00000351487 SLFN5Q08AF3 891 aa29.12■■■□□ 2.25
UPF3A-201ENST00000351487 TRMT2AQ8IZ69 625 aaKnown RBP29.12■■■□□ 2.25
UPF3A-201ENST00000351487 NGEFQ8N5V2 710 aa29.12■■■□□ 2.25
UPF3A-201ENST00000351487 CRBNQ96SW2 442 aa29.12■■■□□ 2.25
UPF3A-201ENST00000351487 SHPRHQ149N8 1683 aa29.11■■■□□ 2.25
UPF3A-201ENST00000351487 PUS7Q96PZ0 661 aaKnown RBP29.09■■■□□ 2.25
UPF3A-201ENST00000351487 ZFYVE9O95405 1425 aa29.09■■■□□ 2.25
UPF3A-201ENST00000351487 VGFO15240 615 aaPredicted RBP29.08■■■□□ 2.25
UPF3A-201ENST00000351487 TMEM132EQ6IEE7 984 aa29.08■■■□□ 2.25
UPF3A-201ENST00000351487 CCDC146Q8IYE0 955 aa29.08■■■□□ 2.25
UPF3A-201ENST00000351487 TULP4Q9NRJ4 1543 aa29.07■■■□□ 2.24
UPF3A-201ENST00000351487 YEATS2Q9ULM3 1422 aa29.06■■■□□ 2.24
UPF3A-201ENST00000351487 PREX1Q8TCU6 1659 aa29.05■■■□□ 2.24
UPF3A-201ENST00000351487 APAF1O14727 1248 aa29.05■■■□□ 2.24
UPF3A-201ENST00000351487 NKTRP30414 1462 aaKnown RBP29.05■■■□□ 2.24
UPF3A-201ENST00000351487 MS4A1P11836 297 aa29.05■■■□□ 2.24
UPF3A-201ENST00000351487 SLC12A5Q9H2X9 1139 aa29.04■■■□□ 2.24
UPF3A-201ENST00000351487 MYO5BQ9ULV0 1848 aa29.03■■■□□ 2.24
UPF3A-201ENST00000351487 ANP32AP39687 249 aaKnown RBP29.02■■■□□ 2.24
UPF3A-201ENST00000351487 C20orf194Q5TEA3 1177 aa29.02■■■□□ 2.24
UPF3A-201ENST00000351487 TMEM131LA2VDJ0 1609 aa29.01■■■□□ 2.24
UPF3A-201ENST00000351487 GOLGA6L2Q8N9W4 650 aaPredicted RBP29.01■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms