RNA–Protein interactions for RNA: ENST00000344921.10

SMARCB1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 2 BASIC

Gene SMARCB1, Length 1,728 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-202ENST00000344921 NEURL4Q96JN8 1562 aa30.49■■■□□ 2.47
SMARCB1-202ENST00000344921 NUTM2DQ5VT03 806 aaPredicted RBP30.48■■■□□ 2.47
SMARCB1-202ENST00000344921 NPHP4O75161 1426 aaPredicted RBP30.48■■■□□ 2.47
SMARCB1-202ENST00000344921 ANKRD30BQ9BXX2 1392 aa30.47■■■□□ 2.47
SMARCB1-202ENST00000344921 ABCF1Q8NE71 845 aaKnown RBP eCLIP30.47■■■□□ 2.47
SMARCB1-202ENST00000344921 BCANQ96GW7 911 aa30.46■■■□□ 2.47
SMARCB1-202ENST00000344921 MED14O60244 1454 aa30.46■■■□□ 2.47
SMARCB1-202ENST00000344921 ZFYVE9O95405 1425 aa30.45■■■□□ 2.46
SMARCB1-202ENST00000344921 SENP3Q9H4L4 574 aaPredicted RBP30.44■■■□□ 2.46
SMARCB1-202ENST00000344921 IQGAP1P46940 1657 aa30.44■■■□□ 2.46
SMARCB1-202ENST00000344921 RGL3Q3MIN7 710 aa30.44■■■□□ 2.46
SMARCB1-202ENST00000344921 DHX57Q6P158 1386 aaKnown RBP30.38■■■□□ 2.45
SMARCB1-202ENST00000344921 RPGRIP1LQ68CZ1 1315 aa30.36■■■□□ 2.45
SMARCB1-202ENST00000344921 SPATA31E1Q6ZUB1 1445 aa30.35■■■□□ 2.45
SMARCB1-202ENST00000344921 NEXMIFQ5QGS0 1516 aa30.34■■■□□ 2.45
SMARCB1-202ENST00000344921 PLEKHG1Q9ULL1 1385 aa30.34■■■□□ 2.45
SMARCB1-202ENST00000344921 SLC26A8Q96RN1 970 aa30.33■■■□□ 2.45
SMARCB1-202ENST00000344921 VGFO15240 615 aaPredicted RBP30.32■■■□□ 2.44
SMARCB1-202ENST00000344921 ZNF335Q9H4Z2 1342 aaPredicted RBP30.31■■■□□ 2.44
SMARCB1-202ENST00000344921 PPLO60437 1756 aa30.27■■■□□ 2.44
SMARCB1-202ENST00000344921 NEUROD1Q13562 356 aa30.22■■■□□ 2.43
SMARCB1-202ENST00000344921 SIN3AQ96ST3 1273 aa30.22■■■□□ 2.43
SMARCB1-202ENST00000344921 TBX22Q9Y458 520 aa30.21■■■□□ 2.43
SMARCB1-202ENST00000344921 IFT172Q9UG01 1749 aa30.2■■■□□ 2.43
SMARCB1-202ENST00000344921 ADAMTS13Q76LX8 1427 aa30.19■■■□□ 2.42
SMARCB1-202ENST00000344921 ADGRF5Q8IZF2 1346 aa30.19■■■□□ 2.42
SMARCB1-202ENST00000344921 SETBP1Q9Y6X0 1596 aa30.18■■■□□ 2.42
SMARCB1-202ENST00000344921 DCAF11Q8TEB1 546 aa30.18■■■□□ 2.42
SMARCB1-202ENST00000344921 KDM2AQ9Y2K7 1162 aa30.17■■■□□ 2.42
SMARCB1-202ENST00000344921 LTBP4Q8N2S1 1624 aa30.17■■■□□ 2.42
SMARCB1-202ENST00000344921 DIP2AQ14689 1571 aa30.16■■■□□ 2.42
SMARCB1-202ENST00000344921 NRXN3Q9Y4C0 1643 aa30.15■■■□□ 2.42
SMARCB1-202ENST00000344921 CERKQ8TCT0 537 aa30.13■■■□□ 2.41
SMARCB1-202ENST00000344921 KCNA6P17658 529 aa30.12■■■□□ 2.41
SMARCB1-202ENST00000344921 CPS1P31327 1500 aa30.11■■■□□ 2.41
SMARCB1-202ENST00000344921 STRCP1A6NGW2 1772 aa30.1■■■□□ 2.41
SMARCB1-202ENST00000344921 MYOM2P54296 1465 aa30.1■■■□□ 2.41
SMARCB1-202ENST00000344921 STAC3Q96MF2 364 aa30.08■■■□□ 2.41
SMARCB1-202ENST00000344921 ALKQ9UM73 1620 aa30.08■■■□□ 2.41
SMARCB1-202ENST00000344921 PIK3R4Q99570 1358 aa30.07■■■□□ 2.4
SMARCB1-202ENST00000344921 CHD2O14647 1828 aaKnown RBP30.07■■■□□ 2.4
SMARCB1-202ENST00000344921 PIK3C2GO75747 1445 aa30.06■■■□□ 2.4
SMARCB1-202ENST00000344921 METP08581 1390 aa30.06■■■□□ 2.4
SMARCB1-202ENST00000344921 CCER1Q8TC90 406 aaPredicted RBP30.05■■■□□ 2.4
SMARCB1-202ENST00000344921 AMOTL2Q9Y2J4 779 aa30.05■■■□□ 2.4
SMARCB1-202ENST00000344921 PROSER2Q86WR7 435 aaPredicted RBP30.03■■■□□ 2.4
SMARCB1-202ENST00000344921 L3MBTL2Q969R5 705 aa30.03■■■□□ 2.4
SMARCB1-202ENST00000344921 NRXN1Q9ULB1 1477 aa30.02■■■□□ 2.4
SMARCB1-202ENST00000344921 NWD1Q149M9 1564 aa30.02■■■□□ 2.4
SMARCB1-202ENST00000344921 CFAP70Q5T0N1 1121 aa30■■■□□ 2.39
SMARCB1-202ENST00000344921 SETD1AO15047 1707 aaKnown RBP30■■■□□ 2.39
SMARCB1-202ENST00000344921 PTPRUQ92729 1446 aa30■■■□□ 2.39
SMARCB1-202ENST00000344921 LRRC7Q96NW7 1537 aa30■■■□□ 2.39
SMARCB1-202ENST00000344921 NKTRP30414 1462 aaKnown RBP29.99■■■□□ 2.39
SMARCB1-202ENST00000344921 C14orf93Q9H972 538 aaKnown RBP29.99■■■□□ 2.39
SMARCB1-202ENST00000344921 TONSLQ96HA7 1378 aa29.99■■■□□ 2.39
SMARCB1-202ENST00000344921 TMEM132EQ6IEE7 984 aa29.97■■■□□ 2.39
SMARCB1-202ENST00000344921 RBM33Q96EV2 1170 aaKnown RBP29.97■■■□□ 2.39
SMARCB1-202ENST00000344921 CLSPNQ9HAW4 1339 aa29.96■■■□□ 2.39
SMARCB1-202ENST00000344921 LAMC1P11047 1609 aa29.94■■■□□ 2.38
SMARCB1-202ENST00000344921 IQSEC2Q5JU85 1478 aa29.94■■■□□ 2.38
SMARCB1-202ENST00000344921 TMEM94Q12767 1356 aa29.94■■■□□ 2.38
SMARCB1-202ENST00000344921 STK26Q9P289 416 aa29.93■■■□□ 2.38
SMARCB1-202ENST00000344921 XRN1Q8IZH2 1706 aaKnown RBP29.92■■■□□ 2.38
SMARCB1-202ENST00000344921 C14orf37Q86TY3 774 aa29.91■■■□□ 2.38
SMARCB1-202ENST00000344921 PRAG1Q86YV5 1406 aa29.88■■■□□ 2.37
SMARCB1-202ENST00000344921 XIRP1Q702N8 1843 aaKnown RBP29.87■■■□□ 2.37
SMARCB1-202ENST00000344921 ASXL1Q8IXJ9 1541 aa29.87■■■□□ 2.37
SMARCB1-202ENST00000344921 YTHDC2Q9H6S0 1430 aaKnown RBP29.85■■■□□ 2.37
SMARCB1-202ENST00000344921 LRPPRCP42704 1394 aaKnown RBP29.85■■■□□ 2.37
SMARCB1-202ENST00000344921 UBAP1LF5GYI3 381 aa29.85■■■□□ 2.37
SMARCB1-202ENST00000344921 ROBO2Q9HCK4 1378 aa29.82■■■□□ 2.36
SMARCB1-202ENST00000344921 FBXO41Q8TF61 875 aa29.82■■■□□ 2.36
SMARCB1-202ENST00000344921 MSH6P52701 1360 aa29.81■■■□□ 2.36
SMARCB1-202ENST00000344921 PTCH1Q13635 1447 aa29.81■■■□□ 2.36
SMARCB1-202ENST00000344921 TOM1O60784 492 aa29.81■■■□□ 2.36
SMARCB1-202ENST00000344921 ABCC11Q96J66 1382 aa29.81■■■□□ 2.36
SMARCB1-202ENST00000344921 NCOA3Q9Y6Q9 1424 aa29.8■■■□□ 2.36
SMARCB1-202ENST00000344921 ADGRB1O14514 1584 aa29.79■■■□□ 2.36
SMARCB1-202ENST00000344921 KIAA1210Q9ULL0 1709 aa29.79■■■□□ 2.36
SMARCB1-202ENST00000344921 NBPF1Q3BBV0 1214 aa29.77■■■□□ 2.36
SMARCB1-202ENST00000344921 TRAK1Q9UPV9 953 aa29.77■■■□□ 2.36
SMARCB1-202ENST00000344921 TECPR2O15040 1411 aa29.77■■■□□ 2.36
SMARCB1-202ENST00000344921 C19orf44Q9H6X5 657 aa29.76■■■□□ 2.36
SMARCB1-202ENST00000344921 KNDC1Q76NI1 1749 aa29.76■■■□□ 2.36
SMARCB1-202ENST00000344921 WAPLQ7Z5K2 1190 aa29.76■■■□□ 2.35
SMARCB1-202ENST00000344921 SCAF1Q9H7N4 1312 aaKnown RBP29.75■■■□□ 2.35
SMARCB1-202ENST00000344921 NBPF8Q3BBV2 869 aa29.75■■■□□ 2.35
SMARCB1-202ENST00000344921 TIMELESSQ9UNS1 1208 aa29.74■■■□□ 2.35
SMARCB1-202ENST00000344921 ATF3P18847 181 aa29.73■■■□□ 2.35
SMARCB1-202ENST00000344921 PIP4K2BP78356 416 aa29.73■■■□□ 2.35
SMARCB1-202ENST00000344921 POGKQ9P215 609 aa29.72■■■□□ 2.35
SMARCB1-202ENST00000344921 TRPM1Q7Z4N2 1603 aa29.71■■■□□ 2.35
SMARCB1-202ENST00000344921 SIRT1Q96EB6 747 aa29.71■■■□□ 2.35
SMARCB1-202ENST00000344921 PRAM1Q96QH2 718 aa29.71■■■□□ 2.35
SMARCB1-202ENST00000344921 ROCK2O75116 1388 aaKnown RBP29.7■■■□□ 2.35
SMARCB1-202ENST00000344921 SAFB2Q14151 953 aaKnown RBP eCLIP29.7■■■□□ 2.34
SMARCB1-202ENST00000344921 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.7■■■□□ 2.34
SMARCB1-202ENST00000344921 FAM135BQ49AJ0 1406 aa29.69■■■□□ 2.34
SMARCB1-202ENST00000344921 ADGRL3Q9HAR2 1447 aa29.69■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms