RNA–Protein interactions for RNA: ENST00000344726.9

HMGN3-202, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN3, Length 872 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-202ENST00000344726 XIRP1Q702N8 1843 aaKnown RBP21.94■■□□□ 1.1
HMGN3-202ENST00000344726 NAIPQ13075 1403 aa21.93■■□□□ 1.1
HMGN3-202ENST00000344726 RIMS2Q9UQ26 1411 aa21.89■■□□□ 1.1
HMGN3-202ENST00000344726 SLC26A8Q96RN1 970 aa21.89■■□□□ 1.09
HMGN3-202ENST00000344726 PIP4K2BP78356 416 aa21.88■■□□□ 1.09
HMGN3-202ENST00000344726 SPHKAPQ2M3C7 1700 aa21.88■■□□□ 1.09
HMGN3-202ENST00000344726 TOM1O60784 492 aa21.86■■□□□ 1.09
HMGN3-202ENST00000344726 HFM1A2PYH4 1435 aa21.86■■□□□ 1.09
HMGN3-202ENST00000344726 NWD1Q149M9 1564 aa21.86■■□□□ 1.09
HMGN3-202ENST00000344726 SCAF1Q9H7N4 1312 aaKnown RBP21.85■■□□□ 1.09
HMGN3-202ENST00000344726 PLEKHG1Q9ULL1 1385 aa21.85■■□□□ 1.09
HMGN3-202ENST00000344726 CHGAP10645 457 aaKnown RBP21.83■■□□□ 1.09
HMGN3-202ENST00000344726 HSPA1LP34931 641 aa21.83■■□□□ 1.09
HMGN3-202ENST00000344726 KCNA6P17658 529 aa21.81■■□□□ 1.08
HMGN3-202ENST00000344726 NUTM2DQ5VT03 806 aaPredicted RBP21.81■■□□□ 1.08
HMGN3-202ENST00000344726 DISP3Q9P2K9 1392 aa21.81■■□□□ 1.08
HMGN3-202ENST00000344726 CLTCL1P53675 1640 aa21.8■■□□□ 1.08
HMGN3-202ENST00000344726 ADAMTS13Q76LX8 1427 aa21.8■■□□□ 1.08
HMGN3-202ENST00000344726 TMEM94Q12767 1356 aa21.79■■□□□ 1.08
HMGN3-202ENST00000344726 CHD2O14647 1828 aaKnown RBP21.79■■□□□ 1.08
HMGN3-202ENST00000344726 NKTRP30414 1462 aaKnown RBP21.78■■□□□ 1.08
HMGN3-202ENST00000344726 PPP1R15AO75807 674 aaPredicted RBP21.78■■□□□ 1.08
HMGN3-202ENST00000344726 RBM33Q96EV2 1170 aaKnown RBP21.78■■□□□ 1.08
HMGN3-202ENST00000344726 TRPM2O94759 1503 aa21.78■■□□□ 1.08
HMGN3-202ENST00000344726 BCANQ96GW7 911 aa21.77■■□□□ 1.08
HMGN3-202ENST00000344726 NRXN3Q9Y4C0 1643 aa21.75■■□□□ 1.07
HMGN3-202ENST00000344726 ILDR2Q71H61 639 aa21.73■■□□□ 1.07
HMGN3-202ENST00000344726 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.73■■□□□ 1.07
HMGN3-202ENST00000344726 DIP2AQ14689 1571 aa21.73■■□□□ 1.07
HMGN3-202ENST00000344726 HDGFP51858 240 aaKnown RBP21.72■■□□□ 1.07
HMGN3-202ENST00000344726 PROSER2Q86WR7 435 aaPredicted RBP21.72■■□□□ 1.07
HMGN3-202ENST00000344726 TRIM52Q96A61 297 aa21.72■■□□□ 1.07
HMGN3-202ENST00000344726 TBX22Q9Y458 520 aa21.71■■□□□ 1.07
HMGN3-202ENST00000344726 NEXMIFQ5QGS0 1516 aa21.7■■□□□ 1.07
HMGN3-202ENST00000344726 MED1Q15648 1581 aaPredicted RBP21.69■■□□□ 1.06
HMGN3-202ENST00000344726 SETBP1Q9Y6X0 1596 aa21.69■■□□□ 1.06
HMGN3-202ENST00000344726 PTPRUQ92729 1446 aa21.68■■□□□ 1.06
HMGN3-202ENST00000344726 KIF1BO60333 1816 aa21.68■■□□□ 1.06
HMGN3-202ENST00000344726 ROBO1Q9Y6N7 1651 aa21.66■■□□□ 1.06
HMGN3-202ENST00000344726 SLC4A1APQ9BWU0 796 aaKnown RBP21.65■■□□□ 1.06
HMGN3-202ENST00000344726 FAM135BQ49AJ0 1406 aa21.64■■□□□ 1.06
HMGN3-202ENST00000344726 PIK3R4Q99570 1358 aa21.64■■□□□ 1.06
HMGN3-202ENST00000344726 ZNF326Q5BKZ1 582 aaKnown RBP21.64■■□□□ 1.05
HMGN3-202ENST00000344726 XRN1Q8IZH2 1706 aaKnown RBP21.63■■□□□ 1.05
HMGN3-202ENST00000344726 MSH6P52701 1360 aa21.61■■□□□ 1.05
HMGN3-202ENST00000344726 METP08581 1390 aa21.61■■□□□ 1.05
HMGN3-202ENST00000344726 SETD5Q9C0A6 1442 aa21.59■■□□□ 1.05
HMGN3-202ENST00000344726 AMOTL2Q9Y2J4 779 aa21.59■■□□□ 1.05
HMGN3-202ENST00000344726 SETD1AO15047 1707 aaKnown RBP21.58■■□□□ 1.05
HMGN3-202ENST00000344726 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.58■■□□□ 1.05
HMGN3-202ENST00000344726 NCOA3Q9Y6Q9 1424 aa21.57■■□□□ 1.04
HMGN3-202ENST00000344726 PPLO60437 1756 aa21.57■■□□□ 1.04
HMGN3-202ENST00000344726 MPHOSPH9Q99550 1183 aa21.55■■□□□ 1.04
HMGN3-202ENST00000344726 SLAIN2Q9P270 581 aa21.54■■□□□ 1.04
HMGN3-202ENST00000344726 RAB3GAP2Q9H2M9 1393 aa21.52■■□□□ 1.04
HMGN3-202ENST00000344726 PHLPP1O60346 1717 aa21.5■■□□□ 1.03
HMGN3-202ENST00000344726 SPATA31E1Q6ZUB1 1445 aa21.5■■□□□ 1.03
HMGN3-202ENST00000344726 IFT172Q9UG01 1749 aa21.49■■□□□ 1.03
HMGN3-202ENST00000344726 C14orf37Q86TY3 774 aa21.49■■□□□ 1.03
HMGN3-202ENST00000344726 C19orf44Q9H6X5 657 aa21.49■■□□□ 1.03
HMGN3-202ENST00000344726 COL16A1Q07092 1604 aaPredicted RBP21.48■■□□□ 1.03
HMGN3-202ENST00000344726 CCDC144AA2RUR9 1427 aa21.48■■□□□ 1.03
HMGN3-202ENST00000344726 NALCNQ8IZF0 1738 aa21.48■■□□□ 1.03
HMGN3-202ENST00000344726 RPGRIP1LQ68CZ1 1315 aa21.48■■□□□ 1.03
HMGN3-202ENST00000344726 SOCS7O14512 581 aa21.46■■□□□ 1.03
HMGN3-202ENST00000344726 VGFO15240 615 aaPredicted RBP21.46■■□□□ 1.03
HMGN3-202ENST00000344726 CADPS2Q86UW7 1296 aa21.45■■□□□ 1.02
HMGN3-202ENST00000344726 DCCP43146 1447 aa21.45■■□□□ 1.02
HMGN3-202ENST00000344726 ACIN1Q9UKV3 1341 aaKnown RBP21.44■■□□□ 1.02
HMGN3-202ENST00000344726 AHDC1Q5TGY3 1603 aaPredicted RBP21.44■■□□□ 1.02
HMGN3-202ENST00000344726 ATF3P18847 181 aa21.43■■□□□ 1.02
HMGN3-202ENST00000344726 ADGRF5Q8IZF2 1346 aa21.43■■□□□ 1.02
HMGN3-202ENST00000344726 ROBO2Q9HCK4 1378 aa21.43■■□□□ 1.02
HMGN3-202ENST00000344726 MST1RQ04912 1400 aa21.43■■□□□ 1.02
HMGN3-202ENST00000344726 PTCH1Q13635 1447 aa21.43■■□□□ 1.02
HMGN3-202ENST00000344726 ADGRL3Q9HAR2 1447 aa21.43■■□□□ 1.02
HMGN3-202ENST00000344726 PRAG1Q86YV5 1406 aa21.42■■□□□ 1.02
HMGN3-202ENST00000344726 RGL3Q3MIN7 710 aa21.41■■□□□ 1.02
HMGN3-202ENST00000344726 RGS17Q9UGC6 210 aaPredicted RBP21.41■■□□□ 1.02
HMGN3-202ENST00000344726 ASXL1Q8IXJ9 1541 aa21.4■■□□□ 1.02
HMGN3-202ENST00000344726 BRINP3Q76B58 766 aa21.39■■□□□ 1.01
HMGN3-202ENST00000344726 NHSL1Q5SYE7 1610 aa21.37■■□□□ 1.01
HMGN3-202ENST00000344726 PIK3C2GO75747 1445 aa21.36■■□□□ 1.01
HMGN3-202ENST00000344726 ANKRD30BQ9BXX2 1392 aa21.36■■□□□ 1.01
HMGN3-202ENST00000344726 JCADQ9P266 1359 aa21.36■■□□□ 1.01
HMGN3-202ENST00000344726 LRP6O75581 1613 aa21.34■■□□□ 1.01
HMGN3-202ENST00000344726 HRCP23327 699 aa21.34■■□□□ 1.01
HMGN3-202ENST00000344726 SHPRHQ149N8 1683 aa21.33■■□□□ 1
HMGN3-202ENST00000344726 C1orf167Q5SNV9 1468 aa21.32■■□□□ 1
HMGN3-202ENST00000344726 NRXN1Q9ULB1 1477 aa21.32■■□□□ 1
HMGN3-202ENST00000344726 TECPR2O15040 1411 aa21.3■■□□□ 1
HMGN3-202ENST00000344726 KNDC1Q76NI1 1749 aa21.3■■□□□ 1
HMGN3-202ENST00000344726 DDX17Q92841 729 aaKnown RBP21.3■■□□□ 1
HMGN3-202ENST00000344726 MYOM2P54296 1465 aa21.29■■□□□ 1
HMGN3-202ENST00000344726 TMEM132EQ6IEE7 984 aa21.28■■□□□ 1
HMGN3-202ENST00000344726 LRPPRCP42704 1394 aaKnown RBP21.27■■□□□ 1
HMGN3-202ENST00000344726 LAMC1P11047 1609 aa21.27■■□□□ 1
HMGN3-202ENST00000344726 CDC42BPGQ6DT37 1551 aa21.27■□□□□ 0.99
HMGN3-202ENST00000344726 PLEKHH1Q9ULM0 1364 aa21.26■□□□□ 0.99
HMGN3-202ENST00000344726 POTEAQ6S8J7 498 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms