RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 SAMD9LQ8IVG5 1584 aa12.52□□□□□ -0.41
HOXA1-201ENST00000343060 NPC1L1Q9UHC9 1359 aa12.52□□□□□ -0.41
HOXA1-201ENST00000343060 TSPY4P0CV99 314 aa12.51□□□□□ -0.41
HOXA1-201ENST00000343060 TSPY10P0CW01 314 aa12.51□□□□□ -0.41
HOXA1-201ENST00000343060 PPP2R1AP30153 589 aa12.51□□□□□ -0.41
HOXA1-201ENST00000343060 PREX2Q70Z35 1606 aa12.51□□□□□ -0.41
HOXA1-201ENST00000343060 NINLQ9Y2I6 1382 aa12.51□□□□□ -0.41
HOXA1-201ENST00000343060 ASXL1Q8IXJ9 1541 aa12.5□□□□□ -0.41
HOXA1-201ENST00000343060 RGS3P49796 1198 aa12.49□□□□□ -0.41
HOXA1-201ENST00000343060 WDR43Q15061 677 aaKnown RBP eCLIP12.49□□□□□ -0.41
HOXA1-201ENST00000343060 MAPK8IP3Q9UPT6 1336 aa12.49□□□□□ -0.41
HOXA1-201ENST00000343060 ATP10BO94823 1461 aa12.49□□□□□ -0.41
HOXA1-201ENST00000343060 MYOM1P52179 1685 aa12.49□□□□□ -0.41
HOXA1-201ENST00000343060 CARMIL2Q6F5E8 1435 aa12.49□□□□□ -0.41
HOXA1-201ENST00000343060 EIF5BO60841 1220 aaKnown RBP12.49□□□□□ -0.41
HOXA1-201ENST00000343060 AMER1Q5JTC6 1135 aaPredicted RBP12.49□□□□□ -0.41
HOXA1-201ENST00000343060 L1TD1Q5T7N2 865 aaKnown RBP12.49□□□□□ -0.41
HOXA1-201ENST00000343060 CDC42BPBQ9Y5S2 1711 aa12.48□□□□□ -0.41
HOXA1-201ENST00000343060 POGKQ9P215 609 aa12.48□□□□□ -0.41
HOXA1-201ENST00000343060 MADDQ8WXG6 1647 aa12.48□□□□□ -0.41
HOXA1-201ENST00000343060 ANTXR1Q9H6X2 564 aa12.48□□□□□ -0.41
HOXA1-201ENST00000343060 BECN1Q14457 450 aa12.47□□□□□ -0.41
HOXA1-201ENST00000343060 CGNL1Q0VF96 1302 aa12.47□□□□□ -0.41
HOXA1-201ENST00000343060 RRAGDQ9NQL2 400 aaPredicted RBP12.46□□□□□ -0.41
HOXA1-201ENST00000343060 PLEKHD1A6NEE1 506 aa12.46□□□□□ -0.42
HOXA1-201ENST00000343060 PDE3AQ14432 1141 aa12.46□□□□□ -0.42
HOXA1-201ENST00000343060 NGEFQ8N5V2 710 aa12.46□□□□□ -0.42
HOXA1-201ENST00000343060 RSPH4AQ5TD94 716 aa12.45□□□□□ -0.42
HOXA1-201ENST00000343060 IGHDP01880 384 aa12.45□□□□□ -0.42
HOXA1-201ENST00000343060 SCAPERQ9BY12 1400 aa12.45□□□□□ -0.42
HOXA1-201ENST00000343060 KNSTRNQ9Y448 316 aa12.44□□□□□ -0.42
HOXA1-201ENST00000343060 DUOX2Q9NRD8 1548 aa12.44□□□□□ -0.42
HOXA1-201ENST00000343060 E9PSI1 815 aa12.44□□□□□ -0.42
HOXA1-201ENST00000343060 SPHKAPQ2M3C7 1700 aa12.43□□□□□ -0.42
HOXA1-201ENST00000343060 FSD2A1L4K1 749 aa12.43□□□□□ -0.42
HOXA1-201ENST00000343060 HNRNPMP52272 730 aaKnown RBP eCLIP12.43□□□□□ -0.42
HOXA1-201ENST00000343060 RGL3Q3MIN7 710 aa12.43□□□□□ -0.42
HOXA1-201ENST00000343060 SPINK5Q9NQ38 1064 aaPredicted RBP12.43□□□□□ -0.42
HOXA1-201ENST00000343060 SEC24BO95487 1268 aa12.42□□□□□ -0.42
HOXA1-201ENST00000343060 AAMPQ13685 434 aa12.42□□□□□ -0.42
HOXA1-201ENST00000343060 CLUAP1Q96AJ1 413 aa12.42□□□□□ -0.42
HOXA1-201ENST00000343060 SYCP2Q9BX26 1530 aa12.42□□□□□ -0.42
HOXA1-201ENST00000343060 SCAF11Q99590 1463 aaKnown RBP12.41□□□□□ -0.42
HOXA1-201ENST00000343060 BCAR3O75815 825 aa12.41□□□□□ -0.42
HOXA1-201ENST00000343060 TBC1D32Q96NH3 1257 aa12.41□□□□□ -0.42
HOXA1-201ENST00000343060 CDCA8Q53HL2 280 aa12.41□□□□□ -0.42
HOXA1-201ENST00000343060 KDM5AP29375 1690 aaKnown RBP12.4□□□□□ -0.42
HOXA1-201ENST00000343060 TTC37Q6PGP7 1564 aa12.4□□□□□ -0.42
HOXA1-201ENST00000343060 CEP152O94986 1710 aa12.39□□□□□ -0.43
HOXA1-201ENST00000343060 KIAA1210Q9ULL0 1709 aa12.39□□□□□ -0.43
HOXA1-201ENST00000343060 CLCN1P35523 988 aa12.39□□□□□ -0.43
HOXA1-201ENST00000343060 SLKQ9H2G2 1235 aaPredicted RBP12.38□□□□□ -0.43
HOXA1-201ENST00000343060 RTEL1-TNFRSF6BF6WH68 1400 aa12.38□□□□□ -0.43
HOXA1-201ENST00000343060 APAF1O14727 1248 aa12.38□□□□□ -0.43
HOXA1-201ENST00000343060 TBC1D2Q9BYX2 928 aa12.38□□□□□ -0.43
HOXA1-201ENST00000343060 XRCC6P12956 609 aaKnown RBP eCLIP12.37□□□□□ -0.43
HOXA1-201ENST00000343060 DNAJC5BQ9UF47 199 aa12.37□□□□□ -0.43
HOXA1-201ENST00000343060 CENPJQ9HC77 1338 aaPredicted RBP12.37□□□□□ -0.43
HOXA1-201ENST00000343060 CCDC146Q8IYE0 955 aa12.37□□□□□ -0.43
HOXA1-201ENST00000343060 JPH4Q96JJ6 628 aa12.37□□□□□ -0.43
HOXA1-201ENST00000343060 TRPM2O94759 1503 aa12.37□□□□□ -0.43
HOXA1-201ENST00000343060 PMFBP1Q8TBY8 1022 aa12.36□□□□□ -0.43
HOXA1-201ENST00000343060 SHPRHQ149N8 1683 aa12.36□□□□□ -0.43
HOXA1-201ENST00000343060 IQSEC2Q5JU85 1478 aa12.36□□□□□ -0.43
HOXA1-201ENST00000343060 GOLGA6L3A6NEY3 463 aa12.36□□□□□ -0.43
HOXA1-201ENST00000343060 STAC3Q96MF2 364 aa12.36□□□□□ -0.43
HOXA1-201ENST00000343060 DMRT2Q9Y5R5 561 aa12.36□□□□□ -0.43
HOXA1-201ENST00000343060 MCM4P33991 863 aa12.35□□□□□ -0.43
HOXA1-201ENST00000343060 UPF2Q9HAU5 1272 aaKnown RBP12.35□□□□□ -0.43
HOXA1-201ENST00000343060 NEURL4Q96JN8 1562 aa12.35□□□□□ -0.43
HOXA1-201ENST00000343060 POLR3AO14802 1390 aaPredicted RBP12.34□□□□□ -0.43
HOXA1-201ENST00000343060 SHROOM2Q13796 1616 aa12.34□□□□□ -0.43
HOXA1-201ENST00000343060 PANK1Q8TE04 598 aa12.33□□□□□ -0.44
HOXA1-201ENST00000343060 ISY1Q9ULR0 285 aaKnown RBP12.33□□□□□ -0.44
HOXA1-201ENST00000343060 COG6Q9Y2V7 657 aa12.33□□□□□ -0.44
HOXA1-201ENST00000343060 ERCC6Q03468 1493 aa12.33□□□□□ -0.44
HOXA1-201ENST00000343060 ARHGAP5Q13017 1502 aa12.32□□□□□ -0.44
HOXA1-201ENST00000343060 GLIPR1L2Q4G1C9 344 aa12.32□□□□□ -0.44
HOXA1-201ENST00000343060 PNNQ9H307 717 aaKnown RBP12.32□□□□□ -0.44
HOXA1-201ENST00000343060 PTPRTO14522 1441 aa12.32□□□□□ -0.44
HOXA1-201ENST00000343060 NCOA3Q9Y6Q9 1424 aa12.32□□□□□ -0.44
HOXA1-201ENST00000343060 KANK1Q14678 1352 aa12.32□□□□□ -0.44
HOXA1-201ENST00000343060 WWC1Q8IX03 1113 aa12.32□□□□□ -0.44
HOXA1-201ENST00000343060 CHMP7Q8WUX9 453 aaPredicted RBP12.32□□□□□ -0.44
HOXA1-201ENST00000343060 PHF23Q9BUL5 403 aaPredicted RBP12.32□□□□□ -0.44
HOXA1-201ENST00000343060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.31□□□□□ -0.44
HOXA1-201ENST00000343060 MYO3AQ8NEV4 1616 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 ERVK-7P63135 1459 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 MRE11P49959 708 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 CHMP5Q9NZZ3 219 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 PDZRN3Q9UPQ7 1066 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 PCDHB15Q9Y5E8 787 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 CLTCL1P53675 1640 aa12.31□□□□□ -0.44
HOXA1-201ENST00000343060 RRP9O43818 475 aaKnown RBP12.31□□□□□ -0.44
HOXA1-201ENST00000343060 RARSP54136 660 aaKnown RBP12.31□□□□□ -0.44
HOXA1-201ENST00000343060 PANK2Q9BZ23 570 aa12.3□□□□□ -0.44
HOXA1-201ENST00000343060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.3□□□□□ -0.44
HOXA1-201ENST00000343060 CANXP27824 592 aaKnown RBP12.29□□□□□ -0.44
HOXA1-201ENST00000343060 SLC24A1O60721 1099 aa12.29□□□□□ -0.44
HOXA1-201ENST00000343060 ZNF692Q9BU19 519 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms