RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 KCNA6P17658 529 aa23.15■■□□□ 1.3
VAPA-201ENST00000340541 HDGFP51858 240 aaKnown RBP23.14■■□□□ 1.29
VAPA-201ENST00000340541 MED1Q15648 1581 aaPredicted RBP23.14■■□□□ 1.29
VAPA-201ENST00000340541 SPHKAPQ2M3C7 1700 aa23.12■■□□□ 1.29
VAPA-201ENST00000340541 TMEM131LA2VDJ0 1609 aa23.11■■□□□ 1.29
VAPA-201ENST00000340541 MYO5BQ9ULV0 1848 aa23.11■■□□□ 1.29
VAPA-201ENST00000340541 TRIM52Q96A61 297 aa23.09■■□□□ 1.29
VAPA-201ENST00000340541 SLC26A8Q96RN1 970 aa23.09■■□□□ 1.29
VAPA-201ENST00000340541 XIRP1Q702N8 1843 aaKnown RBP23.09■■□□□ 1.29
VAPA-201ENST00000340541 FAM135BQ49AJ0 1406 aa23.08■■□□□ 1.28
VAPA-201ENST00000340541 PROSER2Q86WR7 435 aaPredicted RBP23.07■■□□□ 1.28
VAPA-201ENST00000340541 TMEM94Q12767 1356 aa23.06■■□□□ 1.28
VAPA-201ENST00000340541 SETD5Q9C0A6 1442 aa23.06■■□□□ 1.28
VAPA-201ENST00000340541 TRPM2O94759 1503 aa23.04■■□□□ 1.28
VAPA-201ENST00000340541 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.04■■□□□ 1.28
VAPA-201ENST00000340541 ZFYVE9O95405 1425 aa23.04■■□□□ 1.28
VAPA-201ENST00000340541 PLEKHG1Q9ULL1 1385 aa23.03■■□□□ 1.28
VAPA-201ENST00000340541 BCANQ96GW7 911 aa23.03■■□□□ 1.28
VAPA-201ENST00000340541 PHF23Q9BUL5 403 aaPredicted RBP23.03■■□□□ 1.28
VAPA-201ENST00000340541 NKTRP30414 1462 aaKnown RBP23.03■■□□□ 1.28
VAPA-201ENST00000340541 SLC4A1APQ9BWU0 796 aaKnown RBP23.02■■□□□ 1.28
VAPA-201ENST00000340541 CLTCL1P53675 1640 aa23.01■■□□□ 1.27
VAPA-201ENST00000340541 TBX22Q9Y458 520 aa23.01■■□□□ 1.27
VAPA-201ENST00000340541 RIMS2Q9UQ26 1411 aa23■■□□□ 1.27
VAPA-201ENST00000340541 PPP1R15AO75807 674 aaPredicted RBP23■■□□□ 1.27
VAPA-201ENST00000340541 NWD1Q149M9 1564 aa23■■□□□ 1.27
VAPA-201ENST00000340541 RAB3GAP2Q9H2M9 1393 aa23■■□□□ 1.27
VAPA-201ENST00000340541 CHGAP10645 457 aaKnown RBP22.97■■□□□ 1.27
VAPA-201ENST00000340541 SENP3Q9H4L4 574 aaPredicted RBP22.97■■□□□ 1.27
VAPA-201ENST00000340541 MPHOSPH9Q99550 1183 aa22.96■■□□□ 1.27
VAPA-201ENST00000340541 MSH6P52701 1360 aa22.96■■□□□ 1.27
VAPA-201ENST00000340541 NCOA3Q9Y6Q9 1424 aa22.96■■□□□ 1.27
VAPA-201ENST00000340541 CHD2O14647 1828 aaKnown RBP22.95■■□□□ 1.26
VAPA-201ENST00000340541 ACIN1Q9UKV3 1341 aaKnown RBP22.94■■□□□ 1.26
VAPA-201ENST00000340541 FOXD1Q16676 465 aa22.94■■□□□ 1.26
VAPA-201ENST00000340541 SLAIN2Q9P270 581 aa22.93■■□□□ 1.26
VAPA-201ENST00000340541 PIK3R4Q99570 1358 aa22.92■■□□□ 1.26
VAPA-201ENST00000340541 RBM33Q96EV2 1170 aaKnown RBP22.92■■□□□ 1.26
VAPA-201ENST00000340541 KIF1BO60333 1816 aa22.92■■□□□ 1.26
VAPA-201ENST00000340541 ROBO1Q9Y6N7 1651 aa22.89■■□□□ 1.25
VAPA-201ENST00000340541 DIP2AQ14689 1571 aa22.89■■□□□ 1.25
VAPA-201ENST00000340541 NUTM2DQ5VT03 806 aaPredicted RBP22.88■■□□□ 1.25
VAPA-201ENST00000340541 ADAMTS13Q76LX8 1427 aa22.87■■□□□ 1.25
VAPA-201ENST00000340541 NEXMIFQ5QGS0 1516 aa22.87■■□□□ 1.25
VAPA-201ENST00000340541 HRCP23327 699 aa22.86■■□□□ 1.25
VAPA-201ENST00000340541 RGS17Q9UGC6 210 aaPredicted RBP22.86■■□□□ 1.25
VAPA-201ENST00000340541 C19orf44Q9H6X5 657 aa22.84■■□□□ 1.25
VAPA-201ENST00000340541 NRXN3Q9Y4C0 1643 aa22.83■■□□□ 1.25
VAPA-201ENST00000340541 ZNF326Q5BKZ1 582 aaKnown RBP22.83■■□□□ 1.25
VAPA-201ENST00000340541 CADPS2Q86UW7 1296 aa22.83■■□□□ 1.25
VAPA-201ENST00000340541 CCDC144AA2RUR9 1427 aa22.82■■□□□ 1.24
VAPA-201ENST00000340541 SETBP1Q9Y6X0 1596 aa22.8■■□□□ 1.24
VAPA-201ENST00000340541 AMOTL2Q9Y2J4 779 aa22.8■■□□□ 1.24
VAPA-201ENST00000340541 C14orf37Q86TY3 774 aa22.79■■□□□ 1.24
VAPA-201ENST00000340541 SPATA31E1Q6ZUB1 1445 aa22.79■■□□□ 1.24
VAPA-201ENST00000340541 JCADQ9P266 1359 aa22.78■■□□□ 1.24
VAPA-201ENST00000340541 ATF3P18847 181 aa22.78■■□□□ 1.24
VAPA-201ENST00000340541 PPLO60437 1756 aa22.77■■□□□ 1.24
VAPA-201ENST00000340541 PHLPP1O60346 1717 aa22.76■■□□□ 1.23
VAPA-201ENST00000340541 RPGRIP1LQ68CZ1 1315 aa22.75■■□□□ 1.23
VAPA-201ENST00000340541 ANKRD30BQ9BXX2 1392 aa22.74■■□□□ 1.23
VAPA-201ENST00000340541 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.74■■□□□ 1.23
VAPA-201ENST00000340541 PTPRUQ92729 1446 aa22.73■■□□□ 1.23
VAPA-201ENST00000340541 IFT172Q9UG01 1749 aa22.72■■□□□ 1.23
VAPA-201ENST00000340541 DCCP43146 1447 aa22.72■■□□□ 1.23
VAPA-201ENST00000340541 POTEAQ6S8J7 498 aa22.71■■□□□ 1.23
VAPA-201ENST00000340541 SPATA31A6Q5VVP1 1343 aa22.71■■□□□ 1.23
VAPA-201ENST00000340541 SETD1AO15047 1707 aaKnown RBP22.7■■□□□ 1.22
VAPA-201ENST00000340541 COL16A1Q07092 1604 aaPredicted RBP22.69■■□□□ 1.22
VAPA-201ENST00000340541 VGFO15240 615 aaPredicted RBP22.69■■□□□ 1.22
VAPA-201ENST00000340541 METP08581 1390 aa22.68■■□□□ 1.22
VAPA-201ENST00000340541 XRN1Q8IZH2 1706 aaKnown RBP22.68■■□□□ 1.22
VAPA-201ENST00000340541 AHDC1Q5TGY3 1603 aaPredicted RBP22.68■■□□□ 1.22
VAPA-201ENST00000340541 RGL3Q3MIN7 710 aa22.67■■□□□ 1.22
VAPA-201ENST00000340541 BRINP3Q76B58 766 aa22.65■■□□□ 1.22
VAPA-201ENST00000340541 ADGRF5Q8IZF2 1346 aa22.64■■□□□ 1.22
VAPA-201ENST00000340541 SHPRHQ149N8 1683 aa22.59■■□□□ 1.21
VAPA-201ENST00000340541 TRIM26Q12899 539 aaPredicted RBP22.59■■□□□ 1.21
VAPA-201ENST00000340541 ZNF772Q68DY9 489 aaPredicted RBP22.59■■□□□ 1.21
VAPA-201ENST00000340541 NRXN1Q9ULB1 1477 aa22.59■■□□□ 1.21
VAPA-201ENST00000340541 PIK3C2GO75747 1445 aa22.58■■□□□ 1.21
VAPA-201ENST00000340541 MST1RQ04912 1400 aa22.58■■□□□ 1.21
VAPA-201ENST00000340541 MYOM2P54296 1465 aa22.58■■□□□ 1.2
VAPA-201ENST00000340541 ADGRL3Q9HAR2 1447 aa22.57■■□□□ 1.2
VAPA-201ENST00000340541 MEX3CQ5U5Q3 659 aaKnown RBP22.57■■□□□ 1.2
VAPA-201ENST00000340541 LRRC59Q96AG4 307 aaKnown RBP22.56■■□□□ 1.2
VAPA-201ENST00000340541 ASXL1Q8IXJ9 1541 aa22.56■■□□□ 1.2
VAPA-201ENST00000340541 PRAG1Q86YV5 1406 aa22.56■■□□□ 1.2
VAPA-201ENST00000340541 LRP6O75581 1613 aa22.55■■□□□ 1.2
VAPA-201ENST00000340541 PTCH1Q13635 1447 aa22.52■■□□□ 1.2
VAPA-201ENST00000340541 DHX57Q6P158 1386 aaKnown RBP22.5■■□□□ 1.19
VAPA-201ENST00000340541 NHSL1Q5SYE7 1610 aa22.5■■□□□ 1.19
VAPA-201ENST00000340541 ROBO2Q9HCK4 1378 aa22.5■■□□□ 1.19
VAPA-201ENST00000340541 C14orf93Q9H972 538 aaKnown RBP22.48■■□□□ 1.19
VAPA-201ENST00000340541 NALCNQ8IZF0 1738 aa22.48■■□□□ 1.19
VAPA-201ENST00000340541 LAMC1P11047 1609 aa22.47■■□□□ 1.19
VAPA-201ENST00000340541 NUTM2BA6NNL0 878 aaPredicted RBP22.47■■□□□ 1.19
VAPA-201ENST00000340541 NUTM2EB1AL46 878 aaPredicted RBP22.47■■□□□ 1.19
VAPA-201ENST00000340541 NUTM2AQ8IVF1 878 aaPredicted RBP22.47■■□□□ 1.19
VAPA-201ENST00000340541 TECPR2O15040 1411 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms