RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 LTBP4Q8N2S1 1624 aa22.52■■□□□ 1.2
UBE3B-201ENST00000340074 CCDC144AA2RUR9 1427 aa22.52■■□□□ 1.2
UBE3B-201ENST00000340074 ZNF335Q9H4Z2 1342 aaPredicted RBP22.51■■□□□ 1.19
UBE3B-201ENST00000340074 HDGFP51858 240 aaKnown RBP22.51■■□□□ 1.19
UBE3B-201ENST00000340074 ZNF326Q5BKZ1 582 aaKnown RBP22.5■■□□□ 1.19
UBE3B-201ENST00000340074 NUTM2DQ5VT03 806 aaPredicted RBP22.5■■□□□ 1.19
UBE3B-201ENST00000340074 PPP1R15AO75807 674 aaPredicted RBP22.48■■□□□ 1.19
UBE3B-201ENST00000340074 ABCF1Q8NE71 845 aaKnown RBP eCLIP22.48■■□□□ 1.19
UBE3B-201ENST00000340074 STRCP1A6NGW2 1772 aa22.48■■□□□ 1.19
UBE3B-201ENST00000340074 NEXMIFQ5QGS0 1516 aa22.48■■□□□ 1.19
UBE3B-201ENST00000340074 SENP3Q9H4L4 574 aaPredicted RBP22.48■■□□□ 1.19
UBE3B-201ENST00000340074 PLEKHG1Q9ULL1 1385 aa22.47■■□□□ 1.19
UBE3B-201ENST00000340074 PPLO60437 1756 aa22.46■■□□□ 1.19
UBE3B-201ENST00000340074 BCANQ96GW7 911 aa22.45■■□□□ 1.18
UBE3B-201ENST00000340074 CERKQ8TCT0 537 aa22.44■■□□□ 1.18
UBE3B-201ENST00000340074 ANKRD30BQ9BXX2 1392 aa22.43■■□□□ 1.18
UBE3B-201ENST00000340074 SLC26A8Q96RN1 970 aa22.43■■□□□ 1.18
UBE3B-201ENST00000340074 IFT172Q9UG01 1749 aa22.43■■□□□ 1.18
UBE3B-201ENST00000340074 SPATA31E1Q6ZUB1 1445 aa22.42■■□□□ 1.18
UBE3B-201ENST00000340074 NRXN3Q9Y4C0 1643 aa22.4■■□□□ 1.18
UBE3B-201ENST00000340074 CHD2O14647 1828 aaKnown RBP22.4■■□□□ 1.18
UBE3B-201ENST00000340074 CPS1P31327 1500 aa22.4■■□□□ 1.18
UBE3B-201ENST00000340074 RGL3Q3MIN7 710 aa22.4■■□□□ 1.18
UBE3B-201ENST00000340074 SETBP1Q9Y6X0 1596 aa22.38■■□□□ 1.17
UBE3B-201ENST00000340074 RPGRIP1LQ68CZ1 1315 aa22.38■■□□□ 1.17
UBE3B-201ENST00000340074 ADAMTS13Q76LX8 1427 aa22.38■■□□□ 1.17
UBE3B-201ENST00000340074 DIP2AQ14689 1571 aa22.37■■□□□ 1.17
UBE3B-201ENST00000340074 VGFO15240 615 aaPredicted RBP22.34■■□□□ 1.17
UBE3B-201ENST00000340074 TBX22Q9Y458 520 aa22.34■■□□□ 1.17
UBE3B-201ENST00000340074 NWD1Q149M9 1564 aa22.33■■□□□ 1.17
UBE3B-201ENST00000340074 IQSEC2Q5JU85 1478 aa22.33■■□□□ 1.16
UBE3B-201ENST00000340074 XIRP1Q702N8 1843 aaKnown RBP22.33■■□□□ 1.16
UBE3B-201ENST00000340074 SETD1AO15047 1707 aaKnown RBP22.31■■□□□ 1.16
UBE3B-201ENST00000340074 KCNA6P17658 529 aa22.31■■□□□ 1.16
UBE3B-201ENST00000340074 LRRC7Q96NW7 1537 aa22.3■■□□□ 1.16
UBE3B-201ENST00000340074 DHX57Q6P158 1386 aaKnown RBP22.28■■□□□ 1.16
UBE3B-201ENST00000340074 PCGF6Q9BYE7 350 aa22.28■■□□□ 1.16
UBE3B-201ENST00000340074 ALKQ9UM73 1620 aa22.28■■□□□ 1.16
UBE3B-201ENST00000340074 ADGRF5Q8IZF2 1346 aa22.27■■□□□ 1.16
UBE3B-201ENST00000340074 PIK3R4Q99570 1358 aa22.27■■□□□ 1.16
UBE3B-201ENST00000340074 FBXO41Q8TF61 875 aa22.26■■□□□ 1.15
UBE3B-201ENST00000340074 NKTRP30414 1462 aaKnown RBP22.26■■□□□ 1.15
UBE3B-201ENST00000340074 PTPRUQ92729 1446 aa22.25■■□□□ 1.15
UBE3B-201ENST00000340074 METP08581 1390 aa22.24■■□□□ 1.15
UBE3B-201ENST00000340074 XRN1Q8IZH2 1706 aaKnown RBP22.24■■□□□ 1.15
UBE3B-201ENST00000340074 MYOM2P54296 1465 aa22.23■■□□□ 1.15
UBE3B-201ENST00000340074 ILDR1Q86SU0 546 aaPredicted RBP22.23■■□□□ 1.15
UBE3B-201ENST00000340074 PROSER2Q86WR7 435 aaPredicted RBP22.22■■□□□ 1.15
UBE3B-201ENST00000340074 PIK3C2GO75747 1445 aa22.22■■□□□ 1.15
UBE3B-201ENST00000340074 AMOTL2Q9Y2J4 779 aa22.21■■□□□ 1.15
UBE3B-201ENST00000340074 NRXN1Q9ULB1 1477 aa22.2■■□□□ 1.15
UBE3B-201ENST00000340074 RBM33Q96EV2 1170 aaKnown RBP22.2■■□□□ 1.14
UBE3B-201ENST00000340074 TMEM94Q12767 1356 aa22.19■■□□□ 1.14
UBE3B-201ENST00000340074 DCAF11Q8TEB1 546 aa22.18■■□□□ 1.14
UBE3B-201ENST00000340074 SIN3AQ96ST3 1273 aa22.18■■□□□ 1.14
UBE3B-201ENST00000340074 KDM2AQ9Y2K7 1162 aa22.17■■□□□ 1.14
UBE3B-201ENST00000340074 LAMC1P11047 1609 aa22.17■■□□□ 1.14
UBE3B-201ENST00000340074 UBAP1LF5GYI3 381 aa22.16■■□□□ 1.14
UBE3B-201ENST00000340074 ASXL1Q8IXJ9 1541 aa22.14■■□□□ 1.13
UBE3B-201ENST00000340074 NEUROD1Q13562 356 aa22.13■■□□□ 1.13
UBE3B-201ENST00000340074 STAC3Q96MF2 364 aa22.12■■□□□ 1.13
UBE3B-201ENST00000340074 C14orf93Q9H972 538 aaKnown RBP22.12■■□□□ 1.13
UBE3B-201ENST00000340074 TOM1O60784 492 aa22.11■■□□□ 1.13
UBE3B-201ENST00000340074 CFAP70Q5T0N1 1121 aa22.11■■□□□ 1.13
UBE3B-201ENST00000340074 KNDC1Q76NI1 1749 aa22.1■■□□□ 1.13
UBE3B-201ENST00000340074 SIPA1L2Q9P2F8 1722 aaPredicted RBP22.1■■□□□ 1.13
UBE3B-201ENST00000340074 TMEM132EQ6IEE7 984 aa22.1■■□□□ 1.13
UBE3B-201ENST00000340074 NCOA3Q9Y6Q9 1424 aa22.1■■□□□ 1.13
UBE3B-201ENST00000340074 MSH6P52701 1360 aa22.08■■□□□ 1.12
UBE3B-201ENST00000340074 NALCNQ8IZF0 1738 aa22.08■■□□□ 1.12
UBE3B-201ENST00000340074 C14orf37Q86TY3 774 aa22.07■■□□□ 1.12
UBE3B-201ENST00000340074 PTCH1Q13635 1447 aa22.07■■□□□ 1.12
UBE3B-201ENST00000340074 PRAG1Q86YV5 1406 aa22.07■■□□□ 1.12
UBE3B-201ENST00000340074 ROBO2Q9HCK4 1378 aa22.07■■□□□ 1.12
UBE3B-201ENST00000340074 STK26Q9P289 416 aa22.06■■□□□ 1.12
UBE3B-201ENST00000340074 PIP4K2BP78356 416 aa22.06■■□□□ 1.12
UBE3B-201ENST00000340074 L3MBTL2Q969R5 705 aa22.06■■□□□ 1.12
UBE3B-201ENST00000340074 LRPPRCP42704 1394 aaKnown RBP22.05■■□□□ 1.12
UBE3B-201ENST00000340074 SCAF1Q9H7N4 1312 aaKnown RBP22.05■■□□□ 1.12
UBE3B-201ENST00000340074 YTHDC2Q9H6S0 1430 aaKnown RBP22.05■■□□□ 1.12
UBE3B-201ENST00000340074 KIAA1210Q9ULL0 1709 aa22.04■■□□□ 1.12
UBE3B-201ENST00000340074 ADGRB1O14514 1584 aa22.03■■□□□ 1.12
UBE3B-201ENST00000340074 TECPR2O15040 1411 aa22.03■■□□□ 1.12
UBE3B-201ENST00000340074 C19orf44Q9H6X5 657 aa22.02■■□□□ 1.12
UBE3B-201ENST00000340074 ABCC11Q96J66 1382 aa22.02■■□□□ 1.12
UBE3B-201ENST00000340074 ADGRL3Q9HAR2 1447 aa22■■□□□ 1.11
UBE3B-201ENST00000340074 ROBO1Q9Y6N7 1651 aa21.98■■□□□ 1.11
UBE3B-201ENST00000340074 ATF3P18847 181 aa21.97■■□□□ 1.11
UBE3B-201ENST00000340074 DCCP43146 1447 aa21.97■■□□□ 1.11
UBE3B-201ENST00000340074 WAPLQ7Z5K2 1190 aa21.97■■□□□ 1.11
UBE3B-201ENST00000340074 TONSLQ96HA7 1378 aa21.96■■□□□ 1.11
UBE3B-201ENST00000340074 TRPM1Q7Z4N2 1603 aa21.96■■□□□ 1.11
UBE3B-201ENST00000340074 CADPS2Q86UW7 1296 aa21.96■■□□□ 1.11
UBE3B-201ENST00000340074 PLEKHH1Q9ULM0 1364 aa21.95■■□□□ 1.1
UBE3B-201ENST00000340074 DLC1Q96QB1 1528 aa21.95■■□□□ 1.1
UBE3B-201ENST00000340074 SLAIN2Q9P270 581 aa21.95■■□□□ 1.1
UBE3B-201ENST00000340074 FAM135BQ49AJ0 1406 aa21.94■■□□□ 1.1
UBE3B-201ENST00000340074 ARHGEF28Q8N1W1 1705 aaKnown RBP21.94■■□□□ 1.1
UBE3B-201ENST00000340074 SIRT1Q96EB6 747 aa21.93■■□□□ 1.1
UBE3B-201ENST00000340074 TRAK1Q9UPV9 953 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms