RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 ANKRD50Q9ULJ7 1429 aa16.95■□□□□ 0.3
RTN4-202ENST00000337526 REC8O95072 547 aa16.95■□□□□ 0.3
RTN4-202ENST00000337526 NFKBIBQ15653 356 aa16.95■□□□□ 0.3
RTN4-202ENST00000337526 STAC3Q96MF2 364 aa16.95■□□□□ 0.3
RTN4-202ENST00000337526 TAF7LQ5H9L4 462 aa16.95■□□□□ 0.3
RTN4-202ENST00000337526 PANK1Q8TE04 598 aa16.94■□□□□ 0.3
RTN4-202ENST00000337526 MIA2Q96PC5 1412 aa16.94■□□□□ 0.3
RTN4-202ENST00000337526 API5Q9BZZ5 524 aaKnown RBP16.94■□□□□ 0.3
RTN4-202ENST00000337526 KIF3AQ9Y496 699 aa16.94■□□□□ 0.3
RTN4-202ENST00000337526 ATP6V1DQ9Y5K8 247 aa16.94■□□□□ 0.3
RTN4-202ENST00000337526 ISY1Q9ULR0 285 aaKnown RBP16.93■□□□□ 0.3
RTN4-202ENST00000337526 CUX1P39880 1505 aa16.93■□□□□ 0.3
RTN4-202ENST00000337526 NCOA2Q15596 1464 aa16.93■□□□□ 0.3
RTN4-202ENST00000337526 CCDC34Q96HJ3 373 aa16.93■□□□□ 0.3
RTN4-202ENST00000337526 LNPKQ9C0E8 428 aa16.93■□□□□ 0.3
RTN4-202ENST00000337526 CASKIN1Q8WXD9 1431 aa16.93■□□□□ 0.3
RTN4-202ENST00000337526 IFT140Q96RY7 1462 aa16.92■□□□□ 0.3
RTN4-202ENST00000337526 UNC13AQ9UPW8 1703 aa16.92■□□□□ 0.3
RTN4-202ENST00000337526 C22orf23Q9BZE7 217 aa16.91■□□□□ 0.3
RTN4-202ENST00000337526 SF3A1Q15459 793 aaKnown RBP16.91■□□□□ 0.3
RTN4-202ENST00000337526 LAMC3Q9Y6N6 1575 aa16.91■□□□□ 0.3
RTN4-202ENST00000337526 AAMPQ13685 434 aa16.91■□□□□ 0.3
RTN4-202ENST00000337526 GRIN2BQ13224 1484 aa16.89■□□□□ 0.29
RTN4-202ENST00000337526 NBPF8Q3BBV2 869 aa16.89■□□□□ 0.29
RTN4-202ENST00000337526 FYCO1Q9BQS8 1478 aa16.88■□□□□ 0.29
RTN4-202ENST00000337526 DIAPH3Q9NSV4 1193 aa16.88■□□□□ 0.29
RTN4-202ENST00000337526 TEFQ10587 303 aa16.88■□□□□ 0.29
RTN4-202ENST00000337526 AMER1Q5JTC6 1135 aaPredicted RBP16.87■□□□□ 0.29
RTN4-202ENST00000337526 H3BQV1 296 aa16.87■□□□□ 0.29
RTN4-202ENST00000337526 IFFO2Q5TF58 517 aa16.87■□□□□ 0.29
RTN4-202ENST00000337526 TCP11L2Q8N4U5 519 aa16.86■□□□□ 0.29
RTN4-202ENST00000337526 PNISRQ8TF01 805 aaKnown RBP16.86■□□□□ 0.29
RTN4-202ENST00000337526 MTHFSP49914 203 aa16.86■□□□□ 0.29
RTN4-202ENST00000337526 FAM184AQ8NB25 1140 aa16.86■□□□□ 0.29
RTN4-202ENST00000337526 GGNBP2Q9H3C7 697 aa16.86■□□□□ 0.29
RTN4-202ENST00000337526 GNAI1P63096 354 aa16.86■□□□□ 0.29
RTN4-202ENST00000337526 ANO2Q9NQ90 1003 aa16.86■□□□□ 0.29
RTN4-202ENST00000337526 TOPBP1Q92547 1522 aa16.85■□□□□ 0.29
RTN4-202ENST00000337526 EIF2S2P20042 333 aaKnown RBP16.85■□□□□ 0.29
RTN4-202ENST00000337526 PPP2R1AP30153 589 aa16.85■□□□□ 0.29
RTN4-202ENST00000337526 NBPF1Q3BBV0 1214 aa16.85■□□□□ 0.29
RTN4-202ENST00000337526 RUFY2Q8WXA3 655 aa16.85■□□□□ 0.29
RTN4-202ENST00000337526 TOMM22Q9NS69 142 aa16.85■□□□□ 0.29
RTN4-202ENST00000337526 ZKSCAN1P17029 563 aaPredicted RBP16.84■□□□□ 0.29
RTN4-202ENST00000337526 NUCB2P80303 420 aa16.84■□□□□ 0.29
RTN4-202ENST00000337526 CCDC184Q52MB2 194 aa16.84■□□□□ 0.29
RTN4-202ENST00000337526 ERICH3Q5RHP9 1530 aa16.84■□□□□ 0.29
RTN4-202ENST00000337526 BECN2A8MW95 431 aa16.84■□□□□ 0.29
RTN4-202ENST00000337526 GOLGA6L19H0YKK7 550 aa16.84■□□□□ 0.29
RTN4-202ENST00000337526 FKBP5Q13451 457 aaPredicted RBP16.84■□□□□ 0.29
RTN4-202ENST00000337526 C9orf78Q9NZ63 289 aaPredicted RBP16.84■□□□□ 0.29
RTN4-202ENST00000337526 AKNAQ7Z591 1439 aa16.83■□□□□ 0.29
RTN4-202ENST00000337526 HMOX1P09601 288 aa16.83■□□□□ 0.29
RTN4-202ENST00000337526 INTS3Q68E01 1043 aaKnown RBP16.83■□□□□ 0.29
RTN4-202ENST00000337526 NECTIN2Q92692 538 aa16.83■□□□□ 0.29
RTN4-202ENST00000337526 CCDC9Q9Y3X0 531 aaKnown RBP16.83■□□□□ 0.28
RTN4-202ENST00000337526 TMEM132EQ6IEE7 984 aa16.82■□□□□ 0.28
RTN4-202ENST00000337526 CFAP70Q5T0N1 1121 aa16.82■□□□□ 0.28
RTN4-202ENST00000337526 C1orf141Q5JVX7 400 aa16.81■□□□□ 0.28
RTN4-202ENST00000337526 RASSF8Q8NHQ8 419 aa16.81■□□□□ 0.28
RTN4-202ENST00000337526 ROCK1Q13464 1354 aa16.81■□□□□ 0.28
RTN4-202ENST00000337526 CREBRFQ8IUR6 639 aa16.81■□□□□ 0.28
RTN4-202ENST00000337526 BACH2Q9BYV9 841 aa16.8■□□□□ 0.28
RTN4-202ENST00000337526 NEXNQ0ZGT2 675 aa16.8■□□□□ 0.28
RTN4-202ENST00000337526 CHMP4CQ96CF2 233 aa16.8■□□□□ 0.28
RTN4-202ENST00000337526 PDE3AQ14432 1141 aa16.8■□□□□ 0.28
RTN4-202ENST00000337526 CABP2Q9NPB3 220 aa16.79■□□□□ 0.28
RTN4-202ENST00000337526 PRXQ9BXM0 1461 aa16.79■□□□□ 0.28
RTN4-202ENST00000337526 FRAT2O75474 233 aaPredicted RBP16.79■□□□□ 0.28
RTN4-202ENST00000337526 CLSTN1O94985 981 aa16.79■□□□□ 0.28
RTN4-202ENST00000337526 IFIT2P09913 472 aaKnown RBP16.78■□□□□ 0.28
RTN4-202ENST00000337526 MCTP1Q6DN14 999 aa16.78■□□□□ 0.28
RTN4-202ENST00000337526 FAM43AQ8N2R8 423 aa16.78■□□□□ 0.28
RTN4-202ENST00000337526 VSIG10Q8N0Z9 540 aa16.78■□□□□ 0.28
RTN4-202ENST00000337526 HFM1A2PYH4 1435 aa16.78■□□□□ 0.28
RTN4-202ENST00000337526 PDZRN3Q9UPQ7 1066 aa16.77■□□□□ 0.28
RTN4-202ENST00000337526 SYNJ1O43426 1573 aa16.77■□□□□ 0.28
RTN4-202ENST00000337526 MRE11P49959 708 aa16.77■□□□□ 0.28
RTN4-202ENST00000337526 POLA1P09884 1462 aaPredicted RBP16.77■□□□□ 0.28
RTN4-202ENST00000337526 BCAR3O75815 825 aa16.77■□□□□ 0.27
RTN4-202ENST00000337526 AFAP1Q8N556 730 aa16.77■□□□□ 0.27
RTN4-202ENST00000337526 CDC45O75419 566 aa16.76■□□□□ 0.27
RTN4-202ENST00000337526 TSPYL4Q9UJ04 414 aa16.76■□□□□ 0.27
RTN4-202ENST00000337526 TRAK2O60296 914 aa16.75■□□□□ 0.27
RTN4-202ENST00000337526 TNNT3P45378 269 aaPredicted RBP16.75■□□□□ 0.27
RTN4-202ENST00000337526 EXOSC9Q06265 439 aaKnown RBP16.75■□□□□ 0.27
RTN4-202ENST00000337526 VPS37CA5D8V6 355 aaPredicted RBP16.75■□□□□ 0.27
RTN4-202ENST00000337526 TPM3P06753 285 aa16.75■□□□□ 0.27
RTN4-202ENST00000337526 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.75■□□□□ 0.27
RTN4-202ENST00000337526 SMC3Q9UQE7 1217 aa16.75■□□□□ 0.27
RTN4-202ENST00000337526 CPLX2Q6PUV4 134 aaKnown RBP16.74■□□□□ 0.27
RTN4-202ENST00000337526 FAM13BQ9NYF5 915 aa16.74■□□□□ 0.27
RTN4-202ENST00000337526 FAM69CQ0P6D2 419 aa16.74■□□□□ 0.27
RTN4-202ENST00000337526 RNF20Q5VTR2 975 aa16.74■□□□□ 0.27
RTN4-202ENST00000337526 PEG3Q9GZU2 1588 aa16.73■□□□□ 0.27
RTN4-202ENST00000337526 GOLGA6L1Q8N7Z2 621 aa16.73■□□□□ 0.27
RTN4-202ENST00000337526 KIAA1107Q9UPP5 1409 aa16.73■□□□□ 0.27
RTN4-202ENST00000337526 BICD2Q8TD16 824 aa16.73■□□□□ 0.27
RTN4-202ENST00000337526 G3BP1Q13283 466 aaKnown RBP eCLIP16.73■□□□□ 0.273e-16■□□□□ 9.4
RTN4-202ENST00000337526 SMG6Q86US8 1419 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms