RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TMEM131LA2VDJ0 1609 aa24.17■■□□□ 1.46
PDLIM1-201ENST00000329399 EID1Q9Y6B2 187 aa24.16■■□□□ 1.46
PDLIM1-201ENST00000329399 KDM5AP29375 1690 aaKnown RBP24.15■■□□□ 1.46
PDLIM1-201ENST00000329399 ZFYVE9O95405 1425 aa24.14■■□□□ 1.45
PDLIM1-201ENST00000329399 SPHKAPQ2M3C7 1700 aa24.13■■□□□ 1.45
PDLIM1-201ENST00000329399 IQGAP1P46940 1657 aa24.12■■□□□ 1.45
PDLIM1-201ENST00000329399 RIMS2Q9UQ26 1411 aa24.12■■□□□ 1.45
PDLIM1-201ENST00000329399 SLC26A8Q96RN1 970 aa24.11■■□□□ 1.45
PDLIM1-201ENST00000329399 CLTCL1P53675 1640 aa24.1■■□□□ 1.45
PDLIM1-201ENST00000329399 TRPM2O94759 1503 aa24.09■■□□□ 1.45
PDLIM1-201ENST00000329399 FBXO41Q8TF61 875 aa24.07■■□□□ 1.44
PDLIM1-201ENST00000329399 STRCP1A6NGW2 1772 aa24.04■■□□□ 1.44
PDLIM1-201ENST00000329399 ZNF326Q5BKZ1 582 aaKnown RBP24.03■■□□□ 1.44
PDLIM1-201ENST00000329399 PPP1R15AO75807 674 aaPredicted RBP24.02■■□□□ 1.44
PDLIM1-201ENST00000329399 BCANQ96GW7 911 aa24.02■■□□□ 1.44
PDLIM1-201ENST00000329399 PLEKHG1Q9ULL1 1385 aa24.01■■□□□ 1.43
PDLIM1-201ENST00000329399 ABCF1Q8NE71 845 aaKnown RBP eCLIP24■■□□□ 1.43
PDLIM1-201ENST00000329399 DHX57Q6P158 1386 aaKnown RBP23.99■■□□□ 1.43
PDLIM1-201ENST00000329399 HDGFP51858 240 aaKnown RBP23.99■■□□□ 1.43
PDLIM1-201ENST00000329399 ADAMTS13Q76LX8 1427 aa23.96■■□□□ 1.43
PDLIM1-201ENST00000329399 RBM33Q96EV2 1170 aaKnown RBP23.95■■□□□ 1.42
PDLIM1-201ENST00000329399 RGL3Q3MIN7 710 aa23.94■■□□□ 1.42
PDLIM1-201ENST00000329399 TBX22Q9Y458 520 aa23.94■■□□□ 1.42
PDLIM1-201ENST00000329399 CCDC144AA2RUR9 1427 aa23.93■■□□□ 1.42
PDLIM1-201ENST00000329399 CPS1P31327 1500 aa23.93■■□□□ 1.42
PDLIM1-201ENST00000329399 NEXMIFQ5QGS0 1516 aa23.93■■□□□ 1.42
PDLIM1-201ENST00000329399 LRRC7Q96NW7 1537 aa23.93■■□□□ 1.42
PDLIM1-201ENST00000329399 KCNA6P17658 529 aa23.93■■□□□ 1.42
PDLIM1-201ENST00000329399 KIF1BO60333 1816 aa23.92■■□□□ 1.42
PDLIM1-201ENST00000329399 ANKRD30BQ9BXX2 1392 aa23.91■■□□□ 1.42
PDLIM1-201ENST00000329399 SPATA31E1Q6ZUB1 1445 aa23.91■■□□□ 1.42
PDLIM1-201ENST00000329399 IQSEC2Q5JU85 1478 aa23.89■■□□□ 1.41
PDLIM1-201ENST00000329399 UBAP1LF5GYI3 381 aa23.88■■□□□ 1.41
PDLIM1-201ENST00000329399 NRXN3Q9Y4C0 1643 aa23.87■■□□□ 1.41
PDLIM1-201ENST00000329399 PTPRUQ92729 1446 aa23.86■■□□□ 1.41
PDLIM1-201ENST00000329399 RPGRIP1LQ68CZ1 1315 aa23.85■■□□□ 1.41
PDLIM1-201ENST00000329399 ADGRF5Q8IZF2 1346 aa23.85■■□□□ 1.41
PDLIM1-201ENST00000329399 METP08581 1390 aa23.85■■□□□ 1.41
PDLIM1-201ENST00000329399 PROSER2Q86WR7 435 aaPredicted RBP23.84■■□□□ 1.41
PDLIM1-201ENST00000329399 VGFO15240 615 aaPredicted RBP23.83■■□□□ 1.41
PDLIM1-201ENST00000329399 TMEM94Q12767 1356 aa23.83■■□□□ 1.41
PDLIM1-201ENST00000329399 SETBP1Q9Y6X0 1596 aa23.82■■□□□ 1.4
PDLIM1-201ENST00000329399 ALKQ9UM73 1620 aa23.82■■□□□ 1.4
PDLIM1-201ENST00000329399 CHD2O14647 1828 aaKnown RBP23.82■■□□□ 1.4
PDLIM1-201ENST00000329399 AMOTL2Q9Y2J4 779 aa23.81■■□□□ 1.4
PDLIM1-201ENST00000329399 XIRP1Q702N8 1843 aaKnown RBP23.81■■□□□ 1.4
PDLIM1-201ENST00000329399 NWD1Q149M9 1564 aa23.79■■□□□ 1.4
PDLIM1-201ENST00000329399 PPLO60437 1756 aa23.79■■□□□ 1.4
PDLIM1-201ENST00000329399 PIP4K2BP78356 416 aa23.78■■□□□ 1.4
PDLIM1-201ENST00000329399 DIP2AQ14689 1571 aa23.76■■□□□ 1.39
PDLIM1-201ENST00000329399 TIMELESSQ9UNS1 1208 aa23.76■■□□□ 1.39
PDLIM1-201ENST00000329399 PIK3R4Q99570 1358 aa23.76■■□□□ 1.39
PDLIM1-201ENST00000329399 TOM1O60784 492 aa23.75■■□□□ 1.39
PDLIM1-201ENST00000329399 NKTRP30414 1462 aaKnown RBP23.74■■□□□ 1.39
PDLIM1-201ENST00000329399 SCAF1Q9H7N4 1312 aaKnown RBP23.72■■□□□ 1.39
PDLIM1-201ENST00000329399 IFT172Q9UG01 1749 aa23.7■■□□□ 1.39
PDLIM1-201ENST00000329399 SETD1AO15047 1707 aaKnown RBP23.7■■□□□ 1.38
PDLIM1-201ENST00000329399 TMEM132EQ6IEE7 984 aa23.68■■□□□ 1.38
PDLIM1-201ENST00000329399 KDM2AQ9Y2K7 1162 aa23.68■■□□□ 1.38
PDLIM1-201ENST00000329399 DCAF11Q8TEB1 546 aa23.67■■□□□ 1.38
PDLIM1-201ENST00000329399 SIN3AQ96ST3 1273 aa23.67■■□□□ 1.38
PDLIM1-201ENST00000329399 PIK3C2GO75747 1445 aa23.67■■□□□ 1.38
PDLIM1-201ENST00000329399 XRN1Q8IZH2 1706 aaKnown RBP23.67■■□□□ 1.38
PDLIM1-201ENST00000329399 CFAP70Q5T0N1 1121 aa23.66■■□□□ 1.38
PDLIM1-201ENST00000329399 HSPA1LP34931 641 aa23.65■■□□□ 1.38
PDLIM1-201ENST00000329399 ROBO2Q9HCK4 1378 aa23.65■■□□□ 1.38
PDLIM1-201ENST00000329399 NRXN1Q9ULB1 1477 aa23.64■■□□□ 1.38
PDLIM1-201ENST00000329399 C14orf93Q9H972 538 aaKnown RBP23.63■■□□□ 1.37
PDLIM1-201ENST00000329399 C14orf37Q86TY3 774 aa23.62■■□□□ 1.37
PDLIM1-201ENST00000329399 STK26Q9P289 416 aa23.62■■□□□ 1.37
PDLIM1-201ENST00000329399 ASXL1Q8IXJ9 1541 aa23.62■■□□□ 1.37
PDLIM1-201ENST00000329399 MSH6P52701 1360 aa23.61■■□□□ 1.37
PDLIM1-201ENST00000329399 C19orf44Q9H6X5 657 aa23.61■■□□□ 1.37
PDLIM1-201ENST00000329399 SLAIN2Q9P270 581 aa23.6■■□□□ 1.37
PDLIM1-201ENST00000329399 NCOA3Q9Y6Q9 1424 aa23.6■■□□□ 1.37
PDLIM1-201ENST00000329399 MYOM2P54296 1465 aa23.6■■□□□ 1.37
PDLIM1-201ENST00000329399 WAPLQ7Z5K2 1190 aa23.57■■□□□ 1.36
PDLIM1-201ENST00000329399 NEUROD1Q13562 356 aa23.56■■□□□ 1.36
PDLIM1-201ENST00000329399 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.56■■□□□ 1.36
PDLIM1-201ENST00000329399 LRPPRCP42704 1394 aaKnown RBP23.55■■□□□ 1.36
PDLIM1-201ENST00000329399 PTCH1Q13635 1447 aa23.54■■□□□ 1.36
PDLIM1-201ENST00000329399 FAM135BQ49AJ0 1406 aa23.54■■□□□ 1.36
PDLIM1-201ENST00000329399 PLEKHH1Q9ULM0 1364 aa23.53■■□□□ 1.36
PDLIM1-201ENST00000329399 ATF3P18847 181 aa23.53■■□□□ 1.36
PDLIM1-201ENST00000329399 PRAG1Q86YV5 1406 aa23.53■■□□□ 1.36
PDLIM1-201ENST00000329399 ABCC11Q96J66 1382 aa23.53■■□□□ 1.36
PDLIM1-201ENST00000329399 L3MBTL2Q969R5 705 aa23.52■■□□□ 1.36
PDLIM1-201ENST00000329399 YTHDC2Q9H6S0 1430 aaKnown RBP23.52■■□□□ 1.36
PDLIM1-201ENST00000329399 CADPS2Q86UW7 1296 aa23.51■■□□□ 1.35
PDLIM1-201ENST00000329399 ADGRL3Q9HAR2 1447 aa23.5■■□□□ 1.35
PDLIM1-201ENST00000329399 TECPR2O15040 1411 aa23.49■■□□□ 1.35
PDLIM1-201ENST00000329399 NALCNQ8IZF0 1738 aa23.47■■□□□ 1.35
PDLIM1-201ENST00000329399 ROBO1Q9Y6N7 1651 aa23.47■■□□□ 1.35
PDLIM1-201ENST00000329399 ADGRB1O14514 1584 aa23.47■■□□□ 1.35
PDLIM1-201ENST00000329399 STAC3Q96MF2 364 aa23.47■■□□□ 1.35
PDLIM1-201ENST00000329399 NBPF1Q3BBV0 1214 aa23.45■■□□□ 1.34
PDLIM1-201ENST00000329399 BRINP3Q76B58 766 aa23.45■■□□□ 1.34
PDLIM1-201ENST00000329399 MST1RQ04912 1400 aa23.45■■□□□ 1.34
PDLIM1-201ENST00000329399 SAFB2Q14151 953 aaKnown RBP eCLIP23.44■■□□□ 1.34
PDLIM1-201ENST00000329399 TRAK1Q9UPV9 953 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms