RNA–Protein interactions for RNA: ENST00000306853.1

CSPG4P2Y-201, Transcript of CSPG4 pseudogene 2 Y-linked, humanhuman

TSL 1 (best) BASIC

Gene CSPG4P2Y, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P2Y-201ENST00000306853 TXNDC2Q86VQ3 553 aa16.17■□□□□ 0.18
CSPG4P2Y-201ENST00000306853 PPP1R15AO75807 674 aaPredicted RBP16.16■□□□□ 0.18
CSPG4P2Y-201ENST00000306853 ZFYVE9O95405 1425 aa16.16■□□□□ 0.18
CSPG4P2Y-201ENST00000306853 PPLO60437 1756 aa16.15■□□□□ 0.18
CSPG4P2Y-201ENST00000306853 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.15■□□□□ 0.18
CSPG4P2Y-201ENST00000306853 NEXMIFQ5QGS0 1516 aa16.14■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 LTKP29376 864 aa16.13■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 IFT172Q9UG01 1749 aa16.13■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 BCANQ96GW7 911 aa16.12■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 DIP2AQ14689 1571 aa16.11■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 PLEKHG1Q9ULL1 1385 aa16.11■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 ANKRD30BQ9BXX2 1392 aa16.1■□□□□ 0.17
CSPG4P2Y-201ENST00000306853 NUTM2DQ5VT03 806 aaPredicted RBP16.08■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 PCGF6Q9BYE7 350 aa16.07■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 RPGRIP1LQ68CZ1 1315 aa16.07■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 SPATA31E1Q6ZUB1 1445 aa16.07■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 SETBP1Q9Y6X0 1596 aa16.07■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 NRXN3Q9Y4C0 1643 aa16.06■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 CPS1P31327 1500 aa16.06■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 ZNF335Q9H4Z2 1342 aaPredicted RBP16.06■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 STRCP1A6NGW2 1772 aa16.05■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 LTBP4Q8N2S1 1624 aa16.05■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 RGL3Q3MIN7 710 aa16.05■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 CHD2O14647 1828 aaKnown RBP16.05■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 SENP3Q9H4L4 574 aaPredicted RBP16.04■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 DHX57Q6P158 1386 aaKnown RBP16.03■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 VGFO15240 615 aaPredicted RBP16.03■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 NWD1Q149M9 1564 aa16.02■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 SLC26A8Q96RN1 970 aa16.02■□□□□ 0.16
CSPG4P2Y-201ENST00000306853 SETD1AO15047 1707 aaKnown RBP16.01■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 ADAMTS13Q76LX8 1427 aa16.01■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 LAMC1P11047 1609 aa16.01■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 MYOM2P54296 1465 aa16■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 IQSEC2Q5JU85 1478 aa15.99■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 NKTRP30414 1462 aaKnown RBP15.98■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 ALKQ9UM73 1620 aa15.98■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 CERKQ8TCT0 537 aa15.98■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 TBX22Q9Y458 520 aa15.98■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 PIK3R4Q99570 1358 aa15.98■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 XIRP1Q702N8 1843 aaKnown RBP15.96■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 XRN1Q8IZH2 1706 aaKnown RBP15.96■□□□□ 0.15
CSPG4P2Y-201ENST00000306853 KCNA6P17658 529 aa15.95■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 PIK3C2GO75747 1445 aa15.94■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 LRRC7Q96NW7 1537 aa15.94■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 ADGRF5Q8IZF2 1346 aa15.94■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 NRXN1Q9ULB1 1477 aa15.93■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 KNDC1Q76NI1 1749 aa15.92■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 DCAF11Q8TEB1 546 aa15.92■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 NEUROD1Q13562 356 aa15.91■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 STAC3Q96MF2 364 aa15.91■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 KDM2AQ9Y2K7 1162 aa15.91■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 METP08581 1390 aa15.9■□□□□ 0.14
CSPG4P2Y-201ENST00000306853 KIAA1210Q9ULL0 1709 aa15.89■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 PTPRUQ92729 1446 aa15.89■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 PROSER2Q86WR7 435 aaPredicted RBP15.89■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 SIN3AQ96ST3 1273 aa15.89■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 AMOTL2Q9Y2J4 779 aa15.88■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 ASXL1Q8IXJ9 1541 aa15.87■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 TMEM94Q12767 1356 aa15.87■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 TONSLQ96HA7 1378 aa15.87■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 PTCH1Q13635 1447 aa15.85■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 C14orf37Q86TY3 774 aa15.84■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 FBXO41Q8TF61 875 aa15.84■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 NALCNQ8IZF0 1738 aa15.84■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 MSH6P52701 1360 aa15.84■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 PRAG1Q86YV5 1406 aa15.84■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 NCOA3Q9Y6Q9 1424 aa15.84■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.83■□□□□ 0.13
CSPG4P2Y-201ENST00000306853 UBAP1LF5GYI3 381 aa15.83■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 CFAP70Q5T0N1 1121 aa15.83■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 C14orf93Q9H972 538 aaKnown RBP15.83■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 CLSPNQ9HAW4 1339 aa15.83■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 TOM1O60784 492 aa15.82■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 CCER1Q8TC90 406 aaPredicted RBP15.82■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 L3MBTL2Q969R5 705 aa15.82■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 LRPPRCP42704 1394 aaKnown RBP15.82■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 YTHDC2Q9H6S0 1430 aaKnown RBP15.82■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 TRPM1Q7Z4N2 1603 aa15.82■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 ADGRB1O14514 1584 aa15.81■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 RBM33Q96EV2 1170 aaKnown RBP15.81■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 TECPR2O15040 1411 aa15.8■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 TMEM132EQ6IEE7 984 aa15.8■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 STK26Q9P289 416 aa15.8■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 ARHGEF28Q8N1W1 1705 aaKnown RBP15.8■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 ROBO2Q9HCK4 1378 aa15.78■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 SCAF1Q9H7N4 1312 aaKnown RBP15.78■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 DLC1Q96QB1 1528 aa15.78■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 ADGRL3Q9HAR2 1447 aa15.77■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 ABCC11Q96J66 1382 aa15.77■□□□□ 0.12
CSPG4P2Y-201ENST00000306853 DCCP43146 1447 aa15.77■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 ATF3P18847 181 aa15.75■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 PIP4K2BP78356 416 aa15.75■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 C19orf44Q9H6X5 657 aa15.75■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 FAM135BQ49AJ0 1406 aa15.75■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 CDC42BPGQ6DT37 1551 aa15.75■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 ROBO1Q9Y6N7 1651 aa15.74■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 CADPS2Q86UW7 1296 aa15.74■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 ILDR1Q86SU0 546 aaPredicted RBP15.73■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 ROCK2O75116 1388 aaKnown RBP15.73■□□□□ 0.11
CSPG4P2Y-201ENST00000306853 TRAK1Q9UPV9 953 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms