RNA–Protein interactions for RNA: ENST00000268717.9

COPS3-201, Transcript of COP9 signalosome subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPS3, Length 1,641 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-201ENST00000268717 SLC52A1Q9NWF4 448 aa21.67■■□□□ 1.06
COPS3-201ENST00000268717 MED14O60244 1454 aa21.67■■□□□ 1.06
COPS3-201ENST00000268717 SLIT1O75093 1534 aa21.67■■□□□ 1.06
COPS3-201ENST00000268717 ARHGAP23Q9P227 1491 aa21.66■■□□□ 1.06
COPS3-201ENST00000268717 LTBP4Q8N2S1 1624 aa21.66■■□□□ 1.06
COPS3-201ENST00000268717 ADGRB3O60242 1522 aa21.65■■□□□ 1.06
COPS3-201ENST00000268717 CERKQ8TCT0 537 aa21.65■■□□□ 1.06
COPS3-201ENST00000268717 IQGAP1P46940 1657 aa21.64■■□□□ 1.06
COPS3-201ENST00000268717 PRAG1Q86YV5 1406 aa21.64■■□□□ 1.06
COPS3-201ENST00000268717 CLTCL1P53675 1640 aa21.64■■□□□ 1.05
COPS3-201ENST00000268717 NPHP4O75161 1426 aaPredicted RBP21.64■■□□□ 1.05
COPS3-201ENST00000268717 HSPA5P11021 654 aaKnown RBP21.63■■□□□ 1.05
COPS3-201ENST00000268717 ILDR1Q86SU0 546 aaPredicted RBP21.63■■□□□ 1.05
COPS3-201ENST00000268717 DCAF11Q8TEB1 546 aa21.63■■□□□ 1.05
COPS3-201ENST00000268717 STAG3Q9UJ98 1225 aa21.63■■□□□ 1.05
COPS3-201ENST00000268717 MYO5BQ9ULV0 1848 aa21.63■■□□□ 1.05
COPS3-201ENST00000268717 TMEM2Q9UHN6 1383 aa21.62■■□□□ 1.05
COPS3-201ENST00000268717 SCAF11Q99590 1463 aaKnown RBP21.62■■□□□ 1.05
COPS3-201ENST00000268717 ZNF335Q9H4Z2 1342 aaPredicted RBP21.6■■□□□ 1.05
COPS3-201ENST00000268717 LTKP29376 864 aa21.59■■□□□ 1.05
COPS3-201ENST00000268717 FBXO41Q8TF61 875 aa21.59■■□□□ 1.05
COPS3-201ENST00000268717 HIRIP3Q9BW71 556 aaPredicted RBP21.59■■□□□ 1.05
COPS3-201ENST00000268717 TMEM131LA2VDJ0 1609 aa21.58■■□□□ 1.05
COPS3-201ENST00000268717 TXNDC2Q86VQ3 553 aa21.58■■□□□ 1.04
COPS3-201ENST00000268717 GPRASP1Q5JY77 1395 aa21.57■■□□□ 1.04
COPS3-201ENST00000268717 EID1Q9Y6B2 187 aa21.57■■□□□ 1.04
COPS3-201ENST00000268717 RGL3Q3MIN7 710 aa21.55■■□□□ 1.04
COPS3-201ENST00000268717 LAMC1P11047 1609 aa21.55■■□□□ 1.04
COPS3-201ENST00000268717 TRPM1Q7Z4N2 1603 aa21.55■■□□□ 1.04
COPS3-201ENST00000268717 ZNF326Q5BKZ1 582 aaKnown RBP21.55■■□□□ 1.04
COPS3-201ENST00000268717 KDM2AQ9Y2K7 1162 aa21.55■■□□□ 1.04
COPS3-201ENST00000268717 USP47Q96K76 1375 aa21.54■■□□□ 1.04
COPS3-201ENST00000268717 MIER1Q8N108 512 aa21.53■■□□□ 1.04
COPS3-201ENST00000268717 IQSEC2Q5JU85 1478 aa21.53■■□□□ 1.04
COPS3-201ENST00000268717 ROCK2O75116 1388 aaKnown RBP21.51■■□□□ 1.03
COPS3-201ENST00000268717 MYOM2P54296 1465 aa21.51■■□□□ 1.03
COPS3-201ENST00000268717 ZFYVE9O95405 1425 aa21.51■■□□□ 1.03
COPS3-201ENST00000268717 CARD11Q9BXL7 1154 aa21.51■■□□□ 1.03
COPS3-201ENST00000268717 CPS1P31327 1500 aa21.5■■□□□ 1.03
COPS3-201ENST00000268717 CHGAP10645 457 aaKnown RBP21.49■■□□□ 1.03
COPS3-201ENST00000268717 STRCP1A6NGW2 1772 aa21.49■■□□□ 1.03
COPS3-201ENST00000268717 WASHC2AQ641Q2 1341 aa21.49■■□□□ 1.03
COPS3-201ENST00000268717 DDX10Q13206 875 aaKnown RBP21.48■■□□□ 1.03
COPS3-201ENST00000268717 KIF1BO60333 1816 aa21.48■■□□□ 1.03
COPS3-201ENST00000268717 RIMS2Q9UQ26 1411 aa21.48■■□□□ 1.03
COPS3-201ENST00000268717 CCDC7Q96M83 1385 aa21.46■■□□□ 1.03
COPS3-201ENST00000268717 HDGFP51858 240 aaKnown RBP21.44■■□□□ 1.02
COPS3-201ENST00000268717 NRXN1Q9ULB1 1477 aa21.44■■□□□ 1.02
COPS3-201ENST00000268717 RPGRIP1LQ68CZ1 1315 aa21.43■■□□□ 1.02
COPS3-201ENST00000268717 KIAA1210Q9ULL0 1709 aa21.43■■□□□ 1.02
COPS3-201ENST00000268717 PLEKHG1Q9ULL1 1385 aa21.43■■□□□ 1.02
COPS3-201ENST00000268717 IFT172Q9UG01 1749 aa21.42■■□□□ 1.02
COPS3-201ENST00000268717 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.42■■□□□ 1.02
COPS3-201ENST00000268717 KIF7Q2M1P5 1343 aa21.39■■□□□ 1.01
COPS3-201ENST00000268717 SLC26A8Q96RN1 970 aa21.39■■□□□ 1.01
COPS3-201ENST00000268717 LRRC7Q96NW7 1537 aa21.38■■□□□ 1.01
COPS3-201ENST00000268717 C11orf95C9JLR9 678 aaPredicted RBP21.37■■□□□ 1.01
COPS3-201ENST00000268717 NBPF1Q3BBV0 1214 aa21.37■■□□□ 1.01
COPS3-201ENST00000268717 NUTM2DQ5VT03 806 aaPredicted RBP21.37■■□□□ 1.01
COPS3-201ENST00000268717 BCANQ96GW7 911 aa21.37■■□□□ 1.01
COPS3-201ENST00000268717 SENP3Q9H4L4 574 aaPredicted RBP21.35■■□□□ 1.01
COPS3-201ENST00000268717 NEXMIFQ5QGS0 1516 aa21.35■■□□□ 1.01
COPS3-201ENST00000268717 ST20-MTHFSA0A0A6YYL1 179 aa21.34■■□□□ 1.01
COPS3-201ENST00000268717 CHD2O14647 1828 aaKnown RBP21.34■■□□□ 1.01
COPS3-201ENST00000268717 DIP2AQ14689 1571 aa21.34■■□□□ 1.01
COPS3-201ENST00000268717 NWD1Q149M9 1564 aa21.34■■□□□ 1.01
COPS3-201ENST00000268717 ADAMTS13Q76LX8 1427 aa21.33■■□□□ 1.01
COPS3-201ENST00000268717 XIRP1Q702N8 1843 aaKnown RBP21.33■■□□□ 1.01
COPS3-201ENST00000268717 PPLO60437 1756 aa21.33■■□□□ 1
COPS3-201ENST00000268717 ANP32CO43423 234 aa21.33■■□□□ 1
COPS3-201ENST00000268717 KCNA6P17658 529 aa21.33■■□□□ 1
COPS3-201ENST00000268717 UBAP1LF5GYI3 381 aa21.32■■□□□ 1
COPS3-201ENST00000268717 PIK3C2GO75747 1445 aa21.31■■□□□ 1
COPS3-201ENST00000268717 NRXN3Q9Y4C0 1643 aa21.31■■□□□ 1
COPS3-201ENST00000268717 TBX22Q9Y458 520 aa21.31■■□□□ 1
COPS3-201ENST00000268717 SETBP1Q9Y6X0 1596 aa21.3■■□□□ 1
COPS3-201ENST00000268717 ADGRF5Q8IZF2 1346 aa21.3■■□□□ 1
COPS3-201ENST00000268717 NKTRP30414 1462 aaKnown RBP21.29■■□□□ 1
COPS3-201ENST00000268717 CCER2I3L3R5 266 aa21.29■■□□□ 1
COPS3-201ENST00000268717 EIF3AQ14152 1382 aaKnown RBP21.28■■□□□ 1
COPS3-201ENST00000268717 VGFO15240 615 aaPredicted RBP21.26■□□□□ 0.99
COPS3-201ENST00000268717 TESK2Q96S53 571 aa21.26■□□□□ 0.99
COPS3-201ENST00000268717 PIK3R4Q99570 1358 aa21.26■□□□□ 0.99
COPS3-201ENST00000268717 ALKQ9UM73 1620 aa21.26■□□□□ 0.99
COPS3-201ENST00000268717 SLC24A1O60721 1099 aa21.25■□□□□ 0.99
COPS3-201ENST00000268717 TOM1O60784 492 aa21.25■□□□□ 0.99
COPS3-201ENST00000268717 TMEM94Q12767 1356 aa21.24■□□□□ 0.99
COPS3-201ENST00000268717 C14orf93Q9H972 538 aaKnown RBP21.23■□□□□ 0.99
COPS3-201ENST00000268717 PROSER2Q86WR7 435 aaPredicted RBP21.22■□□□□ 0.99
COPS3-201ENST00000268717 CFAP70Q5T0N1 1121 aa21.22■□□□□ 0.99
COPS3-201ENST00000268717 ADGRB1O14514 1584 aa21.2■□□□□ 0.98
COPS3-201ENST00000268717 TMF1P82094 1093 aa21.2■□□□□ 0.98
COPS3-201ENST00000268717 PTPRUQ92729 1446 aa21.19■□□□□ 0.98
COPS3-201ENST00000268717 CENPBP07199 599 aaPredicted RBP21.19■□□□□ 0.98
COPS3-201ENST00000268717 SETD1AO15047 1707 aaKnown RBP21.19■□□□□ 0.98
COPS3-201ENST00000268717 SBNO2Q9Y2G9 1366 aa21.19■□□□□ 0.98
COPS3-201ENST00000268717 XRN1Q8IZH2 1706 aaKnown RBP21.19■□□□□ 0.98
COPS3-201ENST00000268717 PIP4K2BP78356 416 aa21.18■□□□□ 0.98
COPS3-201ENST00000268717 RBM33Q96EV2 1170 aaKnown RBP21.18■□□□□ 0.98
COPS3-201ENST00000268717 METP08581 1390 aa21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms