RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 RIMS2Q9UQ26 1411 aa24.24■■□□□ 1.47
USE1-201ENST00000263897 KCNA6P17658 529 aa24.22■■□□□ 1.47
USE1-201ENST00000263897 ABCF1Q8NE71 845 aaKnown RBP eCLIP24.22■■□□□ 1.47
USE1-201ENST00000263897 PPP1R15AO75807 674 aaPredicted RBP24.21■■□□□ 1.47
USE1-201ENST00000263897 PIP4K2BP78356 416 aa24.21■■□□□ 1.47
USE1-201ENST00000263897 TRIM52Q96A61 297 aa24.2■■□□□ 1.46
USE1-201ENST00000263897 PLEKHG1Q9ULL1 1385 aa24.19■■□□□ 1.46
USE1-201ENST00000263897 SCAF1Q9H7N4 1312 aaKnown RBP24.19■■□□□ 1.46
USE1-201ENST00000263897 SENP3Q9H4L4 574 aaPredicted RBP24.18■■□□□ 1.46
USE1-201ENST00000263897 NUTM2DQ5VT03 806 aaPredicted RBP24.16■■□□□ 1.46
USE1-201ENST00000263897 SPHKAPQ2M3C7 1700 aa24.15■■□□□ 1.46
USE1-201ENST00000263897 TBX22Q9Y458 520 aa24.15■■□□□ 1.46
USE1-201ENST00000263897 PROSER2Q86WR7 435 aaPredicted RBP24.14■■□□□ 1.45
USE1-201ENST00000263897 ALKQ9UM73 1620 aa24.13■■□□□ 1.45
USE1-201ENST00000263897 HSPA1LP34931 641 aa24.12■■□□□ 1.45
USE1-201ENST00000263897 SLC4A1APQ9BWU0 796 aaKnown RBP24.12■■□□□ 1.45
USE1-201ENST00000263897 XIRP1Q702N8 1843 aaKnown RBP24.12■■□□□ 1.45
USE1-201ENST00000263897 TMEM94Q12767 1356 aa24.1■■□□□ 1.45
USE1-201ENST00000263897 ZNF326Q5BKZ1 582 aaKnown RBP24.09■■□□□ 1.45
USE1-201ENST00000263897 ADAMTS13Q76LX8 1427 aa24.08■■□□□ 1.44
USE1-201ENST00000263897 RBM33Q96EV2 1170 aaKnown RBP24.07■■□□□ 1.44
USE1-201ENST00000263897 CHD2O14647 1828 aaKnown RBP24.07■■□□□ 1.44
USE1-201ENST00000263897 TRPM2O94759 1503 aa24.06■■□□□ 1.44
USE1-201ENST00000263897 NWD1Q149M9 1564 aa24.06■■□□□ 1.44
USE1-201ENST00000263897 CLTCL1P53675 1640 aa24.05■■□□□ 1.44
USE1-201ENST00000263897 NKTRP30414 1462 aaKnown RBP24.05■■□□□ 1.44
USE1-201ENST00000263897 DISP3Q9P2K9 1392 aa24.04■■□□□ 1.44
USE1-201ENST00000263897 PIK3R4Q99570 1358 aa24.03■■□□□ 1.44
USE1-201ENST00000263897 KIF1BO60333 1816 aa24■■□□□ 1.43
USE1-201ENST00000263897 DIP2AQ14689 1571 aa24■■□□□ 1.43
USE1-201ENST00000263897 FOXD1Q16676 465 aa23.99■■□□□ 1.43
USE1-201ENST00000263897 MPHOSPH9Q99550 1183 aa23.99■■□□□ 1.43
USE1-201ENST00000263897 ACIN1Q9UKV3 1341 aaKnown RBP23.98■■□□□ 1.43
USE1-201ENST00000263897 AMOTL2Q9Y2J4 779 aa23.97■■□□□ 1.43
USE1-201ENST00000263897 SETD5Q9C0A6 1442 aa23.96■■□□□ 1.43
USE1-201ENST00000263897 MSH6P52701 1360 aa23.96■■□□□ 1.43
USE1-201ENST00000263897 NEXMIFQ5QGS0 1516 aa23.95■■□□□ 1.43
USE1-201ENST00000263897 FAM135BQ49AJ0 1406 aa23.95■■□□□ 1.42
USE1-201ENST00000263897 SETBP1Q9Y6X0 1596 aa23.95■■□□□ 1.42
USE1-201ENST00000263897 NCOA3Q9Y6Q9 1424 aa23.94■■□□□ 1.42
USE1-201ENST00000263897 RPGRIP1LQ68CZ1 1315 aa23.94■■□□□ 1.42
USE1-201ENST00000263897 VGFO15240 615 aaPredicted RBP23.94■■□□□ 1.42
USE1-201ENST00000263897 PTPRUQ92729 1446 aa23.93■■□□□ 1.42
USE1-201ENST00000263897 NRXN3Q9Y4C0 1643 aa23.93■■□□□ 1.42
USE1-201ENST00000263897 SLAIN2Q9P270 581 aa23.92■■□□□ 1.42
USE1-201ENST00000263897 C14orf37Q86TY3 774 aa23.9■■□□□ 1.42
USE1-201ENST00000263897 C19orf44Q9H6X5 657 aa23.9■■□□□ 1.42
USE1-201ENST00000263897 METP08581 1390 aa23.9■■□□□ 1.42
USE1-201ENST00000263897 ILDR2Q71H61 639 aa23.88■■□□□ 1.41
USE1-201ENST00000263897 CCDC144AA2RUR9 1427 aa23.87■■□□□ 1.41
USE1-201ENST00000263897 RAB3GAP2Q9H2M9 1393 aa23.85■■□□□ 1.41
USE1-201ENST00000263897 CADPS2Q86UW7 1296 aa23.84■■□□□ 1.41
USE1-201ENST00000263897 ROBO1Q9Y6N7 1651 aa23.83■■□□□ 1.41
USE1-201ENST00000263897 ATF3P18847 181 aa23.83■■□□□ 1.41
USE1-201ENST00000263897 RGL3Q3MIN7 710 aa23.83■■□□□ 1.41
USE1-201ENST00000263897 XRN1Q8IZH2 1706 aaKnown RBP23.83■■□□□ 1.41
USE1-201ENST00000263897 PPLO60437 1756 aa23.82■■□□□ 1.4
USE1-201ENST00000263897 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.81■■□□□ 1.4
USE1-201ENST00000263897 SPATA31E1Q6ZUB1 1445 aa23.81■■□□□ 1.4
USE1-201ENST00000263897 MED1Q15648 1581 aaPredicted RBP23.8■■□□□ 1.4
USE1-201ENST00000263897 HRCP23327 699 aa23.78■■□□□ 1.4
USE1-201ENST00000263897 ADGRF5Q8IZF2 1346 aa23.77■■□□□ 1.4
USE1-201ENST00000263897 ANKRD30BQ9BXX2 1392 aa23.76■■□□□ 1.39
USE1-201ENST00000263897 SETD1AO15047 1707 aaKnown RBP23.75■■□□□ 1.39
USE1-201ENST00000263897 DCCP43146 1447 aa23.74■■□□□ 1.39
USE1-201ENST00000263897 PHF23Q9BUL5 403 aaPredicted RBP23.7■■□□□ 1.38
USE1-201ENST00000263897 PHLPP1O60346 1717 aa23.7■■□□□ 1.38
USE1-201ENST00000263897 ADGRL3Q9HAR2 1447 aa23.69■■□□□ 1.38
USE1-201ENST00000263897 ROBO2Q9HCK4 1378 aa23.69■■□□□ 1.38
USE1-201ENST00000263897 BRINP3Q76B58 766 aa23.69■■□□□ 1.38
USE1-201ENST00000263897 PTCH1Q13635 1447 aa23.68■■□□□ 1.38
USE1-201ENST00000263897 IFT172Q9UG01 1749 aa23.68■■□□□ 1.38
USE1-201ENST00000263897 PRAG1Q86YV5 1406 aa23.67■■□□□ 1.38
USE1-201ENST00000263897 SOCS7O14512 581 aa23.67■■□□□ 1.38
USE1-201ENST00000263897 MST1RQ04912 1400 aa23.67■■□□□ 1.38
USE1-201ENST00000263897 JCADQ9P266 1359 aa23.65■■□□□ 1.38
USE1-201ENST00000263897 PIK3C2GO75747 1445 aa23.63■■□□□ 1.37
USE1-201ENST00000263897 TMEM132EQ6IEE7 984 aa23.63■■□□□ 1.37
USE1-201ENST00000263897 NALCNQ8IZF0 1738 aa23.63■■□□□ 1.37
USE1-201ENST00000263897 C14orf93Q9H972 538 aaKnown RBP23.62■■□□□ 1.37
USE1-201ENST00000263897 STK26Q9P289 416 aa23.62■■□□□ 1.37
USE1-201ENST00000263897 COL16A1Q07092 1604 aaPredicted RBP23.62■■□□□ 1.37
USE1-201ENST00000263897 AHDC1Q5TGY3 1603 aaPredicted RBP23.62■■□□□ 1.37
USE1-201ENST00000263897 RGS17Q9UGC6 210 aaPredicted RBP23.6■■□□□ 1.37
USE1-201ENST00000263897 LRPPRCP42704 1394 aaKnown RBP23.6■■□□□ 1.37
USE1-201ENST00000263897 ABCC11Q96J66 1382 aa23.6■■□□□ 1.37
USE1-201ENST00000263897 ASXL1Q8IXJ9 1541 aa23.58■■□□□ 1.36
USE1-201ENST00000263897 NRXN1Q9ULB1 1477 aa23.57■■□□□ 1.36
USE1-201ENST00000263897 CFAP70Q5T0N1 1121 aa23.57■■□□□ 1.36
USE1-201ENST00000263897 WAPLQ7Z5K2 1190 aa23.57■■□□□ 1.36
USE1-201ENST00000263897 TECPR2O15040 1411 aa23.57■■□□□ 1.36
USE1-201ENST00000263897 MYOM2P54296 1465 aa23.56■■□□□ 1.36
USE1-201ENST00000263897 C1orf167Q5SNV9 1468 aa23.56■■□□□ 1.36
USE1-201ENST00000263897 SPATA31A6Q5VVP1 1343 aa23.55■■□□□ 1.36
USE1-201ENST00000263897 YTHDC2Q9H6S0 1430 aaKnown RBP23.54■■□□□ 1.36
USE1-201ENST00000263897 SIRT1Q96EB6 747 aa23.54■■□□□ 1.36
USE1-201ENST00000263897 ORAI2Q96SN7 254 aa23.54■■□□□ 1.36
USE1-201ENST00000263897 DCAF11Q8TEB1 546 aa23.53■■□□□ 1.36
USE1-201ENST00000263897 DDX17Q92841 729 aaKnown RBP23.53■■□□□ 1.36
USE1-201ENST00000263897 LRRC59Q96AG4 307 aaKnown RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms