RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 KDM2BQ8NHM5 1336 aa16.07■□□□□ 0.16
CHMP3-201ENST00000263856 C8orf34Q49A92 452 aa16.07■□□□□ 0.16
CHMP3-201ENST00000263856 COG6Q9Y2V7 657 aa16.07■□□□□ 0.16
CHMP3-201ENST00000263856 FRAT2O75474 233 aaPredicted RBP16.07■□□□□ 0.16
CHMP3-201ENST00000263856 AFAP1Q8N556 730 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 BCL2L13Q9BXK5 485 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 ARHGEF5Q12774 1597 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 PANK1Q8TE04 598 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 DMRT2Q9Y5R5 561 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 MYO5CQ9NQX4 1742 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 PRDM15P57071 1507 aaPredicted RBP16.06■□□□□ 0.16
CHMP3-201ENST00000263856 SLFN5Q08AF3 891 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 CDCA8Q53HL2 280 aa16.06■□□□□ 0.16
CHMP3-201ENST00000263856 SLKQ9H2G2 1235 aaPredicted RBP16.05■□□□□ 0.16
CHMP3-201ENST00000263856 CFAP70Q5T0N1 1121 aa16.04■□□□□ 0.16
CHMP3-201ENST00000263856 TTC37Q6PGP7 1564 aa16.03■□□□□ 0.16
CHMP3-201ENST00000263856 CLUAP1Q96AJ1 413 aa16.03■□□□□ 0.16
CHMP3-201ENST00000263856 IGHDP01880 384 aa16.02■□□□□ 0.16
CHMP3-201ENST00000263856 PREX2Q70Z35 1606 aa16.02■□□□□ 0.15
CHMP3-201ENST00000263856 EFCAB2Q5VUJ9 269 aa16.01■□□□□ 0.15
CHMP3-201ENST00000263856 SPAG9O60271 1321 aaKnown RBP16.01■□□□□ 0.15
CHMP3-201ENST00000263856 SPRYD3Q8NCJ5 442 aa16.01■□□□□ 0.15
CHMP3-201ENST00000263856 WDR7Q9Y4E6 1490 aa16.01■□□□□ 0.15
CHMP3-201ENST00000263856 KIF3BO15066 747 aa16■□□□□ 0.15
CHMP3-201ENST00000263856 EIF5BO60841 1220 aaKnown RBP15.99■□□□□ 0.15
CHMP3-201ENST00000263856 CENPJQ9HC77 1338 aaPredicted RBP15.99■□□□□ 0.15
CHMP3-201ENST00000263856 EIF2AK4Q9P2K8 1649 aaKnown RBP15.99■□□□□ 0.15
CHMP3-201ENST00000263856 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.98■□□□□ 0.15
CHMP3-201ENST00000263856 E9PSI1 815 aa15.97■□□□□ 0.15
CHMP3-201ENST00000263856 SEC24BO95487 1268 aa15.97■□□□□ 0.15
CHMP3-201ENST00000263856 TNNQ9UQP3 1299 aa15.97■□□□□ 0.15
CHMP3-201ENST00000263856 ZNF521Q96K83 1311 aa15.97■□□□□ 0.15
CHMP3-201ENST00000263856 TRAK1Q9UPV9 953 aa15.97■□□□□ 0.15
CHMP3-201ENST00000263856 TRAPPC8Q9Y2L5 1435 aa15.96■□□□□ 0.14
CHMP3-201ENST00000263856 MORC1Q86VD1 984 aa15.95■□□□□ 0.14
CHMP3-201ENST00000263856 ASXL1Q8IXJ9 1541 aa15.95■□□□□ 0.14
CHMP3-201ENST00000263856 NUTM2DQ5VT03 806 aaPredicted RBP15.95■□□□□ 0.14
CHMP3-201ENST00000263856 NKTRP30414 1462 aaKnown RBP15.95■□□□□ 0.14
CHMP3-201ENST00000263856 UNC13BO14795 1591 aa15.95■□□□□ 0.14
CHMP3-201ENST00000263856 CARD14Q9BXL6 1004 aa15.94■□□□□ 0.14
CHMP3-201ENST00000263856 MAST1Q9Y2H9 1570 aa15.94■□□□□ 0.14
CHMP3-201ENST00000263856 SCAF11Q99590 1463 aaKnown RBP15.94■□□□□ 0.14
CHMP3-201ENST00000263856 ADGRF5Q8IZF2 1346 aa15.94■□□□□ 0.14
CHMP3-201ENST00000263856 DUOX2Q9NRD8 1548 aa15.93■□□□□ 0.14
CHMP3-201ENST00000263856 EIF3AQ14152 1382 aaKnown RBP15.93■□□□□ 0.14
CHMP3-201ENST00000263856 IQGAP3Q86VI3 1631 aa15.93■□□□□ 0.14
CHMP3-201ENST00000263856 SAFB2Q14151 953 aaKnown RBP eCLIP15.93■□□□□ 0.14
CHMP3-201ENST00000263856 WWC1Q8IX03 1113 aa15.92■□□□□ 0.14
CHMP3-201ENST00000263856 SLC12A5Q9H2X9 1139 aa15.91■□□□□ 0.14
CHMP3-201ENST00000263856 TMEM132EQ6IEE7 984 aa15.9■□□□□ 0.14
CHMP3-201ENST00000263856 CGNL1Q0VF96 1302 aa15.9■□□□□ 0.14
CHMP3-201ENST00000263856 ERCC6L2Q5T890 1561 aa15.9■□□□□ 0.14
CHMP3-201ENST00000263856 UPF2Q9HAU5 1272 aaKnown RBP15.89■□□□□ 0.13
CHMP3-201ENST00000263856 POGKQ9P215 609 aa15.89■□□□□ 0.13
CHMP3-201ENST00000263856 INSRP06213 1382 aa15.89■□□□□ 0.13
CHMP3-201ENST00000263856 BECN1Q14457 450 aa15.89■□□□□ 0.13
CHMP3-201ENST00000263856 TCP11L2Q8N4U5 519 aa15.89■□□□□ 0.13
CHMP3-201ENST00000263856 LAMC1P11047 1609 aa15.88■□□□□ 0.13
CHMP3-201ENST00000263856 KANK1Q14678 1352 aa15.88■□□□□ 0.13
CHMP3-201ENST00000263856 PIK3C2GO75747 1445 aa15.88■□□□□ 0.13
CHMP3-201ENST00000263856 RLBP1P12271 317 aa15.87■□□□□ 0.13
CHMP3-201ENST00000263856 MADDQ8WXG6 1647 aa15.87■□□□□ 0.13
CHMP3-201ENST00000263856 ATP10AO60312 1499 aa15.87■□□□□ 0.13
CHMP3-201ENST00000263856 TRMT2AQ8IZ69 625 aaKnown RBP15.87■□□□□ 0.13
CHMP3-201ENST00000263856 UGGT1Q9NYU2 1555 aa15.86■□□□□ 0.13
CHMP3-201ENST00000263856 U2AF1L5P0DN76 240 aaPredicted RBP15.86■□□□□ 0.13
CHMP3-201ENST00000263856 U2AF1Q01081 240 aaKnown RBP eCLIP15.86■□□□□ 0.13
CHMP3-201ENST00000263856 GZF1Q9H116 711 aaPredicted RBP15.86■□□□□ 0.13
CHMP3-201ENST00000263856 FTSJ3Q8IY81 847 aaKnown RBP15.86■□□□□ 0.13
CHMP3-201ENST00000263856 PCDHB15Q9Y5E8 787 aa15.86■□□□□ 0.13
CHMP3-201ENST00000263856 MTHFSP49914 203 aa15.85■□□□□ 0.13
CHMP3-201ENST00000263856 U2SURPO15042 1029 aaKnown RBP15.85■□□□□ 0.13
CHMP3-201ENST00000263856 PDZRN3Q9UPQ7 1066 aa15.85■□□□□ 0.13
CHMP3-201ENST00000263856 SYNMO15061 1565 aa15.85■□□□□ 0.13
CHMP3-201ENST00000263856 PDE3AQ14432 1141 aa15.85■□□□□ 0.13
CHMP3-201ENST00000263856 NSD3Q9BZ95 1437 aa15.85■□□□□ 0.13
CHMP3-201ENST00000263856 MAPK8IP3Q9UPT6 1336 aa15.84■□□□□ 0.13
CHMP3-201ENST00000263856 RNF17Q9BXT8 1623 aaKnown RBP15.84■□□□□ 0.13
CHMP3-201ENST00000263856 GGT6Q6P531 493 aa15.84■□□□□ 0.13
CHMP3-201ENST00000263856 PLCH2O75038 1416 aa15.84■□□□□ 0.13
CHMP3-201ENST00000263856 PLXNC1O60486 1568 aa15.84■□□□□ 0.13
CHMP3-201ENST00000263856 CFAP65Q6ZU64 1925 aaKnown RBP15.84■□□□□ 0.13
CHMP3-201ENST00000263856 SCAPERQ9BY12 1400 aa15.84■□□□□ 0.13
CHMP3-201ENST00000263856 RARSP54136 660 aaKnown RBP15.83■□□□□ 0.13
CHMP3-201ENST00000263856 TSR2Q969E8 191 aaKnown RBP15.83■□□□□ 0.13
CHMP3-201ENST00000263856 USP19O94966 1318 aa15.83■□□□□ 0.12
CHMP3-201ENST00000263856 MFAP1P55081 439 aaKnown RBP15.83■□□□□ 0.12
CHMP3-201ENST00000263856 CLTCL1P53675 1640 aa15.83■□□□□ 0.12
CHMP3-201ENST00000263856 PRKCSHP14314 528 aaPredicted RBP15.83■□□□□ 0.12
CHMP3-201ENST00000263856 RUNDC1Q96C34 613 aa15.83■□□□□ 0.12
CHMP3-201ENST00000263856 IQGAP1P46940 1657 aa15.82■□□□□ 0.12
CHMP3-201ENST00000263856 KDM5AP29375 1690 aaKnown RBP15.82■□□□□ 0.12
CHMP3-201ENST00000263856 PMFBP1Q8TBY8 1022 aa15.81■□□□□ 0.12
CHMP3-201ENST00000263856 CFAP53Q96M91 514 aa15.81■□□□□ 0.12
CHMP3-201ENST00000263856 CHD1O14646 1710 aa15.81■□□□□ 0.12
CHMP3-201ENST00000263856 ERVK-7P63135 1459 aa15.8■□□□□ 0.12
CHMP3-201ENST00000263856 ABCC2Q92887 1545 aa15.79■□□□□ 0.12
CHMP3-201ENST00000263856 ITPRIPQ8IWB1 547 aa15.79■□□□□ 0.12
CHMP3-201ENST00000263856 SMC4Q9NTJ3 1288 aa15.79■□□□□ 0.12
CHMP3-201ENST00000263856 STK26Q9P289 416 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms