RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 SENP3Q9H4L4 574 aaPredicted RBP34.35■■■■□ 3.09
LSM4-201ENST00000252816 HDGFP51858 240 aaKnown RBP34.34■■■■□ 3.09
LSM4-201ENST00000252816 PLEKHG1Q9ULL1 1385 aa34.34■■■■□ 3.09
LSM4-201ENST00000252816 CLTCL1P53675 1640 aa34.33■■■■□ 3.09
LSM4-201ENST00000252816 PPP1R15AO75807 674 aaPredicted RBP34.33■■■■□ 3.09
LSM4-201ENST00000252816 NUTM2DQ5VT03 806 aaPredicted RBP34.33■■■■□ 3.09
LSM4-201ENST00000252816 SETD5Q9C0A6 1442 aa34.32■■■■□ 3.08
LSM4-201ENST00000252816 UBAP1LF5GYI3 381 aa34.32■■■■□ 3.08
LSM4-201ENST00000252816 LRRC7Q96NW7 1537 aa34.31■■■■□ 3.08
LSM4-201ENST00000252816 ABCF1Q8NE71 845 aaKnown RBP eCLIP34.31■■■■□ 3.08
LSM4-201ENST00000252816 BCANQ96GW7 911 aa34.3■■■■□ 3.08
LSM4-201ENST00000252816 FOXD1Q16676 465 aa34.27■■■■□ 3.08
LSM4-201ENST00000252816 MPHOSPH9Q99550 1183 aa34.25■■■■□ 3.07
LSM4-201ENST00000252816 KCNA6P17658 529 aa34.23■■■■□ 3.07
LSM4-201ENST00000252816 ZNF326Q5BKZ1 582 aaKnown RBP34.22■■■■□ 3.07
LSM4-201ENST00000252816 RAB3GAP2Q9H2M9 1393 aa34.22■■■■□ 3.07
LSM4-201ENST00000252816 ADAMTS13Q76LX8 1427 aa34.21■■■■□ 3.07
LSM4-201ENST00000252816 TBX22Q9Y458 520 aa34.18■■■■□ 3.06
LSM4-201ENST00000252816 KIF1BO60333 1816 aa34.16■■■■□ 3.06
LSM4-201ENST00000252816 ACIN1Q9UKV3 1341 aaKnown RBP34.16■■■■□ 3.06
LSM4-201ENST00000252816 NWD1Q149M9 1564 aa34.15■■■■□ 3.06
LSM4-201ENST00000252816 TOM1O60784 492 aa34.15■■■■□ 3.06
LSM4-201ENST00000252816 ALKQ9UM73 1620 aa34.15■■■■□ 3.06
LSM4-201ENST00000252816 NEXMIFQ5QGS0 1516 aa34.14■■■■□ 3.06
LSM4-201ENST00000252816 XIRP1Q702N8 1843 aaKnown RBP34.12■■■■□ 3.05
LSM4-201ENST00000252816 DIP2AQ14689 1571 aa34.11■■■■□ 3.05
LSM4-201ENST00000252816 TMEM94Q12767 1356 aa34.11■■■■□ 3.05
LSM4-201ENST00000252816 NKTRP30414 1462 aaKnown RBP34.1■■■■□ 3.05
LSM4-201ENST00000252816 PIP4K2BP78356 416 aa34.1■■■■□ 3.05
LSM4-201ENST00000252816 PROSER2Q86WR7 435 aaPredicted RBP34.1■■■■□ 3.05
LSM4-201ENST00000252816 CHD2O14647 1828 aaKnown RBP34.09■■■■□ 3.05
LSM4-201ENST00000252816 NRXN3Q9Y4C0 1643 aa34.08■■■■□ 3.05
LSM4-201ENST00000252816 RBM33Q96EV2 1170 aaKnown RBP34.08■■■■□ 3.05
LSM4-201ENST00000252816 SCAF1Q9H7N4 1312 aaKnown RBP34.07■■■■□ 3.05
LSM4-201ENST00000252816 SETBP1Q9Y6X0 1596 aa34.07■■■■□ 3.05
LSM4-201ENST00000252816 CCDC144AA2RUR9 1427 aa34.06■■■■□ 3.04
LSM4-201ENST00000252816 PIK3R4Q99570 1358 aa34.04■■■■□ 3.04
LSM4-201ENST00000252816 PTPRUQ92729 1446 aa34.01■■■■□ 3.03
LSM4-201ENST00000252816 RPGRIP1LQ68CZ1 1315 aa34.01■■■■□ 3.03
LSM4-201ENST00000252816 SPATA31E1Q6ZUB1 1445 aa33.99■■■■□ 3.03
LSM4-201ENST00000252816 HRCP23327 699 aa33.99■■■■□ 3.03
LSM4-201ENST00000252816 VGFO15240 615 aaPredicted RBP33.98■■■■□ 3.03
LSM4-201ENST00000252816 AMOTL2Q9Y2J4 779 aa33.96■■■■□ 3.03
LSM4-201ENST00000252816 METP08581 1390 aa33.96■■■■□ 3.03
LSM4-201ENST00000252816 PPLO60437 1756 aa33.94■■■■□ 3.02
LSM4-201ENST00000252816 HSPA1LP34931 641 aa33.94■■■■□ 3.02
LSM4-201ENST00000252816 RGL3Q3MIN7 710 aa33.94■■■■□ 3.02
LSM4-201ENST00000252816 MSH6P52701 1360 aa33.88■■■■□ 3.01
LSM4-201ENST00000252816 XRN1Q8IZH2 1706 aaKnown RBP33.88■■■■□ 3.01
LSM4-201ENST00000252816 NCOA3Q9Y6Q9 1424 aa33.87■■■■□ 3.01
LSM4-201ENST00000252816 ANKRD30BQ9BXX2 1392 aa33.86■■■■□ 3.01
LSM4-201ENST00000252816 ADGRF5Q8IZF2 1346 aa33.85■■■■□ 3.01
LSM4-201ENST00000252816 SETD1AO15047 1707 aaKnown RBP33.84■■■■□ 3.01
LSM4-201ENST00000252816 IFT172Q9UG01 1749 aa33.82■■■■□ 3
LSM4-201ENST00000252816 C14orf37Q86TY3 774 aa33.81■■■■□ 3
LSM4-201ENST00000252816 FAM135BQ49AJ0 1406 aa33.79■■■■□ 3
LSM4-201ENST00000252816 C19orf44Q9H6X5 657 aa33.76■■■□□ 2.99
LSM4-201ENST00000252816 SLAIN2Q9P270 581 aa33.75■■■□□ 2.99
LSM4-201ENST00000252816 SIPA1L2Q9P2F8 1722 aaPredicted RBP33.74■■■□□ 2.99
LSM4-201ENST00000252816 PIK3C2GO75747 1445 aa33.71■■■□□ 2.99
LSM4-201ENST00000252816 ROBO1Q9Y6N7 1651 aa33.71■■■□□ 2.99
LSM4-201ENST00000252816 CADPS2Q86UW7 1296 aa33.7■■■□□ 2.99
LSM4-201ENST00000252816 ATF3P18847 181 aa33.69■■■□□ 2.98
LSM4-201ENST00000252816 ROBO2Q9HCK4 1378 aa33.69■■■□□ 2.98
LSM4-201ENST00000252816 PTCH1Q13635 1447 aa33.69■■■□□ 2.98
LSM4-201ENST00000252816 PRAG1Q86YV5 1406 aa33.68■■■□□ 2.98
LSM4-201ENST00000252816 MYOM2P54296 1465 aa33.65■■■□□ 2.98
LSM4-201ENST00000252816 NRXN1Q9ULB1 1477 aa33.65■■■□□ 2.98
LSM4-201ENST00000252816 DCCP43146 1447 aa33.64■■■□□ 2.98
LSM4-201ENST00000252816 ADGRL3Q9HAR2 1447 aa33.64■■■□□ 2.98
LSM4-201ENST00000252816 DISP3Q9P2K9 1392 aa33.64■■■□□ 2.98
LSM4-201ENST00000252816 ASXL1Q8IXJ9 1541 aa33.63■■■□□ 2.97
LSM4-201ENST00000252816 TMEM132EQ6IEE7 984 aa33.62■■■□□ 2.97
LSM4-201ENST00000252816 NALCNQ8IZF0 1738 aa33.6■■■□□ 2.97
LSM4-201ENST00000252816 C14orf93Q9H972 538 aaKnown RBP33.6■■■□□ 2.97
LSM4-201ENST00000252816 STK26Q9P289 416 aa33.58■■■□□ 2.97
LSM4-201ENST00000252816 LRPPRCP42704 1394 aaKnown RBP33.58■■■□□ 2.97
LSM4-201ENST00000252816 CFAP70Q5T0N1 1121 aa33.57■■■□□ 2.96
LSM4-201ENST00000252816 MST1RQ04912 1400 aa33.55■■■□□ 2.96
LSM4-201ENST00000252816 TECPR2O15040 1411 aa33.54■■■□□ 2.96
LSM4-201ENST00000252816 DCAF11Q8TEB1 546 aa33.54■■■□□ 2.96
LSM4-201ENST00000252816 DHX57Q6P158 1386 aaKnown RBP33.54■■■□□ 2.96
LSM4-201ENST00000252816 ABCC11Q96J66 1382 aa33.53■■■□□ 2.96
LSM4-201ENST00000252816 KDM2AQ9Y2K7 1162 aa33.53■■■□□ 2.96
LSM4-201ENST00000252816 MED1Q15648 1581 aaPredicted RBP33.52■■■□□ 2.96
LSM4-201ENST00000252816 YTHDC2Q9H6S0 1430 aaKnown RBP33.52■■■□□ 2.96
LSM4-201ENST00000252816 BRINP3Q76B58 766 aa33.51■■■□□ 2.95
LSM4-201ENST00000252816 WAPLQ7Z5K2 1190 aa33.49■■■□□ 2.95
LSM4-201ENST00000252816 LAMC1P11047 1609 aa33.49■■■□□ 2.95
LSM4-201ENST00000252816 PHLPP1O60346 1717 aa33.48■■■□□ 2.95
LSM4-201ENST00000252816 KNDC1Q76NI1 1749 aa33.48■■■□□ 2.95
LSM4-201ENST00000252816 PLEKHH1Q9ULM0 1364 aa33.47■■■□□ 2.95
LSM4-201ENST00000252816 TRIM26Q12899 539 aaPredicted RBP33.45■■■□□ 2.95
LSM4-201ENST00000252816 STAC3Q96MF2 364 aa33.45■■■□□ 2.95
LSM4-201ENST00000252816 AHDC1Q5TGY3 1603 aaPredicted RBP33.44■■■□□ 2.94
LSM4-201ENST00000252816 COL16A1Q07092 1604 aaPredicted RBP33.43■■■□□ 2.94
LSM4-201ENST00000252816 C1orf167Q5SNV9 1468 aa33.42■■■□□ 2.94
LSM4-201ENST00000252816 ADGRB1O14514 1584 aa33.4■■■□□ 2.94
LSM4-201ENST00000252816 SIRT1Q96EB6 747 aa33.4■■■□□ 2.94
LSM4-201ENST00000252816 ILDR2Q71H61 639 aa33.39■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms