RNA–Protein interactions for RNA: ENST00000003912.7

NIPAL3-201, Transcript of NIPA like domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NIPAL3, Length 5,481 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-201ENST00000003912 TPRNQ4KMQ1 711 aa12.99□□□□□ -0.33
NIPAL3-201ENST00000003912 PRAM1Q96QH2 718 aa12.99□□□□□ -0.33
NIPAL3-201ENST00000003912 PLB1Q6P1J6 1458 aa12.99□□□□□ -0.33
NIPAL3-201ENST00000003912 FRAT2O75474 233 aaPredicted RBP12.99□□□□□ -0.33
NIPAL3-201ENST00000003912 UNC13AQ9UPW8 1703 aa12.99□□□□□ -0.33
NIPAL3-201ENST00000003912 ABTB2Q8N961 1025 aa12.98□□□□□ -0.33
NIPAL3-201ENST00000003912 ARHGEF11O15085 1522 aa12.98□□□□□ -0.33
NIPAL3-201ENST00000003912 CCDC141Q6ZP82 1450 aa12.98□□□□□ -0.33
NIPAL3-201ENST00000003912 ELL2O00472 640 aaPredicted RBP12.98□□□□□ -0.33
NIPAL3-201ENST00000003912 NUTM2GQ5VZR2 741 aa12.97□□□□□ -0.33
NIPAL3-201ENST00000003912 GGNBP2Q9H3C7 697 aa12.97□□□□□ -0.33
NIPAL3-201ENST00000003912 ADGRL1O94910 1474 aa12.97□□□□□ -0.33
NIPAL3-201ENST00000003912 GOLGA6L4A6NEF3 574 aa12.97□□□□□ -0.33
NIPAL3-201ENST00000003912 RIPK4P57078 832 aa12.96□□□□□ -0.33
NIPAL3-201ENST00000003912 KIF14Q15058 1648 aa12.96□□□□□ -0.34
NIPAL3-201ENST00000003912 DDX58O95786 925 aaKnown RBP12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 EIF2S2P20042 333 aaKnown RBP12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 ANKRD30BQ9BXX2 1392 aa12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 TRIM6-TRIM34B2RNG4 842 aa12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 GNL2Q13823 731 aaKnown RBP12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 APAF1O14727 1248 aa12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 ZNF692Q9BU19 519 aaPredicted RBP12.95□□□□□ -0.34
NIPAL3-201ENST00000003912 RUNDC1Q96C34 613 aa12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 CCDC7Q96M83 1385 aa12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 ERBINQ96RT1 1412 aa12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 KIF7Q2M1P5 1343 aa12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 ZKSCAN2Q63HK3 967 aa12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 SLC26A8Q96RN1 970 aa12.94□□□□□ -0.34
NIPAL3-201ENST00000003912 ROCK1Q13464 1354 aa12.93□□□□□ -0.34
NIPAL3-201ENST00000003912 TRIM44Q96DX7 344 aaPredicted RBP12.93□□□□□ -0.34
NIPAL3-201ENST00000003912 GNAI1P63096 354 aa12.92□□□□□ -0.34
NIPAL3-201ENST00000003912 CDK19Q9BWU1 502 aa12.92□□□□□ -0.34
NIPAL3-201ENST00000003912 C9orf78Q9NZ63 289 aaPredicted RBP12.92□□□□□ -0.34
NIPAL3-201ENST00000003912 DENND4BO75064 1496 aaPredicted RBP12.92□□□□□ -0.34
NIPAL3-201ENST00000003912 PHF23Q9BUL5 403 aaPredicted RBP12.91□□□□□ -0.34
NIPAL3-201ENST00000003912 SMG6Q86US8 1419 aaKnown RBP12.91□□□□□ -0.34
NIPAL3-201ENST00000003912 PTMAP06454 111 aaKnown RBP12.91□□□□□ -0.34
NIPAL3-201ENST00000003912 TSPYL4Q9UJ04 414 aa12.91□□□□□ -0.34
NIPAL3-201ENST00000003912 HMOX1P09601 288 aa12.91□□□□□ -0.34
NIPAL3-201ENST00000003912 AKNAQ7Z591 1439 aa12.91□□□□□ -0.34
NIPAL3-201ENST00000003912 RTEL1-TNFRSF6BF6WH68 1400 aa12.9□□□□□ -0.34
NIPAL3-201ENST00000003912 PPP6R1Q9UPN7 881 aa12.9□□□□□ -0.34
NIPAL3-201ENST00000003912 API5Q9BZZ5 524 aaKnown RBP12.9□□□□□ -0.34
NIPAL3-201ENST00000003912 CAMSAP2Q08AD1 1489 aa12.9□□□□□ -0.34
NIPAL3-201ENST00000003912 PCF11O94913 1555 aaKnown RBP12.9□□□□□ -0.34
NIPAL3-201ENST00000003912 PLEKHO1Q53GL0 409 aaPredicted RBP12.89□□□□□ -0.35
NIPAL3-201ENST00000003912 BCL2L13Q9BXK5 485 aa12.89□□□□□ -0.35
NIPAL3-201ENST00000003912 TCERG1O14776 1098 aaKnown RBP12.89□□□□□ -0.35
NIPAL3-201ENST00000003912 BIVM-ERCC5R4GMW8 1640 aa12.89□□□□□ -0.35
NIPAL3-201ENST00000003912 NBPF1Q3BBV0 1214 aa12.89□□□□□ -0.35
NIPAL3-201ENST00000003912 GAS2L2Q8NHY3 880 aa12.89□□□□□ -0.35
NIPAL3-201ENST00000003912 GOLGA6L6A8MZA4 724 aa12.88□□□□□ -0.35
NIPAL3-201ENST00000003912 USP35Q9P2H5 1018 aa12.88□□□□□ -0.35
NIPAL3-201ENST00000003912 FANCAO15360 1455 aa12.88□□□□□ -0.35
NIPAL3-201ENST00000003912 LRRFIP1Q32MZ4 808 aaKnown RBP12.87□□□□□ -0.35
NIPAL3-201ENST00000003912 STRN4Q9NRL3 753 aa12.87□□□□□ -0.35
NIPAL3-201ENST00000003912 CABP1Q9NZU7 370 aa12.87□□□□□ -0.35
NIPAL3-201ENST00000003912 MTHFSP49914 203 aa12.87□□□□□ -0.35
NIPAL3-201ENST00000003912 FKBP5Q13451 457 aaPredicted RBP12.87□□□□□ -0.35
NIPAL3-201ENST00000003912 NECTIN2Q92692 538 aa12.87□□□□□ -0.35
NIPAL3-201ENST00000003912 TATP17735 454 aaPredicted RBP12.86□□□□□ -0.35
NIPAL3-201ENST00000003912 ZBED9Q6R2W3 1325 aa12.86□□□□□ -0.35
NIPAL3-201ENST00000003912 CNTLNQ9NXG0 1405 aa12.86□□□□□ -0.35
NIPAL3-201ENST00000003912 ATAD2Q6PL18 1390 aa12.86□□□□□ -0.35
NIPAL3-201ENST00000003912 NUTM2BA6NNL0 878 aaPredicted RBP12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 NUTM2EB1AL46 878 aaPredicted RBP12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 NUTM2AQ8IVF1 878 aaPredicted RBP12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 TOMM22Q9NS69 142 aa12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 NOL10Q9BSC4 688 aaKnown RBP12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 HTATSF1O43719 755 aaKnown RBP12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 HSP90B1P14625 803 aaKnown RBP12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 PIP4K2BP78356 416 aa12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 DDX19BQ9UMR2 479 aa12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 TEX14Q8IWB6 1497 aa12.85□□□□□ -0.35
NIPAL3-201ENST00000003912 WASHC2AQ641Q2 1341 aa12.84□□□□□ -0.35
NIPAL3-201ENST00000003912 PLCB2Q00722 1185 aa12.84□□□□□ -0.35
NIPAL3-201ENST00000003912 NRDCO43847 1150 aa12.84□□□□□ -0.35
NIPAL3-201ENST00000003912 TOM1L2Q6ZVM7 507 aa12.84□□□□□ -0.35
NIPAL3-201ENST00000003912 SLC12A5Q9H2X9 1139 aa12.84□□□□□ -0.35
NIPAL3-201ENST00000003912 DMRT2Q9Y5R5 561 aa12.84□□□□□ -0.35
NIPAL3-201ENST00000003912 NOP58Q9Y2X3 529 aaKnown RBP12.83□□□□□ -0.35
NIPAL3-201ENST00000003912 MFAP1P55081 439 aaKnown RBP12.83□□□□□ -0.36
NIPAL3-201ENST00000003912 KIF16BQ96L93 1317 aa12.83□□□□□ -0.36
NIPAL3-201ENST00000003912 SF3B2Q13435 895 aaKnown RBP12.83□□□□□ -0.36
NIPAL3-201ENST00000003912 RIC3Q7Z5B4 369 aa12.83□□□□□ -0.36
NIPAL3-201ENST00000003912 PRDM11Q9NQV5 511 aa12.83□□□□□ -0.36
NIPAL3-201ENST00000003912 MAP3K1Q13233 1512 aa12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 ABCC5O15440 1437 aa12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 VPS37DQ86XT2 251 aa12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 ANKRD45Q5TZF3 282 aa12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 AMOTL1Q8IY63 956 aa12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 BRD4O60885 1362 aaPredicted RBP12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 CLSTN1O94985 981 aa12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 DZIP1LQ8IYY4 767 aaKnown RBP12.82□□□□□ -0.36
NIPAL3-201ENST00000003912 NAIPQ13075 1403 aa12.81□□□□□ -0.36
NIPAL3-201ENST00000003912 SPRYD3Q8NCJ5 442 aa12.81□□□□□ -0.36
NIPAL3-201ENST00000003912 PTPN23Q9H3S7 1636 aa12.81□□□□□ -0.36
NIPAL3-201ENST00000003912 G3BP1Q13283 466 aaKnown RBP eCLIP12.81□□□□□ -0.36
NIPAL3-201ENST00000003912 SPG7Q9UQ90 795 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms