RNA–Protein interactions for RNA: ENSMUST00000056508.11

Clcn3-202, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS P4 TSL 1 (best) BASIC

Gene Clcn3, Length 5,684 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-202ENSMUST00000056508 SelenooQ9DBC0 667 aa11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Rbm19Q8R3C6 952 aaKnown RBP11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Akap17bA2A3V1 959 aa11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Dnai2A2AC93 623 aa11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Fam170aQ66LM6 333 aa11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 CrebrfQ8CDG5 640 aaKnown RBP11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Zcrb1Q9CZ96 217 aaKnown RBP11.09□□□□□ -0.63
Clcn3-202ENSMUST00000056508 Klf15Q9EPW2 415 aa11.08□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Neurod1Q60867 357 aa11.08□□□□□ -0.64
Clcn3-202ENSMUST00000056508 MafgO54790 162 aa11.07□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Ppp4r4Q8C0Y0 875 aa11.07□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Zbtb12Q9Z150 459 aa11.07□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Abcf1Q6P542 837 aaKnown RBP11.07□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Fam193aQ8CGI1 1231 aaKnown RBP11.07□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Ppp6r1Q7TSI3 856 aa11.07□□□□□ -0.64
Clcn3-202ENSMUST00000056508 NaspQ99MD9 773 aaKnown RBP11.06□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Trim30dE9PWL0 497 aa11.06□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Gm973E9Q295 1059 aa11.06□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Pwp2Q8BU03 919 aaKnown RBP11.06□□□□□ -0.64
Clcn3-202ENSMUST00000056508 NbnQ9R207 751 aa11.06□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Plekhg3Q4VAC9 1341 aa11.06□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Atp6v1e1P50518 226 aa11.05□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Nol12Q8BG17 217 aa11.05□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Dnaja1P63037 397 aaKnown RBP11.05□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Paip2Q9D6V8 124 aa11.05□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Calr3Q9D9Q6 380 aa11.05□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Ccdc146E9Q9F7 977 aa11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Polr3eQ9CZT4 710 aa11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Sycp1Q62209 993 aa11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Ppp2r5aQ6PD03 486 aa11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Sh3bp1P55194 680 aa11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Jdp2P97875 163 aa11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Arhgef1Q61210 920 aaKnown RBP11.04□□□□□ -0.64
Clcn3-202ENSMUST00000056508 PnnO35691 725 aaKnown RBP11.03□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Bach1P97302 739 aa11.03□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Hdac9Q99N13 588 aa11.03□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Taf7lQ9D3R9 471 aa11.03□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Pdia4P08003 638 aaKnown RBP11.03□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Fbln2P37889 1221 aa11.02□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Dzip1lQ499E4 774 aa11.02□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Ms4a1P19437 291 aa11.02□□□□□ -0.64
Clcn3-202ENSMUST00000056508 Apbb1ipQ8R5A3 670 aa11.02□□□□□ -0.65
Clcn3-202ENSMUST00000056508 AatfQ9JKX4 526 aaKnown RBP11.02□□□□□ -0.65
Clcn3-202ENSMUST00000056508 S100bP50114 92 aa11.02□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Smc2Q8CG48 1191 aaKnown RBP11.01□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Trim11Q99PQ2 467 aa11.01□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Sart3Q9JLI8 962 aaKnown RBP11□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Tpm2P58774 284 aa11□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Add2Q9QYB8 725 aa10.99□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Gm7361D3Z6R1 267 aa10.99□□□□□ -0.65
Clcn3-202ENSMUST00000056508 EvlP70429 414 aa10.99□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Gspt2Q149F3 632 aa10.99□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Mrvi1Q9WUX5 899 aaKnown RBP10.99□□□□□ -0.65
Clcn3-202ENSMUST00000056508 PnisrA2AJT4 805 aaKnown RBP10.98□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Ipo4Q8VI75 1082 aa10.98□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Znf771Q8BJ90 317 aa10.98□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Trim29Q8R2Q0 587 aa10.98□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Usp33Q8R5K2 909 aa10.98□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Aimp1P31230 310 aaKnown RBP10.98□□□□□ -0.65
Clcn3-202ENSMUST00000056508 E2f4Q8R0K9 410 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Ccdc191J3QQ27 883 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Brd1E9PZ26 1189 aaKnown RBP10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Tpcn2Q8BWC0 731 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Calcoco2A2A6M5 331 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Cnpy4Q8BQ47 245 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Il27Q8K3I6 234 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Letm1Q9Z2I0 738 aa10.97□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Kbtbd12Q9D618 625 aa10.96□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Gm21671G3UY31 267 aa10.96□□□□□ -0.65
Clcn3-202ENSMUST00000056508 NefhP19246 1090 aa10.96□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Mns1Q61884 491 aa10.96□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Drc7Q6V3W6 876 aa10.96□□□□□ -0.65
Clcn3-202ENSMUST00000056508 Sept11Q8C1B7 431 aaKnown RBP10.96□□□□□ -0.66
Clcn3-202ENSMUST00000056508 RdxP26043 583 aaKnown RBP10.96□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Spink5Q148R4 1017 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Dusp27Q148W8 1138 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Map7O88735 730 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Ppfia4B8QI36 1187 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Dusp9Q7TNL7 452 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Ppfia3P60469 1194 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Dhx38Q80X98 1228 aa10.95□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Mphosph10Q810V0 681 aaKnown RBP10.94□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Pagr1aQ99L02 253 aa10.94□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Zfyve19Q9DAZ9 389 aa10.94□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Arl10Q9QXJ4 243 aa10.94□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Perm1Q149B8 807 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Drc3Q9D5E4 523 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 CactinQ9CS00 772 aaKnown RBP10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Fermt3Q8K1B8 665 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Lonrf3Q9D4H7 753 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 A0A1W2P7S8 802 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 FosP01101 380 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Maats1Q8BRC6 783 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Kcnv2Q8CFS6 562 aa10.93□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Trerf1Q8BXJ2 1205 aa10.92□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Gm21083A0A0G2JFD5 256 aa10.92□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Gm21149A0A0G2JFY7 255 aa10.92□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Rad51ap2G3UW63 976 aa10.92□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Speer4cG3UXD1 256 aa10.92□□□□□ -0.66
Clcn3-202ENSMUST00000056508 Gm17019K7N6W5 255 aa10.92□□□□□ -0.66
Retrieved 100 of 22,080 RNA–protein pairs in 50.1 ms