RNA–Protein interactions for RNA: YLR223C

IFH1, Transcript of Coactivator, regulates transcription of ribosomal protein (RP) genes, yeast

Gene IFH1, Length 3,258 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
IFH1	YLR223C	ASR1	Q06834	288 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	DCN1	Q12395	269 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	FMP16	Q12497	93 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YCL001W-B	Q96VH2	84 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YGL041W-A	P0C5N3	154 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	RPS24A	P0CX31	135 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	RPS24B	P0CX32	135 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	POX1	P13711	748 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	SEC59	P20048	519 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	SAR1	P20606	190 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	RPS1B	P23248	255 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	YCR025C	P25352	136 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.86	□□□□□ -2.27	not detected
IFH1	YLR223C	UPS2	P35200	230 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	ECM13	P38195	257 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	FMP23	P38231	175 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	URA8	P38627	578 aa	Predicted RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	NVJ1	P38881	321 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	AIM2	P39721	246 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	AST2	P39945	430 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	DDI1	P40087	428 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	TIF34	P40217	347 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	YJL144W	P47009	104 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	GLG2	P47011	380 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YGL088W	P53151	121 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YGR017W	P53210	297 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	SAE3	P89114	91 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	ARL3	Q02804	198 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YMR114C	Q04471	368 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	YLR446W	Q06204	433 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	TAZ1	Q06510	381 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	SUE1	Q06524	206 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YET3	Q07451	203 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	LDB18	Q07887	179 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	HRD1	Q08109	551 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YLR053C	Q12026	108 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	SIA1	Q12212	622 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	YLR361C-A	Q3E795	98 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	USO1	P25386	1790 aa		0.86	□□□□□ -2.27
IFH1	YLR223C	FAS2	P19097	1887 aa	Known RBP	0.86	□□□□□ -2.27
IFH1	YLR223C	BCK1	Q01389	1478 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	QCR7	P00128	127 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	RHO1	P06780	209 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	RPL31A	P0C2H8	113 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	COS2	P0CX12	379 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	COS3	P0CX13	379 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	PET9	P18239	318 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	IDP1	P21954	428 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	GPI12	P23797	304 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	IFM1	P25038	676 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	PBN1	P25580	416 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	CWP1	P28319	239 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	IMP3	P32899	183 aa	Predicted RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	RPT5	P33297	434 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	MRPL3	P36516	390 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	MRPL15	P36523	253 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	PRS2	P38620	318 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	GRE3	P38715	327 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
IFH1	YLR223C	BIG1	P38813	335 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	YER121W	P40076	114 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	RFC2	P40348	353 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	AVT7	P40501	490 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	ERG10	P41338	398 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	YJL016W	P47072	561 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	HHO1	P53551	258 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	ALG9	P53868	555 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	SWT21	P53873	357 aa	Predicted RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	MAK3	Q03503	176 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	PEX30	Q06169	523 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	PRP11	Q07350	266 aa	Predicted RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	PAM18	Q07914	168 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	YNG1	Q08465	219 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	NSL1	Q12143	216 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	YOR214C	Q12282	236 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	DGK1	Q12382	290 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	PAN1	P32521	1480 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	THP2	O13539	261 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	TDH2	P00358	332 aa	Known RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	SPS2	P08459	502 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	DAL82	P21705	255 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	TRX3	P25372	127 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	RRT12	P25381	491 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	UTR5	P32630	166 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	YOR062C	P36025	268 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	RIB1	P38066	345 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	COX15	P40086	486 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	ERV14	P53173	138 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	COG7	P53195	279 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	NQM1	P53228	333 aa	Predicted RBP	0.85	□□□□□ -2.27
IFH1	YLR223C	MAL13	P53338	473 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	NRK1	P53915	240 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	DPP1	Q05521	289 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	FRQ1	Q06389	190 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	MEU1	Q07938	337 aa	Known RBP RIP-Chip data	0.85	□□□□□ -2.27	not detected
IFH1	YLR223C	FYV7	Q12247	151 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	DOP1	Q03921	1698 aa		0.85	□□□□□ -2.27
IFH1	YLR223C	KRE1	P17260	313 aa		0.84	□□□□□ -2.27
IFH1	YLR223C	SUA7	P29055	345 aa	Predicted RBP	0.84	□□□□□ -2.27
IFH1	YLR223C	SPT14	P32363	452 aa		0.84	□□□□□ -2.27
IFH1	YLR223C	SPT4	P32914	102 aa	Predicted RBP	0.84	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 27.1 ms