RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 F8W8V4 182 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 I3L4J1 428 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 APOL1O14791 398 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 EXTL3O43909 919 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TFPTP0C1Z6 253 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ATF6P18850 670 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CDC27P30260 824 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 YARSP54577 528 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ARID5AQ03989 594 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 FOLH1Q04609 750 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NR1H3Q13133 447 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NFE2L1Q14494 772 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ACAP2Q15057 778 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MAPK6Q16659 721 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MCMDC2Q4G0Z9 681 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 HELQQ8TDG4 1101 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MCRS1Q96EZ8 462 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 B3GALT6Q96L58 329 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 BIRC8Q96P09 236 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PHF20Q9BVI0 1012 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC8Q9H0W5 538 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 GPRC5DQ9NZD1 345 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ANKFY1Q9P2R3 1169 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 KLHL3Q9UH77 587 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TEKT2Q9UIF3 430 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CNOT7Q9UIV1 285 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NOC2LQ9Y3T9 749 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MROH7-TTC4A0A0A0MT08 1334 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TRIM75PA6NK02 468 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 RNF113AO15541 343 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CYP1A1P04798 512 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PLCG1P19174 1290 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 FECHP22830 423 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PDIA3P30101 505 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 GPD2P43304 727 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 AP3M2P53677 418 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 RPL26P61254 145 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 AMPD3Q01432 767 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 GNA13Q14344 377 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SLC45A4Q5BKX6 768 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CENPUQ71F23 418 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 HEATR3Q7Z4Q2 680 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CDH24Q86UP0 819 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 IFNL2Q8IZJ0 200 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 LSMEM1Q8N8F7 131 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MINDY2Q8NBR6 621 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 APPL2Q8NEU8 664 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CITED4Q96RK1 184 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 C1orf50Q9BV19 199 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ZNF717Q9BY31 904 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 DDX43Q9NXZ2 648 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 REXO2Q9Y3B8 237 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 STARD13Q9Y3M8 1113 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NR2E3Q9Y5X4 410 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NPHP4O75161 1426 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 ARHGEF40Q8TER5 1519 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 B8ZZF3 427 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 COBLO75128 1261 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 IDH1O75874 414 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MYO1DO94832 1006 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 UFL1O94874 794 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CA4P22748 312 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PHKA2P46019 1235 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 VCPP55072 806 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MCCD1P59942 119 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TMED2Q15363 201 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 TRIP13Q15645 432 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 PHKG1Q16816 387 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SLC10A5Q5PT55 438 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 AAGABQ6PD74 315 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 DCDC5Q6ZRR9 648 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 BARGINQ6ZT62 677 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 DHDDSQ86SQ9 333 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 MTDHQ86UE4 582 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CTAGE3PQ8IX95 158 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 CCDC105Q8IYK2 499 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SLC22A8Q8TCC7 542 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 EPS8L3Q8TE67 593 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 SERPINB12Q96P63 405 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NAP1L4Q99733 375 aaKnown RBP6.03□□□□□ -1.44
SCN1A-216ENST00000637968 NPHS2Q9NP85 383 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 DNAJB4Q9UDY4 337 aa6.03□□□□□ -1.44
SCN1A-216ENST00000637968 C16orf96A6NNT2 1141 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 F8W810 466 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 VWA5AO00534 786 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 GSC2O15499 205 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ACSL3O95573 720 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 PSMC3P17980 439 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CENPAP49450 140 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SLC15A2Q16348 729 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 ZBTB41Q5SVQ8 909 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 CDKAL1Q5VV42 579 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 SCARA3Q6AZY7 606 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 KCTD4Q8WVF5 259 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 JADE3Q92613 823 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 INPP4AQ96PE3 977 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-216ENST00000637968 BTBD9Q96Q07 612 aa6.02□□□□□ -1.45
SCN1A-216ENST00000637968 TMEM206Q9H813 350 aa6.02□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms