RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 OCMP0CE72 109 aaPredicted RBP9.35□□□□□ -0.91
VCL-206ENST00000623461 CDK8P49336 464 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 CLK1P49759 484 aaKnown RBP9.35□□□□□ -0.91
VCL-206ENST00000623461 GTF2IP78347 998 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 KLHDC7AQ5VTJ3 777 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 USP17L1Q7RTZ2 530 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 ZNF507Q8TCN5 953 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 MAP3K14Q99558 947 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 SENP7Q9BQF6 1050 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 NGRNQ9NPE2 291 aaKnown RBP9.35□□□□□ -0.91
VCL-206ENST00000623461 UTYO14607 1347 aa9.35□□□□□ -0.91
VCL-206ENST00000623461 INO80Q9ULG1 1556 aaPredicted RBP9.35□□□□□ -0.91
VCL-206ENST00000623461 TBKBP1A7MCY6 615 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 SNX2O60749 519 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 USP17L8P0C7I0 530 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 JAK3P52333 1124 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 RAB14P61106 215 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 RUNX1T1Q06455 604 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 STX5Q13190 355 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 TTMPQ5BVD1 217 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 VPS33BQ9H267 617 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 MAGED2Q9UNF1 606 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 SESN1Q9Y6P5 492 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 MAP2P11137 1827 aaKnown RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 SMIM31A0A1B0GVY4 71 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 APOL1O14791 398 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ZBTB5O15062 677 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 RASSF9O75901 435 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 USP1O94782 785 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 BMP3P12645 472 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 FMO5P49326 533 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PEX5P50542 639 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 AP3M2P53677 418 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 KCNQ4P56696 695 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PIGHQ14442 188 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 CAPRIN1Q14444 709 aaKnown RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 RASA2Q15283 850 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 AS3MTQ9HBK9 375 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 NSMCE4AQ9NXX6 385 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 MARCOQ9UEW3 520 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 MYO3BQ8WXR4 1341 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 OVOS2A0A0G2JMS6 1433 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ZFYVE16Q7Z3T8 1539 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.34□□□□□ -0.912e-6■■■■□ 23.9
VCL-206ENST00000623461 CYP2D7A0A087X1C5 515 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 EIF2S1P05198 315 aaKnown RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 PSAPP07602 524 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ATP6V1C1P21283 382 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 COPB2P35606 906 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 STK4Q13043 487 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 TMC3Q7Z5M5 1100 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PASD1Q8IV76 773 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ZSWIM1Q9BR11 485 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 NDEL1Q9GZM8 345 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 TFR2Q9UP52 801 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 P4HA2O15460 535 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 SLC16A2P36021 539 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PLEKHA7Q6IQ23 1121 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 TTC39CQ8N584 583 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 KCTD17Q8N5Z5 321 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 COQ7Q99807 217 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PLA2R1Q13018 1463 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 SRGAP2CP0DJJ0 459 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 MYL2P10916 166 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 IFNA8P32881 189 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 C21orf59P57076 290 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ITGB3BPQ13352 177 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 PDAP1Q13442 181 aaKnown RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 CDO1Q16878 200 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 EPHA10Q5JZY3 1008 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 TMC5Q6UXY8 1006 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 RFWD2Q8NHY2 731 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 RIN3Q8TB24 985 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 NR1H4Q96RI1 486 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 LRRC4Q9HBW1 653 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 KANSL1LA0AUZ9 987 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 SPDYE16A6NNV3 312 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 ERVV-1B6SEH8 477 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 EYA4O95677 639 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 CCND2P30279 289 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 MECOMQ03112 1051 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 SPDYE2Q495Y8 402 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ZNF667Q5HYK9 610 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 RNF43Q68DV7 783 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 CWF19L1Q69YN2 538 aaKnown RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 ARID3BQ8IVW6 561 aaPredicted RBP9.34□□□□□ -0.91
VCL-206ENST00000623461 MKNK1Q9BUB5 465 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 TMEM120AQ9BXJ8 343 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PCMTD2Q9NV79 361 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 PAK5Q9P286 719 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 ANKARQ7Z5J8 1434 aa9.34□□□□□ -0.91
VCL-206ENST00000623461 A2ML1A8K2U0 1454 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 APOA4P06727 396 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 PTENP60484 403 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 CNDP1Q96KN2 507 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 UNC45AQ9H3U1 944 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 STMN3Q9NZ72 180 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 DAPK2Q9UIK4 370 aa9.34□□□□□ -0.92
VCL-206ENST00000623461 HEG1Q9ULI3 1381 aa9.33□□□□□ -0.92
VCL-206ENST00000623461 TRPC5OSA6NMA1 111 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms