RNA–Protein interactions for RNA: ENST00000618836.4

UBE2D3-233, Transcript of ubiquitin conjugating enzyme E2 D3, human

APPRIS ALT1 TSL 5 BASIC

Gene UBE2D3, Length 3,472 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-233	ENST00000618836	SH3RF1	Q7Z6J0	888 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	DPP9	Q86TI2	863 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	MAML2	Q8IZL2	1156 aa	Predicted RBP	4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SMARCC2	Q8TAQ2	1214 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GTF3C2	Q8WUA4	911 aa	Predicted RBP	4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TMEM237	Q96Q45	408 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	BCL7B	Q9BQE9	202 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	AIFM2	Q9BRQ8	373 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SLC26A6	Q9BXS9	759 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SEMA3G	Q9NS98	782 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ATAD3A	Q9NVI7	634 aa		4.37	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ANKAR	Q7Z5J8	1434 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ADAMTS2	O95450	1211 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ENO2	P09104	434 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ACTN1	P12814	892 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SOX5	P35711	763 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	IREB2	P48200	963 aa	Known RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	EIF4G2	P78344	907 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GSTO1	P78417	241 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	RASGRF1	Q13972	1273 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	DHX34	Q14147	1143 aa	Known RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	RFTN1	Q14699	578 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	PTPA	Q15257	358 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CFAP157	Q5JU67	520 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TMTC4	Q5T4D3	741 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GRTP1	Q5TC63	336 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	USPL1	Q5W0Q7	1092 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	LUZP1	Q86V48	1076 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	FCHSD1	Q86WN1	690 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ZNF507	Q8TCN5	953 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	THAP3	Q8WTV1	239 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TCEANC2	Q96MN5	208 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	HS3ST6	Q96QI5	342 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SIL1	Q9H173	461 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	FANCE	Q9HB96	536 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	NMRK1	Q9NWW6	199 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	REV1	Q9UBZ9	1251 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	EXOC7	Q9UPT5	735 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	FAM50B	Q9Y247	325 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SLC4A7	Q9Y6M7	1214 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TJP1	Q07157	1748 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	KDM2B	Q8NHM5	1336 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	PPIP5K1	Q6PFW1	1433 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CTAGE9	A4FU28	777 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GSG1L2	A8MUP6	293 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CAPN14	A8MX76	684 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	MAGEB3	O15480	346 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ZC3H11A	O75152	810 aa	Known RBP eCLIP	4.36	□□□□□ -1.71	3e-19	■□□□□ 8.5
UBE2D3-233	ENST00000618836	SEC22B	O75396	215 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	NPTXR	O95502	500 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SSB	P05455	408 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	PDHA1	P08559	390 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SRGAP2B	P0DMP2	458 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	KEL	P23276	732 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CDC25C	P30307	473 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	AK2	P54819	239 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	UBE2I	P63279	158 aa	Known RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TFAP4	Q01664	338 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	EHHADH	Q08426	723 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	KCNAB2	Q13303	367 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	E2F2	Q14209	437 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	MINDY4	Q4G0A6	757 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	OXLD1	Q5BKU9	147 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SLC30A9	Q6PML9	568 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TPH2	Q8IWU9	490 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	FERMT2	Q96AC1	680 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	FAM149B1	Q96BN6	582 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	SGCZ	Q96LD1	299 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CRB3	Q9BUF7	120 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	STK31	Q9BXU1	1019 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	XRN2	Q9H0D6	950 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	EHMT1	Q9H9B1	1298 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	PDE7B	Q9NP56	450 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	OSGEP	Q9NPF4	335 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GPRC5B	Q9NZH0	403 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TRHDE	Q9UKU6	1024 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ZNF148	Q9UQR1	794 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TELO2	Q9Y4R8	837 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CCDC88A	Q3V6T2	1871 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	WDR19	Q8NEZ3	1342 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	CCDC85C	A6NKD9	419 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	NDUFS8	O00217	210 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TNFRSF10A	O00220	468 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GABRD	O14764	452 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	LIN7A	O14910	233 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	BIRC5	O15392	142 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TXNL1	O43396	289 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	URI1	O94763	535 aa	Predicted RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	IVL	P07476	585 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	GAP43	P17677	238 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	S100A1	P23297	94 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	NPTX2	P47972	431 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	TUFM	P49411	452 aa	Known RBP	4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	ALG11	Q2TAA5	492 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	LETM2	Q2VYF4	491 aa		4.36	□□□□□ -1.71
UBE2D3-233	ENST00000618836	XKR9	Q5GH70	373 aa		4.36	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms